4OEIA

Crystal structure of plant lectin from cicer arietinum at 2.6 angstrom resolution
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
224
structure length
224
Chain Sequence
GYINAAFRSSRNNEAYLFINDKYVLLDYAPGTSNDKVLYGPSFVRDGYKSLAKTIFGTYGIDCSFDTEYNEAFIFYENFCARIDYAPHSDKDKIISGPKKIADMFPFFKGTVFENGIDAAFRSTKGKEVYLFKGDKYARIDYLTNRLVQNIKSISDGFPCLRGTIFEAGMDSAFASHKTNEAYLFKGEYYARINFTPGSTNDIMGGVKKTLDYWPSLRGIIPLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords Lectin
publication title Crystal structure of plant lectin from Cicer arietinum at 2.6 angstrom resolution
rcsb
total genus 50
structure length 224
sequence length 224
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-01-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00045 Hemopexin Hemopexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.110.10.10 Mainly Beta 4 Propeller Hemopexin Hemopexin-like domain 4oeiA00
1CK7A 1RTGA 4RT6B 1QJSA 4FVLA 3LP9A 1SU3A 1HXNA 3BA0A 4FU4A 1ITVA 1QHUA 4HSDA 3S18A 4LL2A 4AUOA 2MQSA 1GXDA 2JXYA 1GENA 4YEHA 2CLTA 3V6NA 3C7XA 4OEIA 1PEXA 1FBLA 3OYOA 4G0DA
chains in the Genus database with same CATH superfamily
1CK7A 1RTGA 4RT6B 1QJSA 4FVLA 3LP9A 1SU3A 1HXNA 3BA0A 4FU4A 1ITVA 1QHUA 4HSDA 3S18A 4LL2A 4AUOA 2MQSA 1GXDA 2JXYA 1GENA 4YEHA 2CLTA 3V6NA 3C7XA 4OEIA 1PEXA 1FBLA 3OYOA 4G0DA
chains in the Genus database with same CATH topology
1CK7A 1RTGA 4RT6B 1QJSA 4FVLA 3LP9A 1SU3A 1HXNA 3BA0A 4FU4A 1ITVA 1QHUA 4HSDA 3S18A 4LL2A 4AUOA 2MQSA 1GXDA 2JXYA 1GENA 4YEHA 2CLTA 3V6NA 3C7XA 4OEIA 1PEXA 1FBLA 3OYOA 4G0DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CK7 A;  1RTG A;  4RT6 B;  1QJS A;  4FVL A;  3LP9 A;  1SU3 A;  1HXN A;  3BA0 A;  4FU4 A;  1ITV A;  1QHU A;  4HSD A;  3S18 A;  4LL2 A;  4AUO A;  2MQS A;  1GXD A;  2JXY A;  1GEN A;  4YEH A;  2CLT A;  3V6N A;  3C7X A;  4OEI A;  1PEX A;  1FBL A;  3OYO A;  4G0D A; 
#chains in the Genus database with same CATH topology
 1CK7 A;  1RTG A;  4RT6 B;  1QJS A;  4FVL A;  3LP9 A;  1SU3 A;  1HXN A;  3BA0 A;  4FU4 A;  1ITV A;  1QHU A;  4HSD A;  3S18 A;  4LL2 A;  4AUO A;  2MQS A;  1GXD A;  2JXY A;  1GEN A;  4YEH A;  2CLT A;  3V6N A;  3C7X A;  4OEI A;  1PEX A;  1FBL A;  3OYO A;  4G0D A; 
#chains in the Genus database with same CATH homology
 1CK7 A;  1RTG A;  4RT6 B;  1QJS A;  4FVL A;  3LP9 A;  1SU3 A;  1HXN A;  3BA0 A;  4FU4 A;  1ITV A;  1QHU A;  4HSD A;  3S18 A;  4LL2 A;  4AUO A;  2MQS A;  1GXD A;  2JXY A;  1GEN A;  4YEH A;  2CLT A;  3V6N A;  3C7X A;  4OEI A;  1PEX A;  1FBL A;  3OYO A;  4G0D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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