4OM4A

Crystal structure of ctx a2 from taiwan cobra (naja naja atra)
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
60
structure length
60
Chain Sequence
LKCNKLVPLFYKTCPAGKNLCYKMFMVSNLTVPVKRGCIDVCPKNSALVKYVCCNTDRCN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Cytotoxin 2
publication title Endocytotic Routes of Cobra Cardiotoxins Depend on Spatial Distribution of Positively Charged and Hydrophobic Domains to Target Distinct Types of Sulfated Glycoconjugates on Cell Surface.
pubmed doi rcsb
total genus 11
structure length 60
sequence length 60
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2014-01-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 4om4A00
1IDHA 3U73U 1LSIA 1V6PA 2QJAC 1JGKA 2BHIA 2J8BA 1VB0A 1LXGA 1W6BA 1IKCA 4UY2C 1NYSA 1RGJA 1IDIA 1CTXA 2BTXA 4DO8A 2CCXA 1IQ9A 1L4WA 2H62D 1KC4A 1NEAA 1M9ZA 1KBAA 2HLRA 1HC9B 2JQPA 4OM5A 1TFSA 2VLWA 1KL8A 1KBTA 1KXIA 2LA1A 4EY8B 2PJYC 1RL5A 1CDQA 1HAJA 1FFJA 4AEAA 1IDGA 3BT1U 1LX5B 1KBSA 1ZADA 1ONJA 2H64C 3PLCA 1KU6B 2H5FA 4HQPF 3FEVA 4LFTA 1CHVS 2ABXA 1CVOA 1NYUA 1CXNA 2CTXA 2L03A 1BXPA 4BDTB 2QJBC 2H62C 3KFDE 2H8UA 3U74U 4P7UA 1LXHA 3HH7A 1G6MA 4XJJA 3NH7A 1MAHF 3QB4B 3VTSA 2ERAA 2H7ZA 1CRFA 1FSCA 1TGXA 1IK8A 2X8BB 1CXOA 1QKDA 2LCRA 1NORA 1NXBA 1S4YA 1CDTA 1FRAA 2CRSA 6EBXA 2CRTA 2FD6U 2UWRA 3EBXA 3KFDI 1ES7B 1CDRA 4FAOE 1HAAA 1KTZB 2MHYA 1TXAA 4BIKB 2PJYB 1FF4A 2GOOC 2MUPA 1IJCA 1HOYA 2N99A 1JE9A 2JVEA 1F94A 1HC9A 2HLQA 1B41B 1IDLA 2MJYA 5DO6A 1DRSA 1ABTA 1YWHA 1ERAA 3ERAA 1KFHA 1REWC 1CDSA 2L5SA 4OM4A 1NTNA 4ZQYA 1UG4A 2UX2A 5IMTD 4RUDA 1NTXA 3NDSA 1JBDA 2I9BE 2MFAA 4FAOC 4QTIU 1QKEA 1COEA 1XT3A 1FSSB 1CODA 2MJ4A 2OFSA 5IMYC 1LJZA 3LAQU 1CCQA 1QM7A 2MJ0A 1ERGA 1H0JA 3BT2U 1KS6A 5DU1A 3NEQA 2H64B 1PLOA 4IYEA 2QJ9C 1CREA 2CDXA 2K3GA 2NBTA 1FASA 1TXBA 5EBXA 1MR6A 1CB9A 2GOOB 1BTEA 2MUOA 1I02A 1F8UB 2H7ZB 2QC1A 5DZ5A 3EVSC
chains in the Genus database with same CATH superfamily
1IDHA 3U73U 1LSIA 1V6PA 2QJAC 1JGKA 2BHIA 2J8BA 1VB0A 1LXGA 1W6BA 1IKCA 4UY2C 1NYSA 1RGJA 1IDIA 1CTXA 2BTXA 4DO8A 2CCXA 1IQ9A 1L4WA 2H62D 1KC4A 1NEAA 1M9ZA 1KBAA 2HLRA 1HC9B 2JQPA 4OM5A 1TFSA 2VLWA 1KL8A 1KBTA 1KXIA 2LA1A 4EY8B 2PJYC 1RL5A 1CDQA 1HAJA 1FFJA 4AEAA 1IDGA 3BT1U 1LX5B 1KBSA 1ZADA 1ONJA 2H64C 3PLCA 1KU6B 2H5FA 4HQPF 3FEVA 4LFTA 1CHVS 2ABXA 1CVOA 1NYUA 1CXNA 2CTXA 2L03A 1BXPA 4BDTB 2QJBC 2H62C 3KFDE 2H8UA 3U74U 4P7UA 1LXHA 3HH7A 1G6MA 4XJJA 3NH7A 1MAHF 3QB4B 3VTSA 2ERAA 2H7ZA 1CRFA 1FSCA 1TGXA 1IK8A 2X8BB 1CXOA 1QKDA 2LCRA 1NORA 1NXBA 1S4YA 1CDTA 1FRAA 2CRSA 6EBXA 2CRTA 2FD6U 2UWRA 3EBXA 3KFDI 1ES7B 1CDRA 4FAOE 1HAAA 1KTZB 2MHYA 1TXAA 4BIKB 2PJYB 1FF4A 2GOOC 2MUPA 1IJCA 1HOYA 2N99A 1JE9A 2JVEA 1F94A 1HC9A 2HLQA 1B41B 1IDLA 2MJYA 5DO6A 1DRSA 1ABTA 1YWHA 1ERAA 3ERAA 1KFHA 1REWC 1CDSA 2L5SA 4OM4A 1NTNA 4ZQYA 1UG4A 2UX2A 5IMTD 4RUDA 1NTXA 3NDSA 1JBDA 2I9BE 2MFAA 4FAOC 4QTIU 1QKEA 1COEA 1XT3A 1FSSB 1CODA 2MJ4A 2OFSA 5IMYC 4KSNA 1LJZA 3LAQU 1CCQA 1QM7A 2MJ0A 1ERGA 1H0JA 3BT2U 1KS6A 5DU1A 3NEQA 2H64B 1PLOA 4IYEA 2QJ9C 1CREA 2CDXA 2K3GA 2NBTA 1FASA 1TXBA 5EBXA 1MR6A 1CB9A 2GOOB 1BTEA 2MUOA 1I02A 1F8UB 2H7ZB 2QC1A 5DZ5A 3EVSC
chains in the Genus database with same CATH topology
1IDHA 3U73U 1LSIA 1V6PA 2QJAC 1JGKA 2BHIA 2J8BA 1VB0A 1LXGA 1W6BA 1IKCA 4UY2C 1NYSA 1RGJA 1IDIA 1CTXA 2BTXA 4DO8A 2CCXA 1IQ9A 1L4WA 2H62D 1KC4A 1NEAA 1M9ZA 1KBAA 2HLRA 1HC9B 2JQPA 4OM5A 1TFSA 2VLWA 1KL8A 1KBTA 1KXIA 2LA1A 4EY8B 2PJYC 1RL5A 1CDQA 1HAJA 1FFJA 4AEAA 1IDGA 3BT1U 1LX5B 1KBSA 1ZADA 1ONJA 2H64C 3PLCA 1KU6B 2H5FA 4HQPF 3FEVA 4LFTA 1CHVS 2ABXA 1CVOA 1NYUA 1CXNA 2CTXA 2L03A 1BXPA 4BDTB 2QJBC 2H62C 3KFDE 2H8UA 3U74U 4P7UA 1LXHA 3HH7A 1G6MA 4XJJA 3NH7A 1MAHF 3QB4B 3VTSA 2ERAA 2H7ZA 1CRFA 1FSCA 1TGXA 1IK8A 2X8BB 1CXOA 1QKDA 2LCRA 1NORA 1NXBA 1S4YA 1CDTA 1FRAA 2CRSA 6EBXA 2CRTA 2FD6U 2UWRA 3EBXA 3KFDI 1ES7B 1CDRA 4FAOE 1HAAA 1KTZB 2MHYA 1TXAA 4BIKB 2PJYB 1FF4A 2GOOC 2MUPA 1IJCA 1HOYA 2N99A 1JE9A 2JVEA 1F94A 1HC9A 2HLQA 1B41B 1IDLA 2MJYA 5DO6A 1DRSA 1ABTA 1YWHA 1ERAA 3ERAA 1KFHA 1REWC 1CDSA 2L5SA 4OM4A 1NTNA 4ZQYA 1UG4A 2UX2A 5IMTD 4RUDA 1NTXA 3NDSA 1JBDA 2I9BE 2MFAA 4FAOC 4QTIU 1QKEA 1COEA 1XT3A 1FSSB 1CODA 2MJ4A 2OFSA 5IMYC 4KSNA 1LJZA 3LAQU 1CCQA 1QM7A 2MJ0A 1ERGA 1H0JA 3BT2U 1KS6A 5DU1A 3NEQA 2H64B 1PLOA 4IYEA 2QJ9C 1CREA 2CDXA 2K3GA 2NBTA 1FASA 1TXBA 5EBXA 1MR6A 1CB9A 2GOOB 1BTEA 2MUOA 1I02A 1F8UB 2H7ZB 2QC1A 5DZ5A 3EVSC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IDH A;  3U73 U;  1LSI A;  1V6P A;  2QJA C;  1JGK A;  2BHI A;  2J8B A;  1VB0 A;  1LXG A;  1W6B A;  1IKC A;  4UY2 C;  1NYS A;  1RGJ A;  1IDI A;  1CTX A;  2BTX A;  4DO8 A;  2CCX A;  1IQ9 A;  1L4W A;  2H62 D;  1KC4 A;  1NEA A;  1M9Z A;  1KBA A;  2HLR A;  1HC9 B;  2JQP A;  4OM5 A;  1TFS A;  2VLW A;  1KL8 A;  1KBT A;  1KXI A;  2LA1 A;  4EY8 B;  2PJY C;  1RL5 A;  1CDQ A;  1HAJ A;  1FFJ A;  4AEA A;  1IDG A;  3BT1 U;  1LX5 B;  1KBS A;  1ZAD A;  1ONJ A;  2H64 C;  3PLC A;  1KU6 B;  2H5F A;  4HQP F;  3FEV A;  4LFT A;  1CHV S;  2ABX A;  1CVO A;  1NYU A;  1CXN A;  2CTX A;  2L03 A;  1BXP A;  4BDT B;  2QJB C;  2H62 C;  3KFD E;  2H8U A;  3U74 U;  4P7U A;  1LXH A;  3HH7 A;  1G6M A;  4XJJ A;  3NH7 A;  1MAH F;  3QB4 B;  3VTS A;  2ERA A;  2H7Z A;  1CRF A;  1FSC A;  1TGX A;  1IK8 A;  2X8B B;  1CXO A;  1QKD A;  2LCR A;  1NOR A;  1NXB A;  1S4Y A;  1CDT A;  1FRA A;  2CRS A;  6EBX A;  2CRT A;  2FD6 U;  2UWR A;  3EBX A;  3KFD I;  1ES7 B;  1CDR A;  4FAO E;  1HAA A;  1KTZ B;  2MHY A;  1TXA A;  4BIK B;  2PJY B;  1FF4 A;  2GOO C;  2MUP A;  1IJC A;  1HOY A;  2N99 A;  1JE9 A;  2JVE A;  1F94 A;  1HC9 A;  2HLQ A;  1B41 B;  1IDL A;  2MJY A;  5DO6 A;  1DRS A;  1ABT A;  1YWH A;  1ERA A;  3ERA A;  1KFH A;  1REW C;  1CDS A;  2L5S A;  4OM4 A;  1NTN A;  4ZQY A;  1UG4 A;  2UX2 A;  5IMT D;  4RUD A;  1NTX A;  3NDS A;  1JBD A;  2I9B E;  2MFA A;  4FAO C;  4QTI U;  1QKE A;  1COE A;  1XT3 A;  1FSS B;  1COD A;  2MJ4 A;  2OFS A;  5IMY C;  1LJZ A;  3LAQ U;  1CCQ A;  1QM7 A;  2MJ0 A;  1ERG A;  1H0J A;  3BT2 U;  1KS6 A;  5DU1 A;  3NEQ A;  2H64 B;  1PLO A;  4IYE A;  2QJ9 C;  1CRE A;  2CDX A;  2K3G A;  2NBT A;  1FAS A;  1TXB A;  5EBX A;  1MR6 A;  1CB9 A;  2GOO B;  1BTE A;  2MUO A;  1I02 A;  1F8U B;  2H7Z B;  2QC1 A;  5DZ5 A;  3EVS C; 
#chains in the Genus database with same CATH topology
 1IDH A;  3U73 U;  1LSI A;  1V6P A;  2QJA C;  1JGK A;  2BHI A;  2J8B A;  1VB0 A;  1LXG A;  1W6B A;  1IKC A;  4UY2 C;  1NYS A;  1RGJ A;  1IDI A;  1CTX A;  2BTX A;  4DO8 A;  2CCX A;  1IQ9 A;  1L4W A;  2H62 D;  1KC4 A;  1NEA A;  1M9Z A;  1KBA A;  2HLR A;  1HC9 B;  2JQP A;  4OM5 A;  1TFS A;  2VLW A;  1KL8 A;  1KBT A;  1KXI A;  2LA1 A;  4EY8 B;  2PJY C;  1RL5 A;  1CDQ A;  1HAJ A;  1FFJ A;  4AEA A;  1IDG A;  3BT1 U;  1LX5 B;  1KBS A;  1ZAD A;  1ONJ A;  2H64 C;  3PLC A;  1KU6 B;  2H5F A;  4HQP F;  3FEV A;  4LFT A;  1CHV S;  2ABX A;  1CVO A;  1NYU A;  1CXN A;  2CTX A;  2L03 A;  1BXP A;  4BDT B;  2QJB C;  2H62 C;  3KFD E;  2H8U A;  3U74 U;  4P7U A;  1LXH A;  3HH7 A;  1G6M A;  4XJJ A;  3NH7 A;  1MAH F;  3QB4 B;  3VTS A;  2ERA A;  2H7Z A;  1CRF A;  1FSC A;  1TGX A;  1IK8 A;  2X8B B;  1CXO A;  1QKD A;  2LCR A;  1NOR A;  1NXB A;  1S4Y A;  1CDT A;  1FRA A;  2CRS A;  6EBX A;  2CRT A;  2FD6 U;  2UWR A;  3EBX A;  3KFD I;  1ES7 B;  1CDR A;  4FAO E;  1HAA A;  1KTZ B;  2MHY A;  1TXA A;  4BIK B;  2PJY B;  1FF4 A;  2GOO C;  2MUP A;  1IJC A;  1HOY A;  2N99 A;  1JE9 A;  2JVE A;  1F94 A;  1HC9 A;  2HLQ A;  1B41 B;  1IDL A;  2MJY A;  5DO6 A;  1DRS A;  1ABT A;  1YWH A;  1ERA A;  3ERA A;  1KFH A;  1REW C;  1CDS A;  2L5S A;  4OM4 A;  1NTN A;  4ZQY A;  1UG4 A;  2UX2 A;  5IMT D;  4RUD A;  1NTX A;  3NDS A;  1JBD A;  2I9B E;  2MFA A;  4FAO C;  4QTI U;  1QKE A;  1COE A;  1XT3 A;  1FSS B;  1COD A;  2MJ4 A;  2OFS A;  5IMY C;  4KSN A;  1LJZ A;  3LAQ U;  1CCQ A;  1QM7 A;  2MJ0 A;  1ERG A;  1H0J A;  3BT2 U;  1KS6 A;  5DU1 A;  3NEQ A;  2H64 B;  1PLO A;  4IYE A;  2QJ9 C;  1CRE A;  2CDX A;  2K3G A;  2NBT A;  1FAS A;  1TXB A;  5EBX A;  1MR6 A;  1CB9 A;  2GOO B;  1BTE A;  2MUO A;  1I02 A;  1F8U B;  2H7Z B;  2QC1 A;  5DZ5 A;  3EVS C; 
#chains in the Genus database with same CATH homology
 1IDH A;  3U73 U;  1LSI A;  1V6P A;  2QJA C;  1JGK A;  2BHI A;  2J8B A;  1VB0 A;  1LXG A;  1W6B A;  1IKC A;  4UY2 C;  1NYS A;  1RGJ A;  1IDI A;  1CTX A;  2BTX A;  4DO8 A;  2CCX A;  1IQ9 A;  1L4W A;  2H62 D;  1KC4 A;  1NEA A;  1M9Z A;  1KBA A;  2HLR A;  1HC9 B;  2JQP A;  4OM5 A;  1TFS A;  2VLW A;  1KL8 A;  1KBT A;  1KXI A;  2LA1 A;  4EY8 B;  2PJY C;  1RL5 A;  1CDQ A;  1HAJ A;  1FFJ A;  4AEA A;  1IDG A;  3BT1 U;  1LX5 B;  1KBS A;  1ZAD A;  1ONJ A;  2H64 C;  3PLC A;  1KU6 B;  2H5F A;  4HQP F;  3FEV A;  4LFT A;  1CHV S;  2ABX A;  1CVO A;  1NYU A;  1CXN A;  2CTX A;  2L03 A;  1BXP A;  4BDT B;  2QJB C;  2H62 C;  3KFD E;  2H8U A;  3U74 U;  4P7U A;  1LXH A;  3HH7 A;  1G6M A;  4XJJ A;  3NH7 A;  1MAH F;  3QB4 B;  3VTS A;  2ERA A;  2H7Z A;  1CRF A;  1FSC A;  1TGX A;  1IK8 A;  2X8B B;  1CXO A;  1QKD A;  2LCR A;  1NOR A;  1NXB A;  1S4Y A;  1CDT A;  1FRA A;  2CRS A;  6EBX A;  2CRT A;  2FD6 U;  2UWR A;  3EBX A;  3KFD I;  1ES7 B;  1CDR A;  4FAO E;  1HAA A;  1KTZ B;  2MHY A;  1TXA A;  4BIK B;  2PJY B;  1FF4 A;  2GOO C;  2MUP A;  1IJC A;  1HOY A;  2N99 A;  1JE9 A;  2JVE A;  1F94 A;  1HC9 A;  2HLQ A;  1B41 B;  1IDL A;  2MJY A;  5DO6 A;  1DRS A;  1ABT A;  1YWH A;  1ERA A;  3ERA A;  1KFH A;  1REW C;  1CDS A;  2L5S A;  4OM4 A;  1NTN A;  4ZQY A;  1UG4 A;  2UX2 A;  5IMT D;  4RUD A;  1NTX A;  3NDS A;  1JBD A;  2I9B E;  2MFA A;  4FAO C;  4QTI U;  1QKE A;  1COE A;  1XT3 A;  1FSS B;  1COD A;  2MJ4 A;  2OFS A;  5IMY C;  4KSN A;  1LJZ A;  3LAQ U;  1CCQ A;  1QM7 A;  2MJ0 A;  1ERG A;  1H0J A;  3BT2 U;  1KS6 A;  5DU1 A;  3NEQ A;  2H64 B;  1PLO A;  4IYE A;  2QJ9 C;  1CRE A;  2CDX A;  2K3G A;  2NBT A;  1FAS A;  1TXB A;  5EBX A;  1MR6 A;  1CB9 A;  2GOO B;  1BTE A;  2MUO A;  1I02 A;  1F8U B;  2H7Z B;  2QC1 A;  5DZ5 A;  3EVS C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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