4NBFD

Oxygenase with gln282 replaced by asn and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
molecule keywords Terminal oxygenase component of carbazole
total genus 19
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbfD00
3CXHE 4P1CH 2HMKA 2E4PA 2HMNA 1KYOE 2DE6D 1ULJA 3GL2A 4QUQA 1VCKA 1NTKE 2YFJA 3GTEA 3L71E 4HM4A 3L70E 1PP9E 2NUMA 4H0LD 2E76D 1JM1A 1PPJE 2YVJB 1G8JB 2JZAA 3H1KE 4PD4E 1O7PA 2NVEA 3VCPA 1NDOA 3GOBA 5KLVE 4NBAD 1EZVE 1RIEA 1WQLA 3VMHD 4HM1A 1L0LE 2GBWA 3GZXA 3L72E 4QDFB 1L0NE 4HKVA 2GBXA 3L75E 3GZYA 4NBDD 3L73E 4EMJB 1SQXE 2E74D 1UUWA 2HMLA 2YIUC 1FQTA 3CWBE 2FYNC 2HMMA 1O7WA 2XSOA 1P84E 4NBGD 1G8KB 4QDDA 1O7NA 4H13D 2HMOA 4HM0A 4HM5A 4NBHD 3VCAA 4HM2A 2NVGA 4NB9D 3EN1A 2NWFA 3TGUE 5HL4A 1O7HA 4P1BH 2BCCE 1NYKA 3CX5E 2BMOA 2QJPC 1Q90C 3FOUA 1O7GA 2XR8A 1NU1E 3H1HE 4HM8A 2B1XA 2D2CD 3GL0A 1O7MA 2DE5D 2ZYLA 4PV1D 1BCCE 2CKFA 1SQVE 2I7FA 3VMID 4AIVA 1VF5D 4NBED 3N0QA 4HM7A 4NB8D 4NBFD 3L74E 1RFSA 2E75D 2HMJA 4QURA 4OGQD 3H1JE 2QJKC 5AEWA 4HM6A 4H44D 5KKZC 4HJLA 1SQPE 2XRXA 3DQYA 4U3FE 2IBZE 1BE3E 2B24A 3GKEA 2YFIA 3GCEA 1ZRTE 3H1IE 1UUVA 5AEUA 1KB9E 2BMRA 3AZCA 2FYUE 2QJYC 2XSHA 3H1LE 4NBCD 2YFLA 2E4QA 2ZT9D 3VMGD 3GTSA 5KLIC 4QCKA 2NVFA 4HM3A 4QDFA 5CXMA 1SQQE 1NTZE 2JO6A 3GB4A 4NBBD 1EG9A 2QPZA 3C0DA 1SJGA 1VM9A 3EQQA 4AAYB 1ULIA 2A06E 1NTME 3BCCE 1SQBE 3D89A 2DE7D 2Q3WA 2BMQA 4QDCA 4QUPA 2NUKA 5BOKA
chains in the Genus database with same CATH superfamily
3CXHE 4P1CH 2HMKA 2E4PA 2HMNA 1KYOE 2DE6D 1ULJA 3GL2A 4QUQA 1VCKA 1NTKE 2YFJA 3GTEA 3L71E 4HM4A 3L70E 1PP9E 2NUMA 4H0LD 2E76D 1JM1A 1PPJE 2YVJB 1G8JB 2JZAA 3H1KE 4PD4E 1O7PA 2NVEA 3VCPA 1NDOA 3GOBA 5KLVE 4NBAD 1EZVE 1RIEA 1WQLA 3VMHD 4HM1A 1L0LE 2GBWA 3GZXA 3L72E 4QDFB 1L0NE 4HKVA 2GBXA 3L75E 3GZYA 4NBDD 3L73E 4EMJB 1SQXE 2E74D 1UUWA 2HMLA 2YIUC 1FQTA 3CWBE 2FYNC 2HMMA 1O7WA 2XSOA 1P84E 4NBGD 1G8KB 4QDDA 1O7NA 4H13D 2HMOA 4HM0A 4HM5A 4NBHD 3VCAA 4HM2A 2NVGA 4NB9D 3EN1A 2NWFA 3TGUE 5HL4A 1O7HA 4P1BH 2BCCE 1NYKA 3CX5E 2BMOA 2QJPC 1Q90C 3FOUA 1O7GA 2XR8A 1NU1E 3H1HE 4HM8A 2B1XA 2D2CD 3GL0A 1O7MA 2DE5D 2ZYLA 4PV1D 1BCCE 2CKFA 1SQVE 2I7FA 3VMID 4AIVA 1VF5D 4NBED 3N0QA 4HM7A 4NB8D 4NBFD 3L74E 1RFSA 2E75D 2HMJA 4QURA 4OGQD 3H1JE 2QJKC 5AEWA 4HM6A 4H44D 5KKZC 4HJLA 1SQPE 2XRXA 3DQYA 4U3FE 2IBZE 1BE3E 2B24A 3GKEA 2YFIA 3GCEA 1ZRTE 3H1IE 1UUVA 5AEUA 1KB9E 2BMRA 3AZCA 2FYUE 2QJYC 2XSHA 3H1LE 4NBCD 2YFLA 2E4QA 2ZT9D 3VMGD 3GTSA 5KLIC 4QCKA 2NVFA 4HM3A 4QDFA 5CXMA 1SQQE 1NTZE 2JO6A 3GB4A 4NBBD 1EG9A 2QPZA 3C0DA 1SJGA 1VM9A 3EQQA 4AAYB 1ULIA 2A06E 1NTME 3BCCE 1SQBE 3D89A 2DE7D 2Q3WA 2BMQA 4QDCA 4QUPA 2NUKA 5BOKA
chains in the Genus database with same CATH topology
3CXHE 4P1CH 2HMKA 2E4PA 2HMNA 1KYOE 2DE6D 1ULJA 3GL2A 4QUQA 1VCKA 1NTKE 2YFJA 3GTEA 3L71E 4HM4A 3L70E 1PP9E 2NUMA 4H0LD 2E76D 1JM1A 1PPJE 2YVJB 1G8JB 2JZAA 3H1KE 4PD4E 1O7PA 2NVEA 3VCPA 1NDOA 3GOBA 5KLVE 4NBAD 1EZVE 1RIEA 1WQLA 3VMHD 4HM1A 1L0LE 2GBWA 3GZXA 3L72E 4QDFB 1L0NE 4HKVA 2GBXA 3L75E 3GZYA 4NBDD 3L73E 4EMJB 1SQXE 2E74D 1UUWA 2HMLA 2YIUC 1FQTA 3CWBE 2FYNC 2HMMA 1O7WA 2XSOA 1P84E 4NBGD 1G8KB 4QDDA 1O7NA 4H13D 2HMOA 4HM0A 4HM5A 4NBHD 3VCAA 4HM2A 2NVGA 4NB9D 3EN1A 2NWFA 3TGUE 5HL4A 1O7HA 4P1BH 2BCCE 1NYKA 3CX5E 2BMOA 2QJPC 1Q90C 3FOUA 1O7GA 2XR8A 1NU1E 3H1HE 4HM8A 2B1XA 2D2CD 3GL0A 1O7MA 2DE5D 2ZYLA 4PV1D 1BCCE 2CKFA 1SQVE 2I7FA 3VMID 4AIVA 1VF5D 4NBED 3N0QA 4HM7A 4NB8D 4NBFD 3L74E 1RFSA 2E75D 2HMJA 4QURA 4OGQD 3H1JE 2QJKC 5AEWA 4HM6A 4H44D 5KKZC 4HJLA 1SQPE 2XRXA 3DQYA 4U3FE 2IBZE 1BE3E 2B24A 3GKEA 2YFIA 3GCEA 1ZRTE 3H1IE 1UUVA 5AEUA 1KB9E 2BMRA 3AZCA 2FYUE 2QJYC 2XSHA 3H1LE 4NBCD 2YFLA 2E4QA 2ZT9D 3VMGD 3GTSA 5KLIC 4QCKA 2NVFA 4HM3A 4QDFA 5CXMA 1SQQE 1NTZE 2JO6A 3GB4A 4NBBD 1EG9A 2QPZA 3C0DA 1SJGA 1VM9A 3EQQA 4AAYB 1ULIA 2A06E 1NTME 3BCCE 1SQBE 3D89A 2DE7D 2Q3WA 2BMQA 4QDCA 4QUPA 2NUKA 5BOKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CXH E;  4P1C H;  2HMK A;  2E4P A;  2HMN A;  1KYO E;  2DE6 D;  1ULJ A;  3GL2 A;  4QUQ A;  1VCK A;  1NTK E;  2YFJ A;  3GTE A;  3L71 E;  4HM4 A;  3L70 E;  1PP9 E;  2NUM A;  4H0L D;  2E76 D;  1JM1 A;  1PPJ E;  2YVJ B;  1G8J B;  2JZA A;  3H1K E;  4PD4 E;  1O7P A;  2NVE A;  3VCP A;  1NDO A;  3GOB A;  5KLV E;  4NBA D;  1EZV E;  1RIE A;  1WQL A;  3VMH D;  4HM1 A;  1L0L E;  2GBW A;  3GZX A;  3L72 E;  4QDF B;  1L0N E;  4HKV A;  2GBX A;  3L75 E;  3GZY A;  4NBD D;  3L73 E;  4EMJ B;  1SQX E;  2E74 D;  1UUW A;  2HML A;  2YIU C;  1FQT A;  3CWB E;  2FYN C;  2HMM A;  1O7W A;  2XSO A;  1P84 E;  4NBG D;  1G8K B;  4QDD A;  1O7N A;  4H13 D;  2HMO A;  4HM0 A;  4HM5 A;  4NBH D;  3VCA A;  4HM2 A;  2NVG A;  4NB9 D;  3EN1 A;  2NWF A;  3TGU E;  5HL4 A;  1O7H A;  4P1B H;  2BCC E;  1NYK A;  3CX5 E;  2BMO A;  2QJP C;  1Q90 C;  3FOU A;  1O7G A;  2XR8 A;  1NU1 E;  3H1H E;  4HM8 A;  2B1X A;  2D2C D;  3GL0 A;  1O7M A;  2DE5 D;  2ZYL A;  4PV1 D;  1BCC E;  2CKF A;  1SQV E;  2I7F A;  3VMI D;  4AIV A;  1VF5 D;  4NBE D;  3N0Q A;  4HM7 A;  4NB8 D;  4NBF D;  3L74 E;  1RFS A;  2E75 D;  2HMJ A;  4QUR A;  4OGQ D;  3H1J E;  2QJK C;  5AEW A;  4HM6 A;  4H44 D;  5KKZ C;  4HJL A;  1SQP E;  2XRX A;  3DQY A;  4U3F E;  2IBZ E;  1BE3 E;  2B24 A;  3GKE A;  2YFI A;  3GCE A;  1ZRT E;  3H1I E;  1UUV A;  5AEU A;  1KB9 E;  2BMR A;  3AZC A;  2FYU E;  2QJY C;  2XSH A;  3H1L E;  4NBC D;  2YFL A;  2E4Q A;  2ZT9 D;  3VMG D;  3GTS A;  5KLI C;  4QCK A;  2NVF A;  4HM3 A;  4QDF A;  5CXM A;  1SQQ E;  1NTZ E;  2JO6 A;  3GB4 A;  4NBB D;  1EG9 A;  2QPZ A;  3C0D A;  1SJG A;  1VM9 A;  3EQQ A;  4AAY B;  1ULI A;  2A06 E;  1NTM E;  3BCC E;  1SQB E;  3D89 A;  2DE7 D;  2Q3W A;  2BMQ A;  4QDC A;  4QUP A;  2NUK A;  5BOK A; 
#chains in the Genus database with same CATH topology
 3CXH E;  4P1C H;  2HMK A;  2E4P A;  2HMN A;  1KYO E;  2DE6 D;  1ULJ A;  3GL2 A;  4QUQ A;  1VCK A;  1NTK E;  2YFJ A;  3GTE A;  3L71 E;  4HM4 A;  3L70 E;  1PP9 E;  2NUM A;  4H0L D;  2E76 D;  1JM1 A;  1PPJ E;  2YVJ B;  1G8J B;  2JZA A;  3H1K E;  4PD4 E;  1O7P A;  2NVE A;  3VCP A;  1NDO A;  3GOB A;  5KLV E;  4NBA D;  1EZV E;  1RIE A;  1WQL A;  3VMH D;  4HM1 A;  1L0L E;  2GBW A;  3GZX A;  3L72 E;  4QDF B;  1L0N E;  4HKV A;  2GBX A;  3L75 E;  3GZY A;  4NBD D;  3L73 E;  4EMJ B;  1SQX E;  2E74 D;  1UUW A;  2HML A;  2YIU C;  1FQT A;  3CWB E;  2FYN C;  2HMM A;  1O7W A;  2XSO A;  1P84 E;  4NBG D;  1G8K B;  4QDD A;  1O7N A;  4H13 D;  2HMO A;  4HM0 A;  4HM5 A;  4NBH D;  3VCA A;  4HM2 A;  2NVG A;  4NB9 D;  3EN1 A;  2NWF A;  3TGU E;  5HL4 A;  1O7H A;  4P1B H;  2BCC E;  1NYK A;  3CX5 E;  2BMO A;  2QJP C;  1Q90 C;  3FOU A;  1O7G A;  2XR8 A;  1NU1 E;  3H1H E;  4HM8 A;  2B1X A;  2D2C D;  3GL0 A;  1O7M A;  2DE5 D;  2ZYL A;  4PV1 D;  1BCC E;  2CKF A;  1SQV E;  2I7F A;  3VMI D;  4AIV A;  1VF5 D;  4NBE D;  3N0Q A;  4HM7 A;  4NB8 D;  4NBF D;  3L74 E;  1RFS A;  2E75 D;  2HMJ A;  4QUR A;  4OGQ D;  3H1J E;  2QJK C;  5AEW A;  4HM6 A;  4H44 D;  5KKZ C;  4HJL A;  1SQP E;  2XRX A;  3DQY A;  4U3F E;  2IBZ E;  1BE3 E;  2B24 A;  3GKE A;  2YFI A;  3GCE A;  1ZRT E;  3H1I E;  1UUV A;  5AEU A;  1KB9 E;  2BMR A;  3AZC A;  2FYU E;  2QJY C;  2XSH A;  3H1L E;  4NBC D;  2YFL A;  2E4Q A;  2ZT9 D;  3VMG D;  3GTS A;  5KLI C;  4QCK A;  2NVF A;  4HM3 A;  4QDF A;  5CXM A;  1SQQ E;  1NTZ E;  2JO6 A;  3GB4 A;  4NBB D;  1EG9 A;  2QPZ A;  3C0D A;  1SJG A;  1VM9 A;  3EQQ A;  4AAY B;  1ULI A;  2A06 E;  1NTM E;  3BCC E;  1SQB E;  3D89 A;  2DE7 D;  2Q3W A;  2BMQ A;  4QDC A;  4QUP A;  2NUK A;  5BOK A; 
#chains in the Genus database with same CATH homology
 3CXH E;  4P1C H;  2HMK A;  2E4P A;  2HMN A;  1KYO E;  2DE6 D;  1ULJ A;  3GL2 A;  4QUQ A;  1VCK A;  1NTK E;  2YFJ A;  3GTE A;  3L71 E;  4HM4 A;  3L70 E;  1PP9 E;  2NUM A;  4H0L D;  2E76 D;  1JM1 A;  1PPJ E;  2YVJ B;  1G8J B;  2JZA A;  3H1K E;  4PD4 E;  1O7P A;  2NVE A;  3VCP A;  1NDO A;  3GOB A;  5KLV E;  4NBA D;  1EZV E;  1RIE A;  1WQL A;  3VMH D;  4HM1 A;  1L0L E;  2GBW A;  3GZX A;  3L72 E;  4QDF B;  1L0N E;  4HKV A;  2GBX A;  3L75 E;  3GZY A;  4NBD D;  3L73 E;  4EMJ B;  1SQX E;  2E74 D;  1UUW A;  2HML A;  2YIU C;  1FQT A;  3CWB E;  2FYN C;  2HMM A;  1O7W A;  2XSO A;  1P84 E;  4NBG D;  1G8K B;  4QDD A;  1O7N A;  4H13 D;  2HMO A;  4HM0 A;  4HM5 A;  4NBH D;  3VCA A;  4HM2 A;  2NVG A;  4NB9 D;  3EN1 A;  2NWF A;  3TGU E;  5HL4 A;  1O7H A;  4P1B H;  2BCC E;  1NYK A;  3CX5 E;  2BMO A;  2QJP C;  1Q90 C;  3FOU A;  1O7G A;  2XR8 A;  1NU1 E;  3H1H E;  4HM8 A;  2B1X A;  2D2C D;  3GL0 A;  1O7M A;  2DE5 D;  2ZYL A;  4PV1 D;  1BCC E;  2CKF A;  1SQV E;  2I7F A;  3VMI D;  4AIV A;  1VF5 D;  4NBE D;  3N0Q A;  4HM7 A;  4NB8 D;  4NBF D;  3L74 E;  1RFS A;  2E75 D;  2HMJ A;  4QUR A;  4OGQ D;  3H1J E;  2QJK C;  5AEW A;  4HM6 A;  4H44 D;  5KKZ C;  4HJL A;  1SQP E;  2XRX A;  3DQY A;  4U3F E;  2IBZ E;  1BE3 E;  2B24 A;  3GKE A;  2YFI A;  3GCE A;  1ZRT E;  3H1I E;  1UUV A;  5AEU A;  1KB9 E;  2BMR A;  3AZC A;  2FYU E;  2QJY C;  2XSH A;  3H1L E;  4NBC D;  2YFL A;  2E4Q A;  2ZT9 D;  3VMG D;  3GTS A;  5KLI C;  4QCK A;  2NVF A;  4HM3 A;  4QDF A;  5CXM A;  1SQQ E;  1NTZ E;  2JO6 A;  3GB4 A;  4NBB D;  1EG9 A;  2QPZ A;  3C0D A;  1SJG A;  1VM9 A;  3EQQ A;  4AAY B;  1ULI A;  2A06 E;  1NTM E;  3BCC E;  1SQB E;  3D89 A;  2DE7 D;  2Q3W A;  2BMQ A;  4QDC A;  4QUP A;  2NUK A;  5BOK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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