4NWJA

Crystal structure of phosphopglycerate mutase from staphylococcus aureus in 3-phosphoglyceric acid bound form.
Total Genus 189
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
189
Knots found
sequence length
504
structure length
504
Chain Sequence
AKKPTALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQIEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKEGVEASYNEGLTDEFVVPFIVENQNDGVNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKEGVTLRETGRLGDLAPTLLDLLNVEQPEDMTGESLIKH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
publication title Complete catalytic cycle of cofactor-independent phosphoglycerate mutase involves a spring-loaded mechanism
pubmed doi rcsb
source organism Staphylococcus aureus subsp. aureus
total genus 189
structure length 504
sequence length 504
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date 2013-12-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4nwjA01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 4nwjA02
5LQQA 2VQRA 2W5RA 2W5QA 3BDFA 4NWXA 1EW8A 4KJDA 3UNYA 2X98A 1URAA 1P49A 3SZZA 4MY4A 4LRAA 4B56A 1ED9A 2XRGA 3IGYB 1Y7AA 4LR8A 3WAWA 3IDDA 3TWZA 1E33P 4LRDA 1N2LA 4ZGAA 4LRCA 1ANIA 3MK0A 3LXQA 1B8JA 2GA3A 1AJDA 3NVLA 4NWJA 4UPIA 4UPLA 5L0BA 5LRNA 3WAVA 1EQJA 3M8YA 1AJBA 1ALKA 3NKRA 5IJQA 1E1ZP 4GTYA 1KHLA 4GTWA 3DPCA 1FSUA 1KHKA 1ZEFA 1HJKA 3BDGB 4KM4A 5LIAA 2GSUA 1HQAA 4KAVA 1O99A 3UN2A 3BDHA 3E2DA 1AUKA 3WBHA 2QZUA 3A52A 1KH9A 1Y6VA 5INHA 3B5QA 1N2KA 5EGHA 2G9YA 4LQYA 4TN0A 1KH5A 3WAXA 1ALJA 5TJ3A 5IJSA 3ED4A 4UOOA 4KAYA 1EJJA 3WAYA 1SHNA 2IFYA 4LRFA 1O98A 1E3CP 5LRMA 1ED8A 1K7HA 2IUCB 4YR1A 4LREA 1ZEDA 2W5VA 2XR9A 2D1GA 3MK2A 4ZG7A 3UO0A 2W5SA 4UOPA 2RH6A 3T02A 4UORA 4LR9A 3DYCA 4ZG6A 3NKPA 5HRTA 5DLTA 1ELYA 1EI6A 4CXUA 3BDGA 1KHJA 4LR2A 2IUCA 3TX0A 4KJGA 5DLVA 3IGZB 4QAXA 4CXSA 3UN5A 4N7TA 3NKNA 3CMRA 4CYSA 1EW2A 1ZEBA 3M8WA 2GLQA 5GRRA 1KHNA 3NKOA 2W5WA 3Q3QA 1KH4A 4GTXA 2W5TA 1AJAA 3NKQA 5K4PA 1ALIA 1ELXA 4UPKA 3NKMA 2ZKTA 5L0KA 4GTZA 4LR7A 4CYRA 3T00A 1HDHA 2W5XA 4FDJA 1ALHA 5L0EA 4MIVA 3TG0A 3MK1A 3UN3A 3M8ZA 1E2SP 4CXKA 2GSOA 4ZG9A 5KXAA 4UPHA 2W8SA 3SZYA 5AJ9A 3M7VA 4LRBA 1SHQA 1AJCA 1EW9A 1KH7A 5DLWA 3KD8A 3T01A 3OT9A 5GOVA 2W8DA 4FDIA 5EGEA 1ELZA 2GSNA 1ANJA 5C66A 4MHXA 2ANHA 1URBA
chains in the Genus database with same CATH superfamily
5LQQA 2VQRA 2W5RA 2W5QA 3BDFA 4NWXA 1EW8A 4KJDA 3UNYA 2X98A 1URAA 1P49A 3SZZA 4MY4A 4LRAA 4B56A 1ED9A 2XRGA 3IGYB 1Y7AA 4LR8A 3WAWA 3IDDA 3TWZA 1E33P 4LRDA 1N2LA 4ZGAA 4LRCA 1ANIA 3MK0A 3LXQA 1B8JA 2GA3A 1AJDA 3NVLA 4NWJA 4UPIA 4UPLA 5L0BA 5LRNA 3WAVA 1EQJA 3M8YA 1AJBA 1ALKA 3NKRA 5IJQA 1E1ZP 4GTYA 1KHLA 4GTWA 3DPCA 1FSUA 1KHKA 1ZEFA 1HJKA 3BDGB 4KM4A 5LIAA 2GSUA 1HQAA 4KAVA 1O99A 3UN2A 3BDHA 3E2DA 1AUKA 3WBHA 2QZUA 3A52A 1KH9A 1Y6VA 5INHA 3B5QA 1N2KA 5EGHA 2G9YA 4LQYA 4TN0A 1KH5A 3WAXA 1ALJA 5TJ3A 5IJSA 3ED4A 4UOOA 4KAYA 1EJJA 3WAYA 1SHNA 2IFYA 4LRFA 1O98A 1E3CP 5LRMA 1ED8A 1K7HA 2IUCB 4YR1A 4LREA 1ZEDA 2W5VA 2XR9A 2D1GA 3MK2A 4ZG7A 3UO0A 2W5SA 4UOPA 2RH6A 3T02A 4UORA 4LR9A 3DYCA 4ZG6A 3NKPA 5HRTA 5DLTA 1ELYA 1EI6A 4CXUA 3BDGA 1KHJA 4LR2A 2IUCA 3TX0A 4KJGA 5DLVA 3IGZB 4QAXA 4CXSA 3UN5A 4N7TA 3NKNA 3CMRA 4CYSA 1EW2A 1ZEBA 3M8WA 2GLQA 5GRRA 1KHNA 3NKOA 2W5WA 3Q3QA 1KH4A 4GTXA 2W5TA 1AJAA 3NKQA 5K4PA 1ALIA 1ELXA 4UPKA 3NKMA 2ZKTA 5L0KA 4GTZA 4LR7A 4CYRA 3T00A 1HDHA 2W5XA 4FDJA 1ALHA 5L0EA 4MIVA 3TG0A 3MK1A 3UN3A 3M8ZA 1E2SP 4CXKA 2GSOA 4ZG9A 5KXAA 4UPHA 2W8SA 3SZYA 5AJ9A 3M7VA 4LRBA 1SHQA 1AJCA 1EW9A 1KH7A 5DLWA 3KD8A 3T01A 3OT9A 5GOVA 2W8DA 4FDIA 5EGEA 1ELZA 2GSNA 1ANJA 5C66A 4MHXA 2ANHA 1URBA
chains in the Genus database with same CATH topology
5LQQA 2VQRA 2W5RA 2W5QA 3BDFA 4NWXA 1EW8A 4KJDA 3UNYA 2X98A 1URAA 1P49A 3SZZA 4MY4A 4LRAA 4B56A 1ED9A 2XRGA 3IGYB 1Y7AA 4LR8A 3WAWA 3IDDA 3TWZA 1E33P 4LRDA 1N2LA 4ZGAA 4LRCA 1ANIA 3MK0A 3LXQA 1B8JA 2GA3A 1AJDA 3NVLA 4NWJA 4UPIA 4UPLA 5L0BA 5LRNA 3WAVA 1EQJA 3M8YA 1AJBA 1ALKA 3NKRA 5IJQA 1E1ZP 4GTYA 1KHLA 4GTWA 3DPCA 1FSUA 1KHKA 1ZEFA 1HJKA 3BDGB 4KM4A 5LIAA 2GSUA 1HQAA 4KAVA 1O99A 3UN2A 3BDHA 3E2DA 1AUKA 3WBHA 2QZUA 3A52A 1KH9A 1Y6VA 5INHA 3B5QA 1N2KA 5EGHA 2G9YA 4LQYA 4TN0A 1KH5A 3WAXA 1ALJA 5TJ3A 5IJSA 3ED4A 4UOOA 4KAYA 1EJJA 3WAYA 1SHNA 2IFYA 4LRFA 1O98A 1E3CP 5LRMA 1ED8A 1K7HA 2IUCB 4YR1A 4LREA 1ZEDA 2W5VA 2XR9A 2D1GA 3MK2A 4ZG7A 3UO0A 2W5SA 4UOPA 2RH6A 3T02A 4UORA 4LR9A 3DYCA 4ZG6A 3NKPA 5HRTA 5DLTA 1ELYA 1EI6A 4CXUA 3BDGA 1KHJA 4LR2A 2IUCA 3TX0A 4KJGA 5DLVA 3IGZB 4QAXA 4CXSA 3UN5A 4N7TA 3NKNA 3CMRA 4CYSA 1EW2A 1ZEBA 3M8WA 2GLQA 5GRRA 1KHNA 3NKOA 2W5WA 3Q3QA 1KH4A 4GTXA 2W5TA 1AJAA 3NKQA 5K4PA 1ALIA 1ELXA 4UPKA 3NKMA 2ZKTA 5L0KA 4GTZA 4LR7A 4CYRA 3T00A 1HDHA 2W5XA 4FDJA 1ALHA 5L0EA 4MIVA 3TG0A 3MK1A 3UN3A 3M8ZA 1E2SP 4CXKA 2GSOA 4ZG9A 5KXAA 4UPHA 2W8SA 3SZYA 5AJ9A 3M7VA 4LRBA 1SHQA 1AJCA 1EW9A 1KH7A 5DLWA 3KD8A 3T01A 3OT9A 5GOVA 2W8DA 4FDIA 5EGEA 1ELZA 2GSNA 1ANJA 5C66A 4MHXA 2ANHA 1URBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5LQQ A;  2VQR A;  2W5R A;  2W5Q A;  3BDF A;  4NWX A;  1EW8 A;  4KJD A;  3UNY A;  2X98 A;  1URA A;  1P49 A;  3SZZ A;  4MY4 A;  4LRA A;  4B56 A;  1ED9 A;  2XRG A;  3IGY B;  1Y7A A;  4LR8 A;  3WAW A;  3IDD A;  3TWZ A;  1E33 P;  4LRD A;  1N2L A;  4ZGA A;  4LRC A;  1ANI A;  3MK0 A;  3LXQ A;  1B8J A;  2GA3 A;  1AJD A;  3NVL A;  4NWJ A;  4UPI A;  4UPL A;  5L0B A;  5LRN A;  3WAV A;  1EQJ A;  3M8Y A;  1AJB A;  1ALK A;  3NKR A;  5IJQ A;  1E1Z P;  4GTY A;  1KHL A;  4GTW A;  3DPC A;  1FSU A;  1KHK A;  1ZEF A;  1HJK A;  3BDG B;  4KM4 A;  5LIA A;  2GSU A;  1HQA A;  4KAV A;  1O99 A;  3UN2 A;  3BDH A;  3E2D A;  1AUK A;  3WBH A;  2QZU A;  3A52 A;  1KH9 A;  1Y6V A;  5INH A;  3B5Q A;  1N2K A;  5EGH A;  2G9Y A;  4LQY A;  4TN0 A;  1KH5 A;  3WAX A;  1ALJ A;  5TJ3 A;  5IJS A;  3ED4 A;  4UOO A;  4KAY A;  1EJJ A;  3WAY A;  1SHN A;  2IFY A;  4LRF A;  1O98 A;  1E3C P;  5LRM A;  1ED8 A;  1K7H A;  2IUC B;  4YR1 A;  4LRE A;  1ZED A;  2W5V A;  2XR9 A;  2D1G A;  3MK2 A;  4ZG7 A;  3UO0 A;  2W5S A;  4UOP A;  2RH6 A;  3T02 A;  4UOR A;  4LR9 A;  3DYC A;  4ZG6 A;  3NKP A;  5HRT A;  5DLT A;  1ELY A;  1EI6 A;  4CXU A;  3BDG A;  1KHJ A;  4LR2 A;  2IUC A;  3TX0 A;  4KJG A;  5DLV A;  3IGZ B;  4QAX A;  4CXS A;  3UN5 A;  4N7T A;  3NKN A;  3CMR A;  4CYS A;  1EW2 A;  1ZEB A;  3M8W A;  2GLQ A;  5GRR A;  1KHN A;  3NKO A;  2W5W A;  3Q3Q A;  1KH4 A;  4GTX A;  2W5T A;  1AJA A;  3NKQ A;  5K4P A;  1ALI A;  1ELX A;  4UPK A;  3NKM A;  2ZKT A;  5L0K A;  4GTZ A;  4LR7 A;  4CYR A;  3T00 A;  1HDH A;  2W5X A;  4FDJ A;  1ALH A;  5L0E A;  4MIV A;  3TG0 A;  3MK1 A;  3UN3 A;  3M8Z A;  1E2S P;  4CXK A;  2GSO A;  4ZG9 A;  5KXA A;  4UPH A;  2W8S A;  3SZY A;  5AJ9 A;  3M7V A;  4LRB A;  1SHQ A;  1AJC A;  1EW9 A;  1KH7 A;  5DLW A;  3KD8 A;  3T01 A;  3OT9 A;  5GOV A;  2W8D A;  4FDI A;  5EGE A;  1ELZ A;  2GSN A;  1ANJ A;  5C66 A;  4MHX A;  2ANH A;  1URB A; 
#chains in the Genus database with same CATH topology
 5LQQ A;  2VQR A;  2W5R A;  2W5Q A;  3BDF A;  4NWX A;  1EW8 A;  4KJD A;  3UNY A;  2X98 A;  1URA A;  1P49 A;  3SZZ A;  4MY4 A;  4LRA A;  4B56 A;  1ED9 A;  2XRG A;  3IGY B;  1Y7A A;  4LR8 A;  3WAW A;  3IDD A;  3TWZ A;  1E33 P;  4LRD A;  1N2L A;  4ZGA A;  4LRC A;  1ANI A;  3MK0 A;  3LXQ A;  1B8J A;  2GA3 A;  1AJD A;  3NVL A;  4NWJ A;  4UPI A;  4UPL A;  5L0B A;  5LRN A;  3WAV A;  1EQJ A;  3M8Y A;  1AJB A;  1ALK A;  3NKR A;  5IJQ A;  1E1Z P;  4GTY A;  1KHL A;  4GTW A;  3DPC A;  1FSU A;  1KHK A;  1ZEF A;  1HJK A;  3BDG B;  4KM4 A;  5LIA A;  2GSU A;  1HQA A;  4KAV A;  1O99 A;  3UN2 A;  3BDH A;  3E2D A;  1AUK A;  3WBH A;  2QZU A;  3A52 A;  1KH9 A;  1Y6V A;  5INH A;  3B5Q A;  1N2K A;  5EGH A;  2G9Y A;  4LQY A;  4TN0 A;  1KH5 A;  3WAX A;  1ALJ A;  5TJ3 A;  5IJS A;  3ED4 A;  4UOO A;  4KAY A;  1EJJ A;  3WAY A;  1SHN A;  2IFY A;  4LRF A;  1O98 A;  1E3C P;  5LRM A;  1ED8 A;  1K7H A;  2IUC B;  4YR1 A;  4LRE A;  1ZED A;  2W5V A;  2XR9 A;  2D1G A;  3MK2 A;  4ZG7 A;  3UO0 A;  2W5S A;  4UOP A;  2RH6 A;  3T02 A;  4UOR A;  4LR9 A;  3DYC A;  4ZG6 A;  3NKP A;  5HRT A;  5DLT A;  1ELY A;  1EI6 A;  4CXU A;  3BDG A;  1KHJ A;  4LR2 A;  2IUC A;  3TX0 A;  4KJG A;  5DLV A;  3IGZ B;  4QAX A;  4CXS A;  3UN5 A;  4N7T A;  3NKN A;  3CMR A;  4CYS A;  1EW2 A;  1ZEB A;  3M8W A;  2GLQ A;  5GRR A;  1KHN A;  3NKO A;  2W5W A;  3Q3Q A;  1KH4 A;  4GTX A;  2W5T A;  1AJA A;  3NKQ A;  5K4P A;  1ALI A;  1ELX A;  4UPK A;  3NKM A;  2ZKT A;  5L0K A;  4GTZ A;  4LR7 A;  4CYR A;  3T00 A;  1HDH A;  2W5X A;  4FDJ A;  1ALH A;  5L0E A;  4MIV A;  3TG0 A;  3MK1 A;  3UN3 A;  3M8Z A;  1E2S P;  4CXK A;  2GSO A;  4ZG9 A;  5KXA A;  4UPH A;  2W8S A;  3SZY A;  5AJ9 A;  3M7V A;  4LRB A;  1SHQ A;  1AJC A;  1EW9 A;  1KH7 A;  5DLW A;  3KD8 A;  3T01 A;  3OT9 A;  5GOV A;  2W8D A;  4FDI A;  5EGE A;  1ELZ A;  2GSN A;  1ANJ A;  5C66 A;  4MHX A;  2ANH A;  1URB A; 
#chains in the Genus database with same CATH homology
 5LQQ A;  2VQR A;  2W5R A;  2W5Q A;  3BDF A;  4NWX A;  1EW8 A;  4KJD A;  3UNY A;  2X98 A;  1URA A;  1P49 A;  3SZZ A;  4MY4 A;  4LRA A;  4B56 A;  1ED9 A;  2XRG A;  3IGY B;  1Y7A A;  4LR8 A;  3WAW A;  3IDD A;  3TWZ A;  1E33 P;  4LRD A;  1N2L A;  4ZGA A;  4LRC A;  1ANI A;  3MK0 A;  3LXQ A;  1B8J A;  2GA3 A;  1AJD A;  3NVL A;  4NWJ A;  4UPI A;  4UPL A;  5L0B A;  5LRN A;  3WAV A;  1EQJ A;  3M8Y A;  1AJB A;  1ALK A;  3NKR A;  5IJQ A;  1E1Z P;  4GTY A;  1KHL A;  4GTW A;  3DPC A;  1FSU A;  1KHK A;  1ZEF A;  1HJK A;  3BDG B;  4KM4 A;  5LIA A;  2GSU A;  1HQA A;  4KAV A;  1O99 A;  3UN2 A;  3BDH A;  3E2D A;  1AUK A;  3WBH A;  2QZU A;  3A52 A;  1KH9 A;  1Y6V A;  5INH A;  3B5Q A;  1N2K A;  5EGH A;  2G9Y A;  4LQY A;  4TN0 A;  1KH5 A;  3WAX A;  1ALJ A;  5TJ3 A;  5IJS A;  3ED4 A;  4UOO A;  4KAY A;  1EJJ A;  3WAY A;  1SHN A;  2IFY A;  4LRF A;  1O98 A;  1E3C P;  5LRM A;  1ED8 A;  1K7H A;  2IUC B;  4YR1 A;  4LRE A;  1ZED A;  2W5V A;  2XR9 A;  2D1G A;  3MK2 A;  4ZG7 A;  3UO0 A;  2W5S A;  4UOP A;  2RH6 A;  3T02 A;  4UOR A;  4LR9 A;  3DYC A;  4ZG6 A;  3NKP A;  5HRT A;  5DLT A;  1ELY A;  1EI6 A;  4CXU A;  3BDG A;  1KHJ A;  4LR2 A;  2IUC A;  3TX0 A;  4KJG A;  5DLV A;  3IGZ B;  4QAX A;  4CXS A;  3UN5 A;  4N7T A;  3NKN A;  3CMR A;  4CYS A;  1EW2 A;  1ZEB A;  3M8W A;  2GLQ A;  5GRR A;  1KHN A;  3NKO A;  2W5W A;  3Q3Q A;  1KH4 A;  4GTX A;  2W5T A;  1AJA A;  3NKQ A;  5K4P A;  1ALI A;  1ELX A;  4UPK A;  3NKM A;  2ZKT A;  5L0K A;  4GTZ A;  4LR7 A;  4CYR A;  3T00 A;  1HDH A;  2W5X A;  4FDJ A;  1ALH A;  5L0E A;  4MIV A;  3TG0 A;  3MK1 A;  3UN3 A;  3M8Z A;  1E2S P;  4CXK A;  2GSO A;  4ZG9 A;  5KXA A;  4UPH A;  2W8S A;  3SZY A;  5AJ9 A;  3M7V A;  4LRB A;  1SHQ A;  1AJC A;  1EW9 A;  1KH7 A;  5DLW A;  3KD8 A;  3T01 A;  3OT9 A;  5GOV A;  2W8D A;  4FDI A;  5EGE A;  1ELZ A;  2GSN A;  1ANJ A;  5C66 A;  4MHX A;  2ANH A;  1URB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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