4NBBD

Carbazole- and oxygen-bound oxygenase with ile262 replaced by val and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
molecule keywords Terminal oxygenase component of carbazole
total genus 19
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbbD00
1NDOA 3GTEA 2YVJB 3GCEA 3C0DA 3BCCE 4HKVA 2QPZA 3VMHD 2YFLA 1O7PA 3D89A 2B1XA 2NUKA 3CWBE 2GBXA 4NB8D 2HMOA 2YIUC 4HM4A 2FYUE 4HJLA 2BMQA 1L0LE 5KKZC 2NWFA 4NBAD 1ULJA 1VF5D 2DE5D 5KLVE 1NTZE 4H13D 4NBGD 4AIVA 1RFSA 3N0QA 2B24A 3GTSA 4QDDA 4NB9D 1VCKA 1UUVA 5CXMA 1EG9A 2YFIA 1FQTA 2GBWA 3CXHE 3EN1A 4QUPA 2XRXA 2HMMA 2HMLA 2YFJA 2NVEA 2FYNC 2I7FA 4QURA 2QJPC 1WQLA 3GKEA 3L73E 2E4QA 2E75D 2HMJA 3TGUE 2JZAA 3VMID 5AEWA 1G8JB 4HM3A 3FOUA 4HM6A 4NBED 4HM8A 4U3FE 1SQVE 2XR8A 2Q3WA 3CX5E 4OGQD 1VM9A 4AAYB 4HM2A 2E74D 1G8KB 2A06E 4QCKA 1ZRTE 2BMRA 2ZYLA 4H0LD 4QDCA 1O7WA 3L74E 1UUWA 5AEUA 2DE6D 3GOBA 2XSOA 1SQPE 3GL2A 3GB4A 2QJKC 4PD4E 2BMOA 5BOKA 4NBDD 4P1BH 1O7GA 1O7NA 3H1KE 3L71E 4H44D 4QDFA 5KLIC 3VCAA 1JM1A 2BCCE 2JO6A 2E4PA 1PP9E 1KYOE 3GL0A 2IBZE 1NTKE 4HM0A 3H1HE 3VMGD 1NU1E 1ULIA 1O7MA 1SQBE 2D2CD 2NVFA 1EZVE 3H1IE 4EMJB 3L75E 3VCPA 2CKFA 1Q90C 4PV1D 4NBHD 1BCCE 4QUQA 3L72E 2NUMA 4HM5A 1NYKA 2HMNA 2QJYC 3L70E 4P1CH 1SQXE 3GZXA 3H1LE 1SJGA 3EQQA 4NBCD 2ZT9D 1RIEA 2E76D 1SQQE 4HM7A 4HM1A 2NVGA 4NBFD 1PPJE 1O7HA 3AZCA 1KB9E 1L0NE 2HMKA 3DQYA 3H1JE 1NTME 2XSHA 4QDFB 5HL4A 4NBBD 1BE3E 2DE7D 3GZYA 1P84E
chains in the Genus database with same CATH superfamily
1NDOA 3GTEA 2YVJB 3GCEA 3C0DA 3BCCE 4HKVA 2QPZA 3VMHD 2YFLA 1O7PA 3D89A 2B1XA 2NUKA 3CWBE 2GBXA 4NB8D 2HMOA 2YIUC 4HM4A 2FYUE 4HJLA 2BMQA 1L0LE 5KKZC 2NWFA 4NBAD 1ULJA 1VF5D 2DE5D 5KLVE 1NTZE 4H13D 4NBGD 4AIVA 1RFSA 3N0QA 2B24A 3GTSA 4QDDA 4NB9D 1VCKA 1UUVA 5CXMA 1EG9A 2YFIA 1FQTA 2GBWA 3CXHE 3EN1A 4QUPA 2XRXA 2HMMA 2HMLA 2YFJA 2NVEA 2FYNC 2I7FA 4QURA 2QJPC 1WQLA 3GKEA 3L73E 2E4QA 2E75D 2HMJA 3TGUE 2JZAA 3VMID 5AEWA 1G8JB 4HM3A 3FOUA 4HM6A 4NBED 4HM8A 4U3FE 1SQVE 2XR8A 2Q3WA 3CX5E 4OGQD 1VM9A 4AAYB 4HM2A 2E74D 1G8KB 2A06E 4QCKA 1ZRTE 2BMRA 2ZYLA 4H0LD 4QDCA 1O7WA 3L74E 1UUWA 5AEUA 2DE6D 3GOBA 2XSOA 1SQPE 3GL2A 3GB4A 2QJKC 4PD4E 2BMOA 5BOKA 4NBDD 4P1BH 1O7GA 1O7NA 3H1KE 3L71E 4H44D 4QDFA 5KLIC 3VCAA 1JM1A 2BCCE 2JO6A 2E4PA 1PP9E 1KYOE 3GL0A 2IBZE 1NTKE 4HM0A 3H1HE 3VMGD 1NU1E 1ULIA 1O7MA 1SQBE 2D2CD 2NVFA 1EZVE 3H1IE 4EMJB 3L75E 3VCPA 2CKFA 1Q90C 4PV1D 4NBHD 1BCCE 4QUQA 3L72E 2NUMA 4HM5A 1NYKA 2HMNA 2QJYC 3L70E 4P1CH 1SQXE 3GZXA 3H1LE 1SJGA 3EQQA 4NBCD 2ZT9D 1RIEA 2E76D 1SQQE 4HM7A 4HM1A 2NVGA 4NBFD 1PPJE 1O7HA 3AZCA 1KB9E 1L0NE 2HMKA 3DQYA 3H1JE 1NTME 2XSHA 4QDFB 5HL4A 4NBBD 1BE3E 2DE7D 3GZYA 1P84E
chains in the Genus database with same CATH topology
1NDOA 3GTEA 2YVJB 3GCEA 3C0DA 3BCCE 4HKVA 2QPZA 3VMHD 2YFLA 1O7PA 3D89A 2B1XA 2NUKA 3CWBE 2GBXA 4NB8D 2HMOA 2YIUC 4HM4A 2FYUE 4HJLA 2BMQA 1L0LE 5KKZC 2NWFA 4NBAD 1ULJA 1VF5D 2DE5D 5KLVE 1NTZE 4H13D 4NBGD 4AIVA 1RFSA 3N0QA 2B24A 3GTSA 4QDDA 4NB9D 1VCKA 1UUVA 5CXMA 1EG9A 2YFIA 1FQTA 2GBWA 3CXHE 3EN1A 4QUPA 2XRXA 2HMMA 2HMLA 2YFJA 2NVEA 2FYNC 2I7FA 4QURA 2QJPC 1WQLA 3GKEA 3L73E 2E4QA 2E75D 2HMJA 3TGUE 2JZAA 3VMID 5AEWA 1G8JB 4HM3A 3FOUA 4HM6A 4NBED 4HM8A 4U3FE 1SQVE 2XR8A 2Q3WA 3CX5E 4OGQD 1VM9A 4AAYB 4HM2A 2E74D 1G8KB 2A06E 4QCKA 1ZRTE 2BMRA 2ZYLA 4H0LD 4QDCA 1O7WA 3L74E 1UUWA 5AEUA 2DE6D 3GOBA 2XSOA 1SQPE 3GL2A 3GB4A 2QJKC 4PD4E 2BMOA 5BOKA 4NBDD 4P1BH 1O7GA 1O7NA 3H1KE 3L71E 4H44D 4QDFA 5KLIC 3VCAA 1JM1A 2BCCE 2JO6A 2E4PA 1PP9E 1KYOE 3GL0A 2IBZE 1NTKE 4HM0A 3H1HE 3VMGD 1NU1E 1ULIA 1O7MA 1SQBE 2D2CD 2NVFA 1EZVE 3H1IE 4EMJB 3L75E 3VCPA 2CKFA 1Q90C 4PV1D 4NBHD 1BCCE 4QUQA 3L72E 2NUMA 4HM5A 1NYKA 2HMNA 2QJYC 3L70E 4P1CH 1SQXE 3GZXA 3H1LE 1SJGA 3EQQA 4NBCD 2ZT9D 1RIEA 2E76D 1SQQE 4HM7A 4HM1A 2NVGA 4NBFD 1PPJE 1O7HA 3AZCA 1KB9E 1L0NE 2HMKA 3DQYA 3H1JE 1NTME 2XSHA 4QDFB 5HL4A 4NBBD 1BE3E 2DE7D 3GZYA 1P84E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NDO A;  3GTE A;  2YVJ B;  3GCE A;  3C0D A;  3BCC E;  4HKV A;  2QPZ A;  3VMH D;  2YFL A;  1O7P A;  3D89 A;  2B1X A;  2NUK A;  3CWB E;  2GBX A;  4NB8 D;  2HMO A;  2YIU C;  4HM4 A;  2FYU E;  4HJL A;  2BMQ A;  1L0L E;  5KKZ C;  2NWF A;  4NBA D;  1ULJ A;  1VF5 D;  2DE5 D;  5KLV E;  1NTZ E;  4H13 D;  4NBG D;  4AIV A;  1RFS A;  3N0Q A;  2B24 A;  3GTS A;  4QDD A;  4NB9 D;  1VCK A;  1UUV A;  5CXM A;  1EG9 A;  2YFI A;  1FQT A;  2GBW A;  3CXH E;  3EN1 A;  4QUP A;  2XRX A;  2HMM A;  2HML A;  2YFJ A;  2NVE A;  2FYN C;  2I7F A;  4QUR A;  2QJP C;  1WQL A;  3GKE A;  3L73 E;  2E4Q A;  2E75 D;  2HMJ A;  3TGU E;  2JZA A;  3VMI D;  5AEW A;  1G8J B;  4HM3 A;  3FOU A;  4HM6 A;  4NBE D;  4HM8 A;  4U3F E;  1SQV E;  2XR8 A;  2Q3W A;  3CX5 E;  4OGQ D;  1VM9 A;  4AAY B;  4HM2 A;  2E74 D;  1G8K B;  2A06 E;  4QCK A;  1ZRT E;  2BMR A;  2ZYL A;  4H0L D;  4QDC A;  1O7W A;  3L74 E;  1UUW A;  5AEU A;  2DE6 D;  3GOB A;  2XSO A;  1SQP E;  3GL2 A;  3GB4 A;  2QJK C;  4PD4 E;  2BMO A;  5BOK A;  4NBD D;  4P1B H;  1O7G A;  1O7N A;  3H1K E;  3L71 E;  4H44 D;  4QDF A;  5KLI C;  3VCA A;  1JM1 A;  2BCC E;  2JO6 A;  2E4P A;  1PP9 E;  1KYO E;  3GL0 A;  2IBZ E;  1NTK E;  4HM0 A;  3H1H E;  3VMG D;  1NU1 E;  1ULI A;  1O7M A;  1SQB E;  2D2C D;  2NVF A;  1EZV E;  3H1I E;  4EMJ B;  3L75 E;  3VCP A;  2CKF A;  1Q90 C;  4PV1 D;  4NBH D;  1BCC E;  4QUQ A;  3L72 E;  2NUM A;  4HM5 A;  1NYK A;  2HMN A;  2QJY C;  3L70 E;  4P1C H;  1SQX E;  3GZX A;  3H1L E;  1SJG A;  3EQQ A;  4NBC D;  2ZT9 D;  1RIE A;  2E76 D;  1SQQ E;  4HM7 A;  4HM1 A;  2NVG A;  4NBF D;  1PPJ E;  1O7H A;  3AZC A;  1KB9 E;  1L0N E;  2HMK A;  3DQY A;  3H1J E;  1NTM E;  2XSH A;  4QDF B;  5HL4 A;  4NBB D;  1BE3 E;  2DE7 D;  3GZY A;  1P84 E; 
#chains in the Genus database with same CATH topology
 1NDO A;  3GTE A;  2YVJ B;  3GCE A;  3C0D A;  3BCC E;  4HKV A;  2QPZ A;  3VMH D;  2YFL A;  1O7P A;  3D89 A;  2B1X A;  2NUK A;  3CWB E;  2GBX A;  4NB8 D;  2HMO A;  2YIU C;  4HM4 A;  2FYU E;  4HJL A;  2BMQ A;  1L0L E;  5KKZ C;  2NWF A;  4NBA D;  1ULJ A;  1VF5 D;  2DE5 D;  5KLV E;  1NTZ E;  4H13 D;  4NBG D;  4AIV A;  1RFS A;  3N0Q A;  2B24 A;  3GTS A;  4QDD A;  4NB9 D;  1VCK A;  1UUV A;  5CXM A;  1EG9 A;  2YFI A;  1FQT A;  2GBW A;  3CXH E;  3EN1 A;  4QUP A;  2XRX A;  2HMM A;  2HML A;  2YFJ A;  2NVE A;  2FYN C;  2I7F A;  4QUR A;  2QJP C;  1WQL A;  3GKE A;  3L73 E;  2E4Q A;  2E75 D;  2HMJ A;  3TGU E;  2JZA A;  3VMI D;  5AEW A;  1G8J B;  4HM3 A;  3FOU A;  4HM6 A;  4NBE D;  4HM8 A;  4U3F E;  1SQV E;  2XR8 A;  2Q3W A;  3CX5 E;  4OGQ D;  1VM9 A;  4AAY B;  4HM2 A;  2E74 D;  1G8K B;  2A06 E;  4QCK A;  1ZRT E;  2BMR A;  2ZYL A;  4H0L D;  4QDC A;  1O7W A;  3L74 E;  1UUW A;  5AEU A;  2DE6 D;  3GOB A;  2XSO A;  1SQP E;  3GL2 A;  3GB4 A;  2QJK C;  4PD4 E;  2BMO A;  5BOK A;  4NBD D;  4P1B H;  1O7G A;  1O7N A;  3H1K E;  3L71 E;  4H44 D;  4QDF A;  5KLI C;  3VCA A;  1JM1 A;  2BCC E;  2JO6 A;  2E4P A;  1PP9 E;  1KYO E;  3GL0 A;  2IBZ E;  1NTK E;  4HM0 A;  3H1H E;  3VMG D;  1NU1 E;  1ULI A;  1O7M A;  1SQB E;  2D2C D;  2NVF A;  1EZV E;  3H1I E;  4EMJ B;  3L75 E;  3VCP A;  2CKF A;  1Q90 C;  4PV1 D;  4NBH D;  1BCC E;  4QUQ A;  3L72 E;  2NUM A;  4HM5 A;  1NYK A;  2HMN A;  2QJY C;  3L70 E;  4P1C H;  1SQX E;  3GZX A;  3H1L E;  1SJG A;  3EQQ A;  4NBC D;  2ZT9 D;  1RIE A;  2E76 D;  1SQQ E;  4HM7 A;  4HM1 A;  2NVG A;  4NBF D;  1PPJ E;  1O7H A;  3AZC A;  1KB9 E;  1L0N E;  2HMK A;  3DQY A;  3H1J E;  1NTM E;  2XSH A;  4QDF B;  5HL4 A;  4NBB D;  1BE3 E;  2DE7 D;  3GZY A;  1P84 E; 
#chains in the Genus database with same CATH homology
 1NDO A;  3GTE A;  2YVJ B;  3GCE A;  3C0D A;  3BCC E;  4HKV A;  2QPZ A;  3VMH D;  2YFL A;  1O7P A;  3D89 A;  2B1X A;  2NUK A;  3CWB E;  2GBX A;  4NB8 D;  2HMO A;  2YIU C;  4HM4 A;  2FYU E;  4HJL A;  2BMQ A;  1L0L E;  5KKZ C;  2NWF A;  4NBA D;  1ULJ A;  1VF5 D;  2DE5 D;  5KLV E;  1NTZ E;  4H13 D;  4NBG D;  4AIV A;  1RFS A;  3N0Q A;  2B24 A;  3GTS A;  4QDD A;  4NB9 D;  1VCK A;  1UUV A;  5CXM A;  1EG9 A;  2YFI A;  1FQT A;  2GBW A;  3CXH E;  3EN1 A;  4QUP A;  2XRX A;  2HMM A;  2HML A;  2YFJ A;  2NVE A;  2FYN C;  2I7F A;  4QUR A;  2QJP C;  1WQL A;  3GKE A;  3L73 E;  2E4Q A;  2E75 D;  2HMJ A;  3TGU E;  2JZA A;  3VMI D;  5AEW A;  1G8J B;  4HM3 A;  3FOU A;  4HM6 A;  4NBE D;  4HM8 A;  4U3F E;  1SQV E;  2XR8 A;  2Q3W A;  3CX5 E;  4OGQ D;  1VM9 A;  4AAY B;  4HM2 A;  2E74 D;  1G8K B;  2A06 E;  4QCK A;  1ZRT E;  2BMR A;  2ZYL A;  4H0L D;  4QDC A;  1O7W A;  3L74 E;  1UUW A;  5AEU A;  2DE6 D;  3GOB A;  2XSO A;  1SQP E;  3GL2 A;  3GB4 A;  2QJK C;  4PD4 E;  2BMO A;  5BOK A;  4NBD D;  4P1B H;  1O7G A;  1O7N A;  3H1K E;  3L71 E;  4H44 D;  4QDF A;  5KLI C;  3VCA A;  1JM1 A;  2BCC E;  2JO6 A;  2E4P A;  1PP9 E;  1KYO E;  3GL0 A;  2IBZ E;  1NTK E;  4HM0 A;  3H1H E;  3VMG D;  1NU1 E;  1ULI A;  1O7M A;  1SQB E;  2D2C D;  2NVF A;  1EZV E;  3H1I E;  4EMJ B;  3L75 E;  3VCP A;  2CKF A;  1Q90 C;  4PV1 D;  4NBH D;  1BCC E;  4QUQ A;  3L72 E;  2NUM A;  4HM5 A;  1NYK A;  2HMN A;  2QJY C;  3L70 E;  4P1C H;  1SQX E;  3GZX A;  3H1L E;  1SJG A;  3EQQ A;  4NBC D;  2ZT9 D;  1RIE A;  2E76 D;  1SQQ E;  4HM7 A;  4HM1 A;  2NVG A;  4NBF D;  1PPJ E;  1O7H A;  3AZC A;  1KB9 E;  1L0N E;  2HMK A;  3DQY A;  3H1J E;  1NTM E;  2XSH A;  4QDF B;  5HL4 A;  4NBB D;  1BE3 E;  2DE7 D;  3GZY A;  1P84 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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