4NBAD

Carbazole-bound oxygenase with ile262 replaced by val and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Terminal oxygenase component of carbazole
publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
total genus 19
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbaD00
1G8KB 4P1BH 1BE3E 1NTME 1PP9E 2DE7D 2DE6D 3CX5E 1NTZE 3FOUA 4HM2A 4QUPA 1UUVA 4NBED 2YFIA 4QDFA 3GTEA 1UUWA 2E76D 1BCCE 1NDOA 2D2CD 2A06E 1NYKA 3H1HE 3EN1A 2NWFA 1KYOE 5CXMA 4HM1A 3H1IE 1KB9E 2E4QA 4OGQD 3H1JE 1P84E 3BCCE 2E4PA 4NBBD 2XSHA 2NVFA 3TGUE 1JM1A 1O7WA 1G8JB 4NBGD 2HMLA 4H13D 5KLVE 1L0NE 3CXHE 2Q3WA 3GCEA 2BMOA 1SJGA 1SQQE 3L73E 5BOKA 2NVGA 3H1LE 2ZYLA 3GOBA 1FQTA 3GZXA 5AEUA 2BCCE 3L71E 2NUKA 3CWBE 1SQXE 5KKZC 2QJKC 3GL0A 4NBAD 4NBFD 4H44D 1O7HA 2BMQA 2YVJB 1VCKA 4HM7A 4NBHD 4QURA 3L70E 4AAYB 2I7FA 1O7GA 1PPJE 3GKEA 4HM6A 4PV1D 5KLIC 1EG9A 2ZT9D 2CKFA 1SQVE 1RFSA 4HM5A 4NB8D 1NU1E 2NVEA 3GB4A 1NTKE 3H1KE 2XSOA 2BMRA 4NB9D 4NBDD 1VM9A 3L72E 4HM8A 3GL2A 2FYUE 1ZRTE 3L75E 4HKVA 2GBXA 2YFLA 2E74D 2YIUC 4AIVA 4NBCD 3DQYA 2YFJA 4H0LD 1WQLA 2HMOA 2HMMA 4QDCA 1RIEA 4U3FE 3EQQA 3AZCA 5AEWA 1O7MA 1SQBE 3L74E 3C0DA 2E75D 2GBWA 4QCKA 4HM0A 2IBZE 3VMGD 2QJYC 2XR8A 1ULIA 3N0QA 2XRXA 2JO6A 1Q90C 2HMNA 3VCPA 1O7NA 3GZYA 4QUQA 3VCAA 2FYNC 1ULJA 1L0LE 5HL4A 4HM4A 1O7PA 2HMJA 4QDDA 3GTSA 4HJLA 1VF5D 2DE5D 2HMKA 2NUMA 4PD4E 3VMHD 4QDFB 3VMID 2QJPC 1SQPE 4EMJB 2QPZA 3D89A 2B24A 4P1CH 1EZVE 2B1XA 2JZAA 4HM3A
chains in the Genus database with same CATH superfamily
1G8KB 4P1BH 1BE3E 1NTME 1PP9E 2DE7D 2DE6D 3CX5E 1NTZE 3FOUA 4HM2A 4QUPA 1UUVA 4NBED 2YFIA 4QDFA 3GTEA 1UUWA 2E76D 1BCCE 1NDOA 2D2CD 2A06E 1NYKA 3H1HE 3EN1A 2NWFA 1KYOE 5CXMA 4HM1A 3H1IE 1KB9E 2E4QA 4OGQD 3H1JE 1P84E 3BCCE 2E4PA 4NBBD 2XSHA 2NVFA 3TGUE 1JM1A 1O7WA 1G8JB 4NBGD 2HMLA 4H13D 5KLVE 1L0NE 3CXHE 2Q3WA 3GCEA 2BMOA 1SJGA 1SQQE 3L73E 5BOKA 2NVGA 3H1LE 2ZYLA 3GOBA 1FQTA 3GZXA 5AEUA 2BCCE 3L71E 2NUKA 3CWBE 1SQXE 5KKZC 2QJKC 3GL0A 4NBAD 4NBFD 4H44D 1O7HA 2BMQA 2YVJB 1VCKA 4HM7A 4NBHD 4QURA 3L70E 4AAYB 2I7FA 1O7GA 1PPJE 3GKEA 4HM6A 4PV1D 5KLIC 1EG9A 2ZT9D 2CKFA 1SQVE 1RFSA 4HM5A 4NB8D 1NU1E 2NVEA 3GB4A 1NTKE 3H1KE 2XSOA 2BMRA 4NB9D 4NBDD 1VM9A 3L72E 4HM8A 3GL2A 2FYUE 1ZRTE 3L75E 4HKVA 2GBXA 2YFLA 2E74D 2YIUC 4AIVA 4NBCD 3DQYA 2YFJA 4H0LD 1WQLA 2HMOA 2HMMA 4QDCA 1RIEA 4U3FE 3EQQA 3AZCA 5AEWA 1O7MA 1SQBE 3L74E 3C0DA 2E75D 2GBWA 4QCKA 4HM0A 2IBZE 3VMGD 2QJYC 2XR8A 1ULIA 3N0QA 2XRXA 2JO6A 1Q90C 2HMNA 3VCPA 1O7NA 3GZYA 4QUQA 3VCAA 2FYNC 1ULJA 1L0LE 5HL4A 4HM4A 1O7PA 2HMJA 4QDDA 3GTSA 4HJLA 1VF5D 2DE5D 2HMKA 2NUMA 4PD4E 3VMHD 4QDFB 3VMID 2QJPC 1SQPE 4EMJB 2QPZA 3D89A 2B24A 4P1CH 1EZVE 2B1XA 2JZAA 4HM3A
chains in the Genus database with same CATH topology
1G8KB 4P1BH 1BE3E 1NTME 1PP9E 2DE7D 2DE6D 3CX5E 1NTZE 3FOUA 4HM2A 4QUPA 1UUVA 4NBED 2YFIA 4QDFA 3GTEA 1UUWA 2E76D 1BCCE 1NDOA 2D2CD 2A06E 1NYKA 3H1HE 3EN1A 2NWFA 1KYOE 5CXMA 4HM1A 3H1IE 1KB9E 2E4QA 4OGQD 3H1JE 1P84E 3BCCE 2E4PA 4NBBD 2XSHA 2NVFA 3TGUE 1JM1A 1O7WA 1G8JB 4NBGD 2HMLA 4H13D 5KLVE 1L0NE 3CXHE 2Q3WA 3GCEA 2BMOA 1SJGA 1SQQE 3L73E 5BOKA 2NVGA 3H1LE 2ZYLA 3GOBA 1FQTA 3GZXA 5AEUA 2BCCE 3L71E 2NUKA 3CWBE 1SQXE 5KKZC 2QJKC 3GL0A 4NBAD 4NBFD 4H44D 1O7HA 2BMQA 2YVJB 1VCKA 4HM7A 4NBHD 4QURA 3L70E 4AAYB 2I7FA 1O7GA 1PPJE 3GKEA 4HM6A 4PV1D 5KLIC 1EG9A 2ZT9D 2CKFA 1SQVE 1RFSA 4HM5A 4NB8D 1NU1E 2NVEA 3GB4A 1NTKE 3H1KE 2XSOA 2BMRA 4NB9D 4NBDD 1VM9A 3L72E 4HM8A 3GL2A 2FYUE 1ZRTE 3L75E 4HKVA 2GBXA 2YFLA 2E74D 2YIUC 4AIVA 4NBCD 3DQYA 2YFJA 4H0LD 1WQLA 2HMOA 2HMMA 4QDCA 1RIEA 4U3FE 3EQQA 3AZCA 5AEWA 1O7MA 1SQBE 3L74E 3C0DA 2E75D 2GBWA 4QCKA 4HM0A 2IBZE 3VMGD 2QJYC 2XR8A 1ULIA 3N0QA 2XRXA 2JO6A 1Q90C 2HMNA 3VCPA 1O7NA 3GZYA 4QUQA 3VCAA 2FYNC 1ULJA 1L0LE 5HL4A 4HM4A 1O7PA 2HMJA 4QDDA 3GTSA 4HJLA 1VF5D 2DE5D 2HMKA 2NUMA 4PD4E 3VMHD 4QDFB 3VMID 2QJPC 1SQPE 4EMJB 2QPZA 3D89A 2B24A 4P1CH 1EZVE 2B1XA 2JZAA 4HM3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1G8K B;  4P1B H;  1BE3 E;  1NTM E;  1PP9 E;  2DE7 D;  2DE6 D;  3CX5 E;  1NTZ E;  3FOU A;  4HM2 A;  4QUP A;  1UUV A;  4NBE D;  2YFI A;  4QDF A;  3GTE A;  1UUW A;  2E76 D;  1BCC E;  1NDO A;  2D2C D;  2A06 E;  1NYK A;  3H1H E;  3EN1 A;  2NWF A;  1KYO E;  5CXM A;  4HM1 A;  3H1I E;  1KB9 E;  2E4Q A;  4OGQ D;  3H1J E;  1P84 E;  3BCC E;  2E4P A;  4NBB D;  2XSH A;  2NVF A;  3TGU E;  1JM1 A;  1O7W A;  1G8J B;  4NBG D;  2HML A;  4H13 D;  5KLV E;  1L0N E;  3CXH E;  2Q3W A;  3GCE A;  2BMO A;  1SJG A;  1SQQ E;  3L73 E;  5BOK A;  2NVG A;  3H1L E;  2ZYL A;  3GOB A;  1FQT A;  3GZX A;  5AEU A;  2BCC E;  3L71 E;  2NUK A;  3CWB E;  1SQX E;  5KKZ C;  2QJK C;  3GL0 A;  4NBA D;  4NBF D;  4H44 D;  1O7H A;  2BMQ A;  2YVJ B;  1VCK A;  4HM7 A;  4NBH D;  4QUR A;  3L70 E;  4AAY B;  2I7F A;  1O7G A;  1PPJ E;  3GKE A;  4HM6 A;  4PV1 D;  5KLI C;  1EG9 A;  2ZT9 D;  2CKF A;  1SQV E;  1RFS A;  4HM5 A;  4NB8 D;  1NU1 E;  2NVE A;  3GB4 A;  1NTK E;  3H1K E;  2XSO A;  2BMR A;  4NB9 D;  4NBD D;  1VM9 A;  3L72 E;  4HM8 A;  3GL2 A;  2FYU E;  1ZRT E;  3L75 E;  4HKV A;  2GBX A;  2YFL A;  2E74 D;  2YIU C;  4AIV A;  4NBC D;  3DQY A;  2YFJ A;  4H0L D;  1WQL A;  2HMO A;  2HMM A;  4QDC A;  1RIE A;  4U3F E;  3EQQ A;  3AZC A;  5AEW A;  1O7M A;  1SQB E;  3L74 E;  3C0D A;  2E75 D;  2GBW A;  4QCK A;  4HM0 A;  2IBZ E;  3VMG D;  2QJY C;  2XR8 A;  1ULI A;  3N0Q A;  2XRX A;  2JO6 A;  1Q90 C;  2HMN A;  3VCP A;  1O7N A;  3GZY A;  4QUQ A;  3VCA A;  2FYN C;  1ULJ A;  1L0L E;  5HL4 A;  4HM4 A;  1O7P A;  2HMJ A;  4QDD A;  3GTS A;  4HJL A;  1VF5 D;  2DE5 D;  2HMK A;  2NUM A;  4PD4 E;  3VMH D;  4QDF B;  3VMI D;  2QJP C;  1SQP E;  4EMJ B;  2QPZ A;  3D89 A;  2B24 A;  4P1C H;  1EZV E;  2B1X A;  2JZA A;  4HM3 A; 
#chains in the Genus database with same CATH topology
 1G8K B;  4P1B H;  1BE3 E;  1NTM E;  1PP9 E;  2DE7 D;  2DE6 D;  3CX5 E;  1NTZ E;  3FOU A;  4HM2 A;  4QUP A;  1UUV A;  4NBE D;  2YFI A;  4QDF A;  3GTE A;  1UUW A;  2E76 D;  1BCC E;  1NDO A;  2D2C D;  2A06 E;  1NYK A;  3H1H E;  3EN1 A;  2NWF A;  1KYO E;  5CXM A;  4HM1 A;  3H1I E;  1KB9 E;  2E4Q A;  4OGQ D;  3H1J E;  1P84 E;  3BCC E;  2E4P A;  4NBB D;  2XSH A;  2NVF A;  3TGU E;  1JM1 A;  1O7W A;  1G8J B;  4NBG D;  2HML A;  4H13 D;  5KLV E;  1L0N E;  3CXH E;  2Q3W A;  3GCE A;  2BMO A;  1SJG A;  1SQQ E;  3L73 E;  5BOK A;  2NVG A;  3H1L E;  2ZYL A;  3GOB A;  1FQT A;  3GZX A;  5AEU A;  2BCC E;  3L71 E;  2NUK A;  3CWB E;  1SQX E;  5KKZ C;  2QJK C;  3GL0 A;  4NBA D;  4NBF D;  4H44 D;  1O7H A;  2BMQ A;  2YVJ B;  1VCK A;  4HM7 A;  4NBH D;  4QUR A;  3L70 E;  4AAY B;  2I7F A;  1O7G A;  1PPJ E;  3GKE A;  4HM6 A;  4PV1 D;  5KLI C;  1EG9 A;  2ZT9 D;  2CKF A;  1SQV E;  1RFS A;  4HM5 A;  4NB8 D;  1NU1 E;  2NVE A;  3GB4 A;  1NTK E;  3H1K E;  2XSO A;  2BMR A;  4NB9 D;  4NBD D;  1VM9 A;  3L72 E;  4HM8 A;  3GL2 A;  2FYU E;  1ZRT E;  3L75 E;  4HKV A;  2GBX A;  2YFL A;  2E74 D;  2YIU C;  4AIV A;  4NBC D;  3DQY A;  2YFJ A;  4H0L D;  1WQL A;  2HMO A;  2HMM A;  4QDC A;  1RIE A;  4U3F E;  3EQQ A;  3AZC A;  5AEW A;  1O7M A;  1SQB E;  3L74 E;  3C0D A;  2E75 D;  2GBW A;  4QCK A;  4HM0 A;  2IBZ E;  3VMG D;  2QJY C;  2XR8 A;  1ULI A;  3N0Q A;  2XRX A;  2JO6 A;  1Q90 C;  2HMN A;  3VCP A;  1O7N A;  3GZY A;  4QUQ A;  3VCA A;  2FYN C;  1ULJ A;  1L0L E;  5HL4 A;  4HM4 A;  1O7P A;  2HMJ A;  4QDD A;  3GTS A;  4HJL A;  1VF5 D;  2DE5 D;  2HMK A;  2NUM A;  4PD4 E;  3VMH D;  4QDF B;  3VMI D;  2QJP C;  1SQP E;  4EMJ B;  2QPZ A;  3D89 A;  2B24 A;  4P1C H;  1EZV E;  2B1X A;  2JZA A;  4HM3 A; 
#chains in the Genus database with same CATH homology
 1G8K B;  4P1B H;  1BE3 E;  1NTM E;  1PP9 E;  2DE7 D;  2DE6 D;  3CX5 E;  1NTZ E;  3FOU A;  4HM2 A;  4QUP A;  1UUV A;  4NBE D;  2YFI A;  4QDF A;  3GTE A;  1UUW A;  2E76 D;  1BCC E;  1NDO A;  2D2C D;  2A06 E;  1NYK A;  3H1H E;  3EN1 A;  2NWF A;  1KYO E;  5CXM A;  4HM1 A;  3H1I E;  1KB9 E;  2E4Q A;  4OGQ D;  3H1J E;  1P84 E;  3BCC E;  2E4P A;  4NBB D;  2XSH A;  2NVF A;  3TGU E;  1JM1 A;  1O7W A;  1G8J B;  4NBG D;  2HML A;  4H13 D;  5KLV E;  1L0N E;  3CXH E;  2Q3W A;  3GCE A;  2BMO A;  1SJG A;  1SQQ E;  3L73 E;  5BOK A;  2NVG A;  3H1L E;  2ZYL A;  3GOB A;  1FQT A;  3GZX A;  5AEU A;  2BCC E;  3L71 E;  2NUK A;  3CWB E;  1SQX E;  5KKZ C;  2QJK C;  3GL0 A;  4NBA D;  4NBF D;  4H44 D;  1O7H A;  2BMQ A;  2YVJ B;  1VCK A;  4HM7 A;  4NBH D;  4QUR A;  3L70 E;  4AAY B;  2I7F A;  1O7G A;  1PPJ E;  3GKE A;  4HM6 A;  4PV1 D;  5KLI C;  1EG9 A;  2ZT9 D;  2CKF A;  1SQV E;  1RFS A;  4HM5 A;  4NB8 D;  1NU1 E;  2NVE A;  3GB4 A;  1NTK E;  3H1K E;  2XSO A;  2BMR A;  4NB9 D;  4NBD D;  1VM9 A;  3L72 E;  4HM8 A;  3GL2 A;  2FYU E;  1ZRT E;  3L75 E;  4HKV A;  2GBX A;  2YFL A;  2E74 D;  2YIU C;  4AIV A;  4NBC D;  3DQY A;  2YFJ A;  4H0L D;  1WQL A;  2HMO A;  2HMM A;  4QDC A;  1RIE A;  4U3F E;  3EQQ A;  3AZC A;  5AEW A;  1O7M A;  1SQB E;  3L74 E;  3C0D A;  2E75 D;  2GBW A;  4QCK A;  4HM0 A;  2IBZ E;  3VMG D;  2QJY C;  2XR8 A;  1ULI A;  3N0Q A;  2XRX A;  2JO6 A;  1Q90 C;  2HMN A;  3VCP A;  1O7N A;  3GZY A;  4QUQ A;  3VCA A;  2FYN C;  1ULJ A;  1L0L E;  5HL4 A;  4HM4 A;  1O7P A;  2HMJ A;  4QDD A;  3GTS A;  4HJL A;  1VF5 D;  2DE5 D;  2HMK A;  2NUM A;  4PD4 E;  3VMH D;  4QDF B;  3VMI D;  2QJP C;  1SQP E;  4EMJ B;  2QPZ A;  3D89 A;  2B24 A;  4P1C H;  1EZV E;  2B1X A;  2JZA A;  4HM3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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