4NBED

Fluorene-bound oxygenase with phe275 replaced by trp and ferredoxin complex of carbazole 1,9a-dioxygenase (form2)
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
103
structure length
103
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
molecule keywords Terminal oxygenase component of carbazole
total genus 17
structure length 103
sequence length 103
chains with identical sequence E
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbeD00
2QPZA 5AEWA 2HMMA 1KB9E 3VCAA 2E76D 3BCCE 5KLVE 4H0LD 1SJGA 4HM6A 1SQBE 1O7GA 2XSHA 1RIEA 1UUWA 2HMLA 2NWFA 4QDCA 2DE7D 2BMQA 1NDOA 2NUKA 5HL4A 1O7HA 1RFSA 1UUVA 2GBWA 4NB9D 3GKEA 1O7WA 2Q3WA 2HMNA 3L72E 3C0DA 3H1JE 2QJYC 1ZRTE 3L73E 4HM5A 2NUMA 2JO6A 2QJKC 2QJPC 2FYUE 1ULJA 1NTME 1PPJE 4NBHD 3DQYA 2DE6D 3L75E 2ZT9D 3H1LE 1NU1E 2DE5D 1G8JB 3TGUE 4NBDD 3L71E 4P1BH 4HM4A 3EN1A 1SQVE 3VCPA 4QUQA 2JZAA 4HKVA 2YFJA 5CXMA 3VMID 4QUPA 3H1KE 2FYNC 1NTKE 4QDFB 2E4PA 3GOBA 4U3FE 2I7FA 2A06E 4NBED 1KYOE 3N0QA 1L0LE 2XRXA 3FOUA 3GTSA 4EMJB 4HM1A 5BOKA 1L0NE 2NVGA 2E75D 1G8KB 3GZXA 1VM9A 4OGQD 4HM2A 4AIVA 2B24A 1NYKA 3CXHE 1WQLA 2D2CD 2XR8A 2ZYLA 5KKZC 2B1XA 1O7PA 3CX5E 1PP9E 4NBAD 1BCCE 1JM1A 1P84E 3VMGD 1O7MA 2NVEA 2CKFA 2HMOA 4QDDA 1VCKA 2HMJA 2BMRA 3GCEA 3GL2A 1BE3E 4H13D 2BMOA 4NB8D 4HM3A 3EQQA 2BCCE 4AAYB 4P1CH 1SQPE 3H1HE 4QURA 3GB4A 1O7NA 3H1IE 3VMHD 2YVJB 4NBGD 4HJLA 4HM8A 1VF5D 2NVFA 4HM0A 1EZVE 3GZYA 5KLIC 2YFIA 2GBXA 1EG9A 3L74E 4H44D 4QCKA 3GTEA 4NBFD 1SQXE 4PD4E 2HMKA 1ULIA 3CWBE 5AEUA 2IBZE 4HM7A 2XSOA 4NBCD 1NTZE 4PV1D 2YIUC 3AZCA 1Q90C 3L70E 2E74D 2E4QA 4NBBD 4QDFA 2YFLA 3D89A 1SQQE 1FQTA 3GL0A
chains in the Genus database with same CATH superfamily
2QPZA 5AEWA 2HMMA 1KB9E 3VCAA 2E76D 3BCCE 5KLVE 4H0LD 1SJGA 4HM6A 1SQBE 1O7GA 2XSHA 1RIEA 1UUWA 2HMLA 2NWFA 4QDCA 2DE7D 2BMQA 1NDOA 2NUKA 5HL4A 1O7HA 1RFSA 1UUVA 2GBWA 4NB9D 3GKEA 1O7WA 2Q3WA 2HMNA 3L72E 3C0DA 3H1JE 2QJYC 1ZRTE 3L73E 4HM5A 2NUMA 2JO6A 2QJKC 2QJPC 2FYUE 1ULJA 1NTME 1PPJE 4NBHD 3DQYA 2DE6D 3L75E 2ZT9D 3H1LE 1NU1E 2DE5D 1G8JB 3TGUE 4NBDD 3L71E 4P1BH 4HM4A 3EN1A 1SQVE 3VCPA 4QUQA 2JZAA 4HKVA 2YFJA 5CXMA 3VMID 4QUPA 3H1KE 2FYNC 1NTKE 4QDFB 2E4PA 3GOBA 4U3FE 2I7FA 2A06E 4NBED 1KYOE 3N0QA 1L0LE 2XRXA 3FOUA 3GTSA 4EMJB 4HM1A 5BOKA 1L0NE 2NVGA 2E75D 1G8KB 3GZXA 1VM9A 4OGQD 4HM2A 4AIVA 2B24A 1NYKA 3CXHE 1WQLA 2D2CD 2XR8A 2ZYLA 5KKZC 2B1XA 1O7PA 3CX5E 1PP9E 4NBAD 1BCCE 1JM1A 1P84E 3VMGD 1O7MA 2NVEA 2CKFA 2HMOA 4QDDA 1VCKA 2HMJA 2BMRA 3GCEA 3GL2A 1BE3E 4H13D 2BMOA 4NB8D 4HM3A 3EQQA 2BCCE 4AAYB 4P1CH 1SQPE 3H1HE 4QURA 3GB4A 1O7NA 3H1IE 3VMHD 2YVJB 4NBGD 4HJLA 4HM8A 1VF5D 2NVFA 4HM0A 1EZVE 3GZYA 5KLIC 2YFIA 2GBXA 1EG9A 3L74E 4H44D 4QCKA 3GTEA 4NBFD 1SQXE 4PD4E 2HMKA 1ULIA 3CWBE 5AEUA 2IBZE 4HM7A 2XSOA 4NBCD 1NTZE 4PV1D 2YIUC 3AZCA 1Q90C 3L70E 2E74D 2E4QA 4NBBD 4QDFA 2YFLA 3D89A 1SQQE 1FQTA 3GL0A
chains in the Genus database with same CATH topology
2QPZA 5AEWA 2HMMA 1KB9E 3VCAA 2E76D 3BCCE 5KLVE 4H0LD 1SJGA 4HM6A 1SQBE 1O7GA 2XSHA 1RIEA 1UUWA 2HMLA 2NWFA 4QDCA 2DE7D 2BMQA 1NDOA 2NUKA 5HL4A 1O7HA 1RFSA 1UUVA 2GBWA 4NB9D 3GKEA 1O7WA 2Q3WA 2HMNA 3L72E 3C0DA 3H1JE 2QJYC 1ZRTE 3L73E 4HM5A 2NUMA 2JO6A 2QJKC 2QJPC 2FYUE 1ULJA 1NTME 1PPJE 4NBHD 3DQYA 2DE6D 3L75E 2ZT9D 3H1LE 1NU1E 2DE5D 1G8JB 3TGUE 4NBDD 3L71E 4P1BH 4HM4A 3EN1A 1SQVE 3VCPA 4QUQA 2JZAA 4HKVA 2YFJA 5CXMA 3VMID 4QUPA 3H1KE 2FYNC 1NTKE 4QDFB 2E4PA 3GOBA 4U3FE 2I7FA 2A06E 4NBED 1KYOE 3N0QA 1L0LE 2XRXA 3FOUA 3GTSA 4EMJB 4HM1A 5BOKA 1L0NE 2NVGA 2E75D 1G8KB 3GZXA 1VM9A 4OGQD 4HM2A 4AIVA 2B24A 1NYKA 3CXHE 1WQLA 2D2CD 2XR8A 2ZYLA 5KKZC 2B1XA 1O7PA 3CX5E 1PP9E 4NBAD 1BCCE 1JM1A 1P84E 3VMGD 1O7MA 2NVEA 2CKFA 2HMOA 4QDDA 1VCKA 2HMJA 2BMRA 3GCEA 3GL2A 1BE3E 4H13D 2BMOA 4NB8D 4HM3A 3EQQA 2BCCE 4AAYB 4P1CH 1SQPE 3H1HE 4QURA 3GB4A 1O7NA 3H1IE 3VMHD 2YVJB 4NBGD 4HJLA 4HM8A 1VF5D 2NVFA 4HM0A 1EZVE 3GZYA 5KLIC 2YFIA 2GBXA 1EG9A 3L74E 4H44D 4QCKA 3GTEA 4NBFD 1SQXE 4PD4E 2HMKA 1ULIA 3CWBE 5AEUA 2IBZE 4HM7A 2XSOA 4NBCD 1NTZE 4PV1D 2YIUC 3AZCA 1Q90C 3L70E 2E74D 2E4QA 4NBBD 4QDFA 2YFLA 3D89A 1SQQE 1FQTA 3GL0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QPZ A;  5AEW A;  2HMM A;  1KB9 E;  3VCA A;  2E76 D;  3BCC E;  5KLV E;  4H0L D;  1SJG A;  4HM6 A;  1SQB E;  1O7G A;  2XSH A;  1RIE A;  1UUW A;  2HML A;  2NWF A;  4QDC A;  2DE7 D;  2BMQ A;  1NDO A;  2NUK A;  5HL4 A;  1O7H A;  1RFS A;  1UUV A;  2GBW A;  4NB9 D;  3GKE A;  1O7W A;  2Q3W A;  2HMN A;  3L72 E;  3C0D A;  3H1J E;  2QJY C;  1ZRT E;  3L73 E;  4HM5 A;  2NUM A;  2JO6 A;  2QJK C;  2QJP C;  2FYU E;  1ULJ A;  1NTM E;  1PPJ E;  4NBH D;  3DQY A;  2DE6 D;  3L75 E;  2ZT9 D;  3H1L E;  1NU1 E;  2DE5 D;  1G8J B;  3TGU E;  4NBD D;  3L71 E;  4P1B H;  4HM4 A;  3EN1 A;  1SQV E;  3VCP A;  4QUQ A;  2JZA A;  4HKV A;  2YFJ A;  5CXM A;  3VMI D;  4QUP A;  3H1K E;  2FYN C;  1NTK E;  4QDF B;  2E4P A;  3GOB A;  4U3F E;  2I7F A;  2A06 E;  4NBE D;  1KYO E;  3N0Q A;  1L0L E;  2XRX A;  3FOU A;  3GTS A;  4EMJ B;  4HM1 A;  5BOK A;  1L0N E;  2NVG A;  2E75 D;  1G8K B;  3GZX A;  1VM9 A;  4OGQ D;  4HM2 A;  4AIV A;  2B24 A;  1NYK A;  3CXH E;  1WQL A;  2D2C D;  2XR8 A;  2ZYL A;  5KKZ C;  2B1X A;  1O7P A;  3CX5 E;  1PP9 E;  4NBA D;  1BCC E;  1JM1 A;  1P84 E;  3VMG D;  1O7M A;  2NVE A;  2CKF A;  2HMO A;  4QDD A;  1VCK A;  2HMJ A;  2BMR A;  3GCE A;  3GL2 A;  1BE3 E;  4H13 D;  2BMO A;  4NB8 D;  4HM3 A;  3EQQ A;  2BCC E;  4AAY B;  4P1C H;  1SQP E;  3H1H E;  4QUR A;  3GB4 A;  1O7N A;  3H1I E;  3VMH D;  2YVJ B;  4NBG D;  4HJL A;  4HM8 A;  1VF5 D;  2NVF A;  4HM0 A;  1EZV E;  3GZY A;  5KLI C;  2YFI A;  2GBX A;  1EG9 A;  3L74 E;  4H44 D;  4QCK A;  3GTE A;  4NBF D;  1SQX E;  4PD4 E;  2HMK A;  1ULI A;  3CWB E;  5AEU A;  2IBZ E;  4HM7 A;  2XSO A;  4NBC D;  1NTZ E;  4PV1 D;  2YIU C;  3AZC A;  1Q90 C;  3L70 E;  2E74 D;  2E4Q A;  4NBB D;  4QDF A;  2YFL A;  3D89 A;  1SQQ E;  1FQT A;  3GL0 A; 
#chains in the Genus database with same CATH topology
 2QPZ A;  5AEW A;  2HMM A;  1KB9 E;  3VCA A;  2E76 D;  3BCC E;  5KLV E;  4H0L D;  1SJG A;  4HM6 A;  1SQB E;  1O7G A;  2XSH A;  1RIE A;  1UUW A;  2HML A;  2NWF A;  4QDC A;  2DE7 D;  2BMQ A;  1NDO A;  2NUK A;  5HL4 A;  1O7H A;  1RFS A;  1UUV A;  2GBW A;  4NB9 D;  3GKE A;  1O7W A;  2Q3W A;  2HMN A;  3L72 E;  3C0D A;  3H1J E;  2QJY C;  1ZRT E;  3L73 E;  4HM5 A;  2NUM A;  2JO6 A;  2QJK C;  2QJP C;  2FYU E;  1ULJ A;  1NTM E;  1PPJ E;  4NBH D;  3DQY A;  2DE6 D;  3L75 E;  2ZT9 D;  3H1L E;  1NU1 E;  2DE5 D;  1G8J B;  3TGU E;  4NBD D;  3L71 E;  4P1B H;  4HM4 A;  3EN1 A;  1SQV E;  3VCP A;  4QUQ A;  2JZA A;  4HKV A;  2YFJ A;  5CXM A;  3VMI D;  4QUP A;  3H1K E;  2FYN C;  1NTK E;  4QDF B;  2E4P A;  3GOB A;  4U3F E;  2I7F A;  2A06 E;  4NBE D;  1KYO E;  3N0Q A;  1L0L E;  2XRX A;  3FOU A;  3GTS A;  4EMJ B;  4HM1 A;  5BOK A;  1L0N E;  2NVG A;  2E75 D;  1G8K B;  3GZX A;  1VM9 A;  4OGQ D;  4HM2 A;  4AIV A;  2B24 A;  1NYK A;  3CXH E;  1WQL A;  2D2C D;  2XR8 A;  2ZYL A;  5KKZ C;  2B1X A;  1O7P A;  3CX5 E;  1PP9 E;  4NBA D;  1BCC E;  1JM1 A;  1P84 E;  3VMG D;  1O7M A;  2NVE A;  2CKF A;  2HMO A;  4QDD A;  1VCK A;  2HMJ A;  2BMR A;  3GCE A;  3GL2 A;  1BE3 E;  4H13 D;  2BMO A;  4NB8 D;  4HM3 A;  3EQQ A;  2BCC E;  4AAY B;  4P1C H;  1SQP E;  3H1H E;  4QUR A;  3GB4 A;  1O7N A;  3H1I E;  3VMH D;  2YVJ B;  4NBG D;  4HJL A;  4HM8 A;  1VF5 D;  2NVF A;  4HM0 A;  1EZV E;  3GZY A;  5KLI C;  2YFI A;  2GBX A;  1EG9 A;  3L74 E;  4H44 D;  4QCK A;  3GTE A;  4NBF D;  1SQX E;  4PD4 E;  2HMK A;  1ULI A;  3CWB E;  5AEU A;  2IBZ E;  4HM7 A;  2XSO A;  4NBC D;  1NTZ E;  4PV1 D;  2YIU C;  3AZC A;  1Q90 C;  3L70 E;  2E74 D;  2E4Q A;  4NBB D;  4QDF A;  2YFL A;  3D89 A;  1SQQ E;  1FQT A;  3GL0 A; 
#chains in the Genus database with same CATH homology
 2QPZ A;  5AEW A;  2HMM A;  1KB9 E;  3VCA A;  2E76 D;  3BCC E;  5KLV E;  4H0L D;  1SJG A;  4HM6 A;  1SQB E;  1O7G A;  2XSH A;  1RIE A;  1UUW A;  2HML A;  2NWF A;  4QDC A;  2DE7 D;  2BMQ A;  1NDO A;  2NUK A;  5HL4 A;  1O7H A;  1RFS A;  1UUV A;  2GBW A;  4NB9 D;  3GKE A;  1O7W A;  2Q3W A;  2HMN A;  3L72 E;  3C0D A;  3H1J E;  2QJY C;  1ZRT E;  3L73 E;  4HM5 A;  2NUM A;  2JO6 A;  2QJK C;  2QJP C;  2FYU E;  1ULJ A;  1NTM E;  1PPJ E;  4NBH D;  3DQY A;  2DE6 D;  3L75 E;  2ZT9 D;  3H1L E;  1NU1 E;  2DE5 D;  1G8J B;  3TGU E;  4NBD D;  3L71 E;  4P1B H;  4HM4 A;  3EN1 A;  1SQV E;  3VCP A;  4QUQ A;  2JZA A;  4HKV A;  2YFJ A;  5CXM A;  3VMI D;  4QUP A;  3H1K E;  2FYN C;  1NTK E;  4QDF B;  2E4P A;  3GOB A;  4U3F E;  2I7F A;  2A06 E;  4NBE D;  1KYO E;  3N0Q A;  1L0L E;  2XRX A;  3FOU A;  3GTS A;  4EMJ B;  4HM1 A;  5BOK A;  1L0N E;  2NVG A;  2E75 D;  1G8K B;  3GZX A;  1VM9 A;  4OGQ D;  4HM2 A;  4AIV A;  2B24 A;  1NYK A;  3CXH E;  1WQL A;  2D2C D;  2XR8 A;  2ZYL A;  5KKZ C;  2B1X A;  1O7P A;  3CX5 E;  1PP9 E;  4NBA D;  1BCC E;  1JM1 A;  1P84 E;  3VMG D;  1O7M A;  2NVE A;  2CKF A;  2HMO A;  4QDD A;  1VCK A;  2HMJ A;  2BMR A;  3GCE A;  3GL2 A;  1BE3 E;  4H13 D;  2BMO A;  4NB8 D;  4HM3 A;  3EQQ A;  2BCC E;  4AAY B;  4P1C H;  1SQP E;  3H1H E;  4QUR A;  3GB4 A;  1O7N A;  3H1I E;  3VMH D;  2YVJ B;  4NBG D;  4HJL A;  4HM8 A;  1VF5 D;  2NVF A;  4HM0 A;  1EZV E;  3GZY A;  5KLI C;  2YFI A;  2GBX A;  1EG9 A;  3L74 E;  4H44 D;  4QCK A;  3GTE A;  4NBF D;  1SQX E;  4PD4 E;  2HMK A;  1ULI A;  3CWB E;  5AEU A;  2IBZ E;  4HM7 A;  2XSO A;  4NBC D;  1NTZ E;  4PV1 D;  2YIU C;  3AZC A;  1Q90 C;  3L70 E;  2E74 D;  2E4Q A;  4NBB D;  4QDF A;  2YFL A;  3D89 A;  1SQQ E;  1FQT A;  3GL0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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