4N2XA

Crystal structure of dl-2-haloacid dehalogenase
Total Genus 113
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
113
Knots found
sequence length
298
structure length
298
Chain Sequence
RSVLGSFPQVDHHQAKGQLAEVYDDIHNTMRVPWVAFGIRVMSQFPHFIPDAWAALKPNIETRYAEDGADLIRLNSIVPGPVMPNPTPKLLRLGWTESKIEELKTALDLLNYGNPKYLILITAFNEAWHERDTGGRAPQKLRGRDAERIPYGLPNSVEKFNLLDIEKASDRTQTVLRDIRDAFLHHGPASDYRVLGVWPDYLEIALRDSLAPVALSAEYDETARRIRKIAREHVKGFDKPAGVAWRDMTEKLSAEQIAGLTGLLFMYNRFIADITIAIIRLKQAFSGPEDATANKYTN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords DL-2-haloacid dehalogenase
publication title Binding modes of DL-2-haloacid dehalogenase revealed by crystallography, modeling and isotope effects studies.
pubmed doi rcsb
source organism Methylobacterium
total genus 113
structure length 298
sequence length 298
chains with identical sequence B, D, E, F, G
other databases KnotProt 2.0: K +61 +61 41 +31
ec nomenclature ec 3.8.1.10: 2-haloacid dehalogenase (configuration-inverting).
pdb deposition date 2013-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10778 DehI Halocarboxylic acid dehydrogenase DehI
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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