4LEDA

The crystal structure of pyocin l1 bound to d-rhamnose at 2.37 angstroms
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
254
structure length
254
Chain Sequence
ASSLAPRQVIRDGQFITSPNGKYKLVMQADGNLVLYEDGTKPIWNTTPVGPGAKAVMEFNLNLYNKAGQVAWSSNVYTAYLFEEFKDEAYLNLQDDGDFGIFSDEAKWGSIVLSRPEVGVKNKIIPTGTVMVPGTEYINGNYRLAFQGDGNLVIYQINPQVVIWATYTMGADRAVVQEDGNFVIYKGTTALWHTHTATGMPAYLKFTNTGKLFLSQPTLLWTLKRGSLSKPPKVIPGQHGPLDTTPIWSWPHDY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords Pyocin L1
publication title Lectin-Like Bacteriocins from Pseudomonas spp. Utilise D-Rhamnose Containing Lipopolysaccharide as a Cellular Receptor.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 65
structure length 254
sequence length 254
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-06-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.90.10.20 Mainly Beta Orthogonal Prism Agglutinin, subunit A Agglutinin, subunit A 4ledA02
2.90.10.30 Mainly Beta Orthogonal Prism Agglutinin, subunit A Agglutinin, subunit A 4ledA01
4LEDA 4GC2A 4LE7A 3M7HA 4OKCA 4GC1A 4OITA 4LEAA 4OIZA 3M7JA
chains in the Genus database with same CATH superfamily
1BWUP 1MSAA 5D9ZB 5T1XA 2D04B 5T20A 1BWUQ 5D5GA 4H3OA 4LEAA 5T1XB 1XD6A 5T20B 1B2PA 1JPCA 5D5GB 1BWUA 3A0EA 3DZWA 3M7HA 4GC2A 4LE7A 4OKCA 1KJ1D 3MEZA 4OIZA 1XD5A 3MEZB 4PDTA 3A0DA 1NPLA 2DPFA 1NIVA 4TKCA 3M7JA 3R0EA 1DLPA 3A0CA 4LEDA 5J76A 3R0EB 1KJ1A 5J76B 4GC1A 4OITA 1BWUD 5D9ZA 2D04A
chains in the Genus database with same CATH topology
4LEDA 4GC2A 4LE7A 3M7HA 4OKCA 4GC1A 4OITA 4LEAA 4OIZA 3M7JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LED A;  4GC2 A;  4LE7 A;  3M7H A;  4OKC A;  4GC1 A;  4OIT A;  4LEA A;  4OIZ A;  3M7J A; 
#chains in the Genus database with same CATH topology
 1BWU P;  1MSA A;  5D9Z B;  5T1X A;  2D04 B;  5T20 A;  1BWU Q;  5D5G A;  4H3O A;  4LEA A;  5T1X B;  1XD6 A;  5T20 B;  1B2P A;  1JPC A;  5D5G B;  1BWU A;  3A0E A;  3DZW A;  3M7H A;  4GC2 A;  4LE7 A;  4OKC A;  1KJ1 D;  3MEZ A;  4OIZ A;  1XD5 A;  3MEZ B;  4PDT A;  3A0D A;  1NPL A;  2DPF A;  1NIV A;  4TKC A;  3M7J A;  3R0E A;  1DLP A;  3A0C A;  4LED A;  5J76 A;  3R0E B;  1KJ1 A;  5J76 B;  4GC1 A;  4OIT A;  1BWU D;  5D9Z A;  2D04 A; 
#chains in the Genus database with same CATH homology
 4LED A;  4GC2 A;  4LE7 A;  3M7H A;  4OKC A;  4GC1 A;  4OIT A;  4LEA A;  4OIZ A;  3M7J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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