4NBDD

Carbazole-bound oxygenase with phe275 replaced by trp and ferredoxin complex of carbazole 1,9a-dioxygenase (form2)
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
103
structure length
103
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
molecule keywords Terminal oxygenase component of carbazole
total genus 17
structure length 103
sequence length 103
chains with identical sequence E
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbdD00
2BCCE 3GL2A 4NBHD 2E74D 4PD4E 1L0LE 1ZRTE 3GL0A 3VMHD 2BMOA 1O7MA 1VM9A 4EMJB 1RFSA 1PP9E 1ULIA 1O7PA 2GBXA 3L73E 2XSOA 2E4PA 4P1CH 3GTSA 2YIUC 4U3FE 1O7WA 2BMRA 4HKVA 1NTKE 1NTZE 1RIEA 1SJGA 4H44D 3H1HE 1NYKA 2B1XA 4QDFA 3CX5E 2NUKA 4NB9D 3GCEA 1KYOE 3CWBE 4HM4A 4QURA 2DE7D 2JO6A 3GB4A 3CXHE 3VCPA 1NU1E 2D2CD 3C0DA 1EZVE 4HM0A 1NTME 2QJYC 4NBAD 2E76D 5KLIC 2FYUE 4NBED 1EG9A 4NBFD 4HM1A 4QUPA 2QJPC 3VMGD 4HM3A 4OGQD 1FQTA 3BCCE 2NWFA 1JM1A 2QPZA 4H0LD 2ZYLA 1VCKA 4H13D 4AAYB 3VCAA 5HL4A 1UUWA 1WQLA 2HMJA 1O7GA 1UUVA 3GOBA 4QUQA 2NVGA 4PV1D 2E75D 4HJLA 2YFLA 3D89A 4HM2A 4QCKA 3H1KE 1O7HA 5AEUA 4HM7A 3GZXA 1Q90C 1NDOA 1BCCE 2NUMA 2DE5D 4HM6A 3DQYA 1O7NA 1VF5D 2JZAA 4NBBD 2DE6D 2Q3WA 5KLVE 2YFIA 5CXMA 1SQVE 2E4QA 3AZCA 3L74E 2YFJA 4NBDD 3L72E 3L71E 2FYNC 4AIVA 2CKFA 1BE3E 2GBWA 1G8KB 3GZYA 1G8JB 3EN1A 1KB9E 4HM8A 2IBZE 5BOKA 1L0NE 4NB8D 1SQQE 2HMNA 2XRXA 2YVJB 3H1LE 4NBGD 4QDCA 3TGUE 3FOUA 4HM5A 2HMKA 1P84E 2QJKC 3VMID 1SQXE 4P1BH 3L75E 2HMMA 2B24A 3N0QA 3H1IE 4NBCD 3EQQA 2A06E 5KKZC 1SQBE 2HMOA 4QDFB 5AEWA 1SQPE 2HMLA 2NVFA 3GKEA 3L70E 3GTEA 1PPJE 1ULJA 2BMQA 2NVEA 2XR8A 4QDDA 3H1JE 2ZT9D 2I7FA 2XSHA
chains in the Genus database with same CATH superfamily
2BCCE 3GL2A 4NBHD 2E74D 4PD4E 1L0LE 1ZRTE 3GL0A 3VMHD 2BMOA 1O7MA 1VM9A 4EMJB 1RFSA 1PP9E 1ULIA 1O7PA 2GBXA 3L73E 2XSOA 2E4PA 4P1CH 3GTSA 2YIUC 4U3FE 1O7WA 2BMRA 4HKVA 1NTKE 1NTZE 1RIEA 1SJGA 4H44D 3H1HE 1NYKA 2B1XA 4QDFA 3CX5E 2NUKA 4NB9D 3GCEA 1KYOE 3CWBE 4HM4A 4QURA 2DE7D 2JO6A 3GB4A 3CXHE 3VCPA 1NU1E 2D2CD 3C0DA 1EZVE 4HM0A 1NTME 2QJYC 4NBAD 2E76D 5KLIC 2FYUE 4NBED 1EG9A 4NBFD 4HM1A 4QUPA 2QJPC 3VMGD 4HM3A 4OGQD 1FQTA 3BCCE 2NWFA 1JM1A 2QPZA 4H0LD 2ZYLA 1VCKA 4H13D 4AAYB 3VCAA 5HL4A 1UUWA 1WQLA 2HMJA 1O7GA 1UUVA 3GOBA 4QUQA 2NVGA 4PV1D 2E75D 4HJLA 2YFLA 3D89A 4HM2A 4QCKA 3H1KE 1O7HA 5AEUA 4HM7A 3GZXA 1Q90C 1NDOA 1BCCE 2NUMA 2DE5D 4HM6A 3DQYA 1O7NA 1VF5D 2JZAA 4NBBD 2DE6D 2Q3WA 5KLVE 2YFIA 5CXMA 1SQVE 2E4QA 3AZCA 3L74E 2YFJA 4NBDD 3L72E 3L71E 2FYNC 4AIVA 2CKFA 1BE3E 2GBWA 1G8KB 3GZYA 1G8JB 3EN1A 1KB9E 4HM8A 2IBZE 5BOKA 1L0NE 4NB8D 1SQQE 2HMNA 2XRXA 2YVJB 3H1LE 4NBGD 4QDCA 3TGUE 3FOUA 4HM5A 2HMKA 1P84E 2QJKC 3VMID 1SQXE 4P1BH 3L75E 2HMMA 2B24A 3N0QA 3H1IE 4NBCD 3EQQA 2A06E 5KKZC 1SQBE 2HMOA 4QDFB 5AEWA 1SQPE 2HMLA 2NVFA 3GKEA 3L70E 3GTEA 1PPJE 1ULJA 2BMQA 2NVEA 2XR8A 4QDDA 3H1JE 2ZT9D 2I7FA 2XSHA
chains in the Genus database with same CATH topology
2BCCE 3GL2A 4NBHD 2E74D 4PD4E 1L0LE 1ZRTE 3GL0A 3VMHD 2BMOA 1O7MA 1VM9A 4EMJB 1RFSA 1PP9E 1ULIA 1O7PA 2GBXA 3L73E 2XSOA 2E4PA 4P1CH 3GTSA 2YIUC 4U3FE 1O7WA 2BMRA 4HKVA 1NTKE 1NTZE 1RIEA 1SJGA 4H44D 3H1HE 1NYKA 2B1XA 4QDFA 3CX5E 2NUKA 4NB9D 3GCEA 1KYOE 3CWBE 4HM4A 4QURA 2DE7D 2JO6A 3GB4A 3CXHE 3VCPA 1NU1E 2D2CD 3C0DA 1EZVE 4HM0A 1NTME 2QJYC 4NBAD 2E76D 5KLIC 2FYUE 4NBED 1EG9A 4NBFD 4HM1A 4QUPA 2QJPC 3VMGD 4HM3A 4OGQD 1FQTA 3BCCE 2NWFA 1JM1A 2QPZA 4H0LD 2ZYLA 1VCKA 4H13D 4AAYB 3VCAA 5HL4A 1UUWA 1WQLA 2HMJA 1O7GA 1UUVA 3GOBA 4QUQA 2NVGA 4PV1D 2E75D 4HJLA 2YFLA 3D89A 4HM2A 4QCKA 3H1KE 1O7HA 5AEUA 4HM7A 3GZXA 1Q90C 1NDOA 1BCCE 2NUMA 2DE5D 4HM6A 3DQYA 1O7NA 1VF5D 2JZAA 4NBBD 2DE6D 2Q3WA 5KLVE 2YFIA 5CXMA 1SQVE 2E4QA 3AZCA 3L74E 2YFJA 4NBDD 3L72E 3L71E 2FYNC 4AIVA 2CKFA 1BE3E 2GBWA 1G8KB 3GZYA 1G8JB 3EN1A 1KB9E 4HM8A 2IBZE 5BOKA 1L0NE 4NB8D 1SQQE 2HMNA 2XRXA 2YVJB 3H1LE 4NBGD 4QDCA 3TGUE 3FOUA 4HM5A 2HMKA 1P84E 2QJKC 3VMID 1SQXE 4P1BH 3L75E 2HMMA 2B24A 3N0QA 3H1IE 4NBCD 3EQQA 2A06E 5KKZC 1SQBE 2HMOA 4QDFB 5AEWA 1SQPE 2HMLA 2NVFA 3GKEA 3L70E 3GTEA 1PPJE 1ULJA 2BMQA 2NVEA 2XR8A 4QDDA 3H1JE 2ZT9D 2I7FA 2XSHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BCC E;  3GL2 A;  4NBH D;  2E74 D;  4PD4 E;  1L0L E;  1ZRT E;  3GL0 A;  3VMH D;  2BMO A;  1O7M A;  1VM9 A;  4EMJ B;  1RFS A;  1PP9 E;  1ULI A;  1O7P A;  2GBX A;  3L73 E;  2XSO A;  2E4P A;  4P1C H;  3GTS A;  2YIU C;  4U3F E;  1O7W A;  2BMR A;  4HKV A;  1NTK E;  1NTZ E;  1RIE A;  1SJG A;  4H44 D;  3H1H E;  1NYK A;  2B1X A;  4QDF A;  3CX5 E;  2NUK A;  4NB9 D;  3GCE A;  1KYO E;  3CWB E;  4HM4 A;  4QUR A;  2DE7 D;  2JO6 A;  3GB4 A;  3CXH E;  3VCP A;  1NU1 E;  2D2C D;  3C0D A;  1EZV E;  4HM0 A;  1NTM E;  2QJY C;  4NBA D;  2E76 D;  5KLI C;  2FYU E;  4NBE D;  1EG9 A;  4NBF D;  4HM1 A;  4QUP A;  2QJP C;  3VMG D;  4HM3 A;  4OGQ D;  1FQT A;  3BCC E;  2NWF A;  1JM1 A;  2QPZ A;  4H0L D;  2ZYL A;  1VCK A;  4H13 D;  4AAY B;  3VCA A;  5HL4 A;  1UUW A;  1WQL A;  2HMJ A;  1O7G A;  1UUV A;  3GOB A;  4QUQ A;  2NVG A;  4PV1 D;  2E75 D;  4HJL A;  2YFL A;  3D89 A;  4HM2 A;  4QCK A;  3H1K E;  1O7H A;  5AEU A;  4HM7 A;  3GZX A;  1Q90 C;  1NDO A;  1BCC E;  2NUM A;  2DE5 D;  4HM6 A;  3DQY A;  1O7N A;  1VF5 D;  2JZA A;  4NBB D;  2DE6 D;  2Q3W A;  5KLV E;  2YFI A;  5CXM A;  1SQV E;  2E4Q A;  3AZC A;  3L74 E;  2YFJ A;  4NBD D;  3L72 E;  3L71 E;  2FYN C;  4AIV A;  2CKF A;  1BE3 E;  2GBW A;  1G8K B;  3GZY A;  1G8J B;  3EN1 A;  1KB9 E;  4HM8 A;  2IBZ E;  5BOK A;  1L0N E;  4NB8 D;  1SQQ E;  2HMN A;  2XRX A;  2YVJ B;  3H1L E;  4NBG D;  4QDC A;  3TGU E;  3FOU A;  4HM5 A;  2HMK A;  1P84 E;  2QJK C;  3VMI D;  1SQX E;  4P1B H;  3L75 E;  2HMM A;  2B24 A;  3N0Q A;  3H1I E;  4NBC D;  3EQQ A;  2A06 E;  5KKZ C;  1SQB E;  2HMO A;  4QDF B;  5AEW A;  1SQP E;  2HML A;  2NVF A;  3GKE A;  3L70 E;  3GTE A;  1PPJ E;  1ULJ A;  2BMQ A;  2NVE A;  2XR8 A;  4QDD A;  3H1J E;  2ZT9 D;  2I7F A;  2XSH A; 
#chains in the Genus database with same CATH topology
 2BCC E;  3GL2 A;  4NBH D;  2E74 D;  4PD4 E;  1L0L E;  1ZRT E;  3GL0 A;  3VMH D;  2BMO A;  1O7M A;  1VM9 A;  4EMJ B;  1RFS A;  1PP9 E;  1ULI A;  1O7P A;  2GBX A;  3L73 E;  2XSO A;  2E4P A;  4P1C H;  3GTS A;  2YIU C;  4U3F E;  1O7W A;  2BMR A;  4HKV A;  1NTK E;  1NTZ E;  1RIE A;  1SJG A;  4H44 D;  3H1H E;  1NYK A;  2B1X A;  4QDF A;  3CX5 E;  2NUK A;  4NB9 D;  3GCE A;  1KYO E;  3CWB E;  4HM4 A;  4QUR A;  2DE7 D;  2JO6 A;  3GB4 A;  3CXH E;  3VCP A;  1NU1 E;  2D2C D;  3C0D A;  1EZV E;  4HM0 A;  1NTM E;  2QJY C;  4NBA D;  2E76 D;  5KLI C;  2FYU E;  4NBE D;  1EG9 A;  4NBF D;  4HM1 A;  4QUP A;  2QJP C;  3VMG D;  4HM3 A;  4OGQ D;  1FQT A;  3BCC E;  2NWF A;  1JM1 A;  2QPZ A;  4H0L D;  2ZYL A;  1VCK A;  4H13 D;  4AAY B;  3VCA A;  5HL4 A;  1UUW A;  1WQL A;  2HMJ A;  1O7G A;  1UUV A;  3GOB A;  4QUQ A;  2NVG A;  4PV1 D;  2E75 D;  4HJL A;  2YFL A;  3D89 A;  4HM2 A;  4QCK A;  3H1K E;  1O7H A;  5AEU A;  4HM7 A;  3GZX A;  1Q90 C;  1NDO A;  1BCC E;  2NUM A;  2DE5 D;  4HM6 A;  3DQY A;  1O7N A;  1VF5 D;  2JZA A;  4NBB D;  2DE6 D;  2Q3W A;  5KLV E;  2YFI A;  5CXM A;  1SQV E;  2E4Q A;  3AZC A;  3L74 E;  2YFJ A;  4NBD D;  3L72 E;  3L71 E;  2FYN C;  4AIV A;  2CKF A;  1BE3 E;  2GBW A;  1G8K B;  3GZY A;  1G8J B;  3EN1 A;  1KB9 E;  4HM8 A;  2IBZ E;  5BOK A;  1L0N E;  4NB8 D;  1SQQ E;  2HMN A;  2XRX A;  2YVJ B;  3H1L E;  4NBG D;  4QDC A;  3TGU E;  3FOU A;  4HM5 A;  2HMK A;  1P84 E;  2QJK C;  3VMI D;  1SQX E;  4P1B H;  3L75 E;  2HMM A;  2B24 A;  3N0Q A;  3H1I E;  4NBC D;  3EQQ A;  2A06 E;  5KKZ C;  1SQB E;  2HMO A;  4QDF B;  5AEW A;  1SQP E;  2HML A;  2NVF A;  3GKE A;  3L70 E;  3GTE A;  1PPJ E;  1ULJ A;  2BMQ A;  2NVE A;  2XR8 A;  4QDD A;  3H1J E;  2ZT9 D;  2I7F A;  2XSH A; 
#chains in the Genus database with same CATH homology
 2BCC E;  3GL2 A;  4NBH D;  2E74 D;  4PD4 E;  1L0L E;  1ZRT E;  3GL0 A;  3VMH D;  2BMO A;  1O7M A;  1VM9 A;  4EMJ B;  1RFS A;  1PP9 E;  1ULI A;  1O7P A;  2GBX A;  3L73 E;  2XSO A;  2E4P A;  4P1C H;  3GTS A;  2YIU C;  4U3F E;  1O7W A;  2BMR A;  4HKV A;  1NTK E;  1NTZ E;  1RIE A;  1SJG A;  4H44 D;  3H1H E;  1NYK A;  2B1X A;  4QDF A;  3CX5 E;  2NUK A;  4NB9 D;  3GCE A;  1KYO E;  3CWB E;  4HM4 A;  4QUR A;  2DE7 D;  2JO6 A;  3GB4 A;  3CXH E;  3VCP A;  1NU1 E;  2D2C D;  3C0D A;  1EZV E;  4HM0 A;  1NTM E;  2QJY C;  4NBA D;  2E76 D;  5KLI C;  2FYU E;  4NBE D;  1EG9 A;  4NBF D;  4HM1 A;  4QUP A;  2QJP C;  3VMG D;  4HM3 A;  4OGQ D;  1FQT A;  3BCC E;  2NWF A;  1JM1 A;  2QPZ A;  4H0L D;  2ZYL A;  1VCK A;  4H13 D;  4AAY B;  3VCA A;  5HL4 A;  1UUW A;  1WQL A;  2HMJ A;  1O7G A;  1UUV A;  3GOB A;  4QUQ A;  2NVG A;  4PV1 D;  2E75 D;  4HJL A;  2YFL A;  3D89 A;  4HM2 A;  4QCK A;  3H1K E;  1O7H A;  5AEU A;  4HM7 A;  3GZX A;  1Q90 C;  1NDO A;  1BCC E;  2NUM A;  2DE5 D;  4HM6 A;  3DQY A;  1O7N A;  1VF5 D;  2JZA A;  4NBB D;  2DE6 D;  2Q3W A;  5KLV E;  2YFI A;  5CXM A;  1SQV E;  2E4Q A;  3AZC A;  3L74 E;  2YFJ A;  4NBD D;  3L72 E;  3L71 E;  2FYN C;  4AIV A;  2CKF A;  1BE3 E;  2GBW A;  1G8K B;  3GZY A;  1G8J B;  3EN1 A;  1KB9 E;  4HM8 A;  2IBZ E;  5BOK A;  1L0N E;  4NB8 D;  1SQQ E;  2HMN A;  2XRX A;  2YVJ B;  3H1L E;  4NBG D;  4QDC A;  3TGU E;  3FOU A;  4HM5 A;  2HMK A;  1P84 E;  2QJK C;  3VMI D;  1SQX E;  4P1B H;  3L75 E;  2HMM A;  2B24 A;  3N0Q A;  3H1I E;  4NBC D;  3EQQ A;  2A06 E;  5KKZ C;  1SQB E;  2HMO A;  4QDF B;  5AEW A;  1SQP E;  2HML A;  2NVF A;  3GKE A;  3L70 E;  3GTE A;  1PPJ E;  1ULJ A;  2BMQ A;  2NVE A;  2XR8 A;  4QDD A;  3H1J E;  2ZT9 D;  2I7F A;  2XSH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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