4NHAA

Structure of human dicer platform-paz-connector helix cassette in complex with 16-mer sirna having 5'-p and uu-3' ends (3.4 angstrom resolution)
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
294
structure length
234
Chain Sequence
LYVIGMVLTTPLPDELRKLYPPEDTTRCFGILTAKPIPQIPVYTRSGEVTISIELKKSGFMLSLQMLELITRLHQYIFSHILRLSAYCVLPLNVTLDIDFKFMEDIEKSTKYTKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPKQILVPELCAIHPIPASLWRKAVCLPSILYRLHC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/rna
molecule keywords Endoribonuclease Dicer
publication title A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
pubmed doi rcsb
source organism Homo sapiens
total genus 43
structure length 234
sequence length 294
ec nomenclature ec 3.1.26.3: Ribonuclease III.
pdb deposition date 2013-11-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02170 PAZ PAZ domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.260.10 Mainly Beta Beta Complex paz domain paz domain 4nhaA02
4Z4FA 3O7XA 1VYNA 1T2RA 4Z4IA 4NGCA 2L5CA 3O3IX 4Z4EA 2FFLA 5KI6A 5JS1A 3MJ0A 4KRFA 1R6ZA 4W5TA 3O7VX 4Z4CA 4W5RA 1R4KA 3O6EX 3QIRA 4NH6A 5T7BA 4NGDA 4OLBA 5JS2A 4NGFA 2XFMA 4F3TA 4OLAA 4W5OA 2QVWA 4NGBA 4Z4GA 4NH5A 4W5QA 4NGGA 1SI3A 4KREA 1T2SA 1SI2A 4W5NA 2L5DA 4NHAA 4NH3A 4Z4HA
chains in the Genus database with same CATH superfamily
4Z4FA 3O7XA 1VYNA 1T2RA 4Z4IA 4NGCA 2L5CA 3O3IX 3DA5A 4Z4EA 2FFLA 5KI6A 3HM9A 5JS1A 4L1UA 1U04A 3MJ0A 4KRFA 1R6ZA 4W5TA 3HJFA 3O7VX 4Z4CA 4W5RA 1R4KA 3O6EX 3U1UA 3QIRA 1Z25A 5T7BA 4NH6A 4OLBA 4NGDA 4L1PA 5JS2A 4NGFA 3HVRA 3HK2A 2XFMA 3DLHA 2BZEA 4F3TA 4OLAA 4W5OA 2QVWA 4NGBA 4Z4GA 3HO1A 4NH5A 1Z26A 4W5QA 4NGGA 1SI3A 3DLBA 4KREA 2DB9A 1T2SA 1SI2A 4W5NA 3F73A 2L5DA 4NHAA 4NH3A 4Z4HA
chains in the Genus database with same CATH topology
4Z4FA 3O7XA 1VYNA 1T2RA 4Z4IA 4NGCA 2L5CA 3O3IX 3DA5A 4Z4EA 2FFLA 5KI6A 3HM9A 5JS1A 4L1UA 1U04A 3MJ0A 4KRFA 1R6ZA 4W5TA 3HJFA 3O7VX 4Z4CA 4W5RA 1R4KA 3O6EX 3U1UA 3QIRA 1Z25A 5T7BA 4NH6A 4OLBA 4NGDA 4L1PA 5JS2A 4NGFA 3HVRA 3HK2A 2XFMA 3DLHA 2BZEA 4F3TA 4OLAA 4W5OA 2QVWA 4NGBA 4Z4GA 3HO1A 4NH5A 1Z26A 4W5QA 4NGGA 1SI3A 3DLBA 4KREA 2DB9A 1T2SA 1SI2A 4W5NA 3F73A 2L5DA 4NHAA 4NH3A 4Z4HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Z4F A;  3O7X A;  1VYN A;  1T2R A;  4Z4I A;  4NGC A;  2L5C A;  3O3I X;  4Z4E A;  2FFL A;  5KI6 A;  5JS1 A;  3MJ0 A;  4KRF A;  1R6Z A;  4W5T A;  3O7V X;  4Z4C A;  4W5R A;  1R4K A;  3O6E X;  3QIR A;  4NH6 A;  5T7B A;  4NGD A;  4OLB A;  5JS2 A;  4NGF A;  2XFM A;  4F3T A;  4OLA A;  4W5O A;  2QVW A;  4NGB A;  4Z4G A;  4NH5 A;  4W5Q A;  4NGG A;  1SI3 A;  4KRE A;  1T2S A;  1SI2 A;  4W5N A;  2L5D A;  4NHA A;  4NH3 A;  4Z4H A; 
#chains in the Genus database with same CATH topology
 4Z4F A;  3O7X A;  1VYN A;  1T2R A;  4Z4I A;  4NGC A;  2L5C A;  3O3I X;  3DA5 A;  4Z4E A;  2FFL A;  5KI6 A;  3HM9 A;  5JS1 A;  4L1U A;  1U04 A;  3MJ0 A;  4KRF A;  1R6Z A;  4W5T A;  3HJF A;  3O7V X;  4Z4C A;  4W5R A;  1R4K A;  3O6E X;  3U1U A;  3QIR A;  1Z25 A;  5T7B A;  4NH6 A;  4OLB A;  4NGD A;  4L1P A;  5JS2 A;  4NGF A;  3HVR A;  3HK2 A;  2XFM A;  3DLH A;  2BZE A;  4F3T A;  4OLA A;  4W5O A;  2QVW A;  4NGB A;  4Z4G A;  3HO1 A;  4NH5 A;  1Z26 A;  4W5Q A;  4NGG A;  1SI3 A;  3DLB A;  4KRE A;  2DB9 A;  1T2S A;  1SI2 A;  4W5N A;  3F73 A;  2L5D A;  4NHA A;  4NH3 A;  4Z4H A; 
#chains in the Genus database with same CATH homology
 4Z4F A;  3O7X A;  1VYN A;  1T2R A;  4Z4I A;  4NGC A;  2L5C A;  3O3I X;  3DA5 A;  4Z4E A;  2FFL A;  5KI6 A;  3HM9 A;  5JS1 A;  4L1U A;  1U04 A;  3MJ0 A;  4KRF A;  1R6Z A;  4W5T A;  3HJF A;  3O7V X;  4Z4C A;  4W5R A;  1R4K A;  3O6E X;  3U1U A;  3QIR A;  1Z25 A;  5T7B A;  4NH6 A;  4OLB A;  4NGD A;  4L1P A;  5JS2 A;  4NGF A;  3HVR A;  3HK2 A;  2XFM A;  3DLH A;  2BZE A;  4F3T A;  4OLA A;  4W5O A;  2QVW A;  4NGB A;  4Z4G A;  3HO1 A;  4NH5 A;  1Z26 A;  4W5Q A;  4NGG A;  1SI3 A;  3DLB A;  4KRE A;  2DB9 A;  1T2S A;  1SI2 A;  4W5N A;  3F73 A;  2L5D A;  4NHA A;  4NH3 A;  4Z4H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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