4OQCA

Urate oxidase co-crystallized with azide
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
295
structure length
295
Chain Sequence
SAVKAARYGKDNVRVYKVHKDEKTGVQTVYEMTVCVLLEGEIETSYTKADNSVIVATDSIKNTIYITAKQNPVTPPELFGSILGTHFIEKYNHIHAAHVNIVCHRWTRMDIDGKPHPHSFIRDSEEKRNVQVDVVEGKGIDIKSSLSGLTVLKSTNSQFWGFLRDEYTTLKETWDRILSTDVDATWQWKNFSGLQEVRSHVPKFDATWATAREVTLKTFAEDNSASVQATMYKMAEQILARQQLIETVEYSLPNKHYFEIDLSWHKGLQNTGKNAEVFAPQSDPNGLIKCTVGRS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxygen binding
molecule keywords Uricase
publication title Azide inhibition of urate oxidase.
pubmed doi rcsb
source organism Aspergillus flavus
total genus 79
structure length 295
sequence length 295
ec nomenclature ec 1.7.3.3: Factor independent urate hydroxylase.
pdb deposition date 2014-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01014 Uricase Uricase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.270.10 Alpha Beta Roll Urate Oxidase Urate Oxidase; 4oqcA00
4PUVA 3PLJA 1R56A 4D12A 3BK8A 3OBPA 3CKUA 1XXJA 5LL1A 3WLVA 4N9VA 3CKSA 3PKGA 4PR8A 1R51A 2ZKBA 3L8WA 2R5RA 4R99A 4D19A 4D13A 2ZKAA 2PESA 1XT4A 3PKUA 4FSKA 5M98A 5FRCA 4OQCA 2YZEA 2YZDA 3LBGA 4D17A 3PKSA 3PLGA 3PLHA 4N3MA 1WS3A 4CW6A 4CW2A 4XFPA 4N9MA 2IC0A 5AYJA 1XY3A 3P9FA 4POEA 5K9GA 4CW3A 3PKLA 2YZCA 1J2GA 3PJKA 2ICQA 3F2MA 4N9SA 1WS2A 3P9OA 4OP6A 3PK4A 1VAYA 1WRRA 1VAXA 1R4SA 3LD4A 3PK6A 2IBAA 3D2OA 4OP9A 3PKFA 3PKHA 2YZBA 4R8XA 3PK5A 3PLIA 3PK8A 3PKKA 2FUBA 3BJPA 4MB8A 3PK3A 3GKOA 3L9GA 3PKTA 3PLEA 1R4UA 4CW0A 5K95A 3PLMA 2FXLA
chains in the Genus database with same CATH superfamily
4PUVA 3PLJA 1R56A 4D12A 3BK8A 3OBPA 3CKUA 1XXJA 5LL1A 3WLVA 4N9VA 3CKSA 3PKGA 4PR8A 1R51A 2ZKBA 3L8WA 2R5RA 4R99A 4D19A 4D13A 2ZKAA 2PESA 1XT4A 3PKUA 4FSKA 5M98A 5FRCA 4OQCA 2YZEA 2YZDA 3LBGA 4D17A 3PKSA 3PLGA 3PLHA 4N3MA 1WS3A 4CW6A 4CW2A 4XFPA 4N9MA 2IC0A 5AYJA 1XY3A 3P9FA 4POEA 5K9GA 4CW3A 3PKLA 2YZCA 1J2GA 3PJKA 2ICQA 3F2MA 4N9SA 1WS2A 3P9OA 4OP6A 3PK4A 1VAYA 1WRRA 1VAXA 1R4SA 3LD4A 3PK6A 2IBAA 3D2OA 4OP9A 3PKFA 3PKHA 2YZBA 4R8XA 3PK5A 3PLIA 3PK8A 3PKKA 2FUBA 3BJPA 4MB8A 3PK3A 3GKOA 3L9GA 3PKTA 3PLEA 1R4UA 4CW0A 5K95A 3PLMA 2FXLA
chains in the Genus database with same CATH topology
4PUVA 3PLJA 1R56A 4D12A 3BK8A 3OBPA 3CKUA 1XXJA 5LL1A 3WLVA 4N9VA 3CKSA 3PKGA 4PR8A 1R51A 2ZKBA 3L8WA 2R5RA 4R99A 4D19A 4D13A 2ZKAA 2PESA 1XT4A 3PKUA 4FSKA 5M98A 5FRCA 4OQCA 2YZEA 2YZDA 3LBGA 4D17A 3PKSA 3PLGA 3PLHA 4N3MA 1WS3A 4CW6A 4CW2A 4XFPA 4N9MA 2IC0A 5AYJA 1XY3A 3P9FA 4POEA 5K9GA 4CW3A 3PKLA 2YZCA 1J2GA 3PJKA 2ICQA 3F2MA 4N9SA 1WS2A 3P9OA 4OP6A 3PK4A 1VAYA 1WRRA 1VAXA 1R4SA 3LD4A 3PK6A 2IBAA 3D2OA 4OP9A 3PKFA 3PKHA 2YZBA 4R8XA 3PK5A 3PLIA 3PK8A 3PKKA 2FUBA 3BJPA 4MB8A 3PK3A 3GKOA 3L9GA 3PKTA 3PLEA 1R4UA 4CW0A 5K95A 3PLMA 2FXLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PUV A;  3PLJ A;  1R56 A;  4D12 A;  3BK8 A;  3OBP A;  3CKU A;  1XXJ A;  5LL1 A;  3WLV A;  4N9V A;  3CKS A;  3PKG A;  4PR8 A;  1R51 A;  2ZKB A;  3L8W A;  2R5R A;  4R99 A;  4D19 A;  4D13 A;  2ZKA A;  2PES A;  1XT4 A;  3PKU A;  4FSK A;  5M98 A;  5FRC A;  4OQC A;  2YZE A;  2YZD A;  3LBG A;  4D17 A;  3PKS A;  3PLG A;  3PLH A;  4N3M A;  1WS3 A;  4CW6 A;  4CW2 A;  4XFP A;  4N9M A;  2IC0 A;  5AYJ A;  1XY3 A;  3P9F A;  4POE A;  5K9G A;  4CW3 A;  3PKL A;  2YZC A;  1J2G A;  3PJK A;  2ICQ A;  3F2M A;  4N9S A;  1WS2 A;  3P9O A;  4OP6 A;  3PK4 A;  1VAY A;  1WRR A;  1VAX A;  1R4S A;  3LD4 A;  3PK6 A;  2IBA A;  3D2O A;  4OP9 A;  3PKF A;  3PKH A;  2YZB A;  4R8X A;  3PK5 A;  3PLI A;  3PK8 A;  3PKK A;  2FUB A;  3BJP A;  4MB8 A;  3PK3 A;  3GKO A;  3L9G A;  3PKT A;  3PLE A;  1R4U A;  4CW0 A;  5K95 A;  3PLM A;  2FXL A; 
#chains in the Genus database with same CATH topology
 4PUV A;  3PLJ A;  1R56 A;  4D12 A;  3BK8 A;  3OBP A;  3CKU A;  1XXJ A;  5LL1 A;  3WLV A;  4N9V A;  3CKS A;  3PKG A;  4PR8 A;  1R51 A;  2ZKB A;  3L8W A;  2R5R A;  4R99 A;  4D19 A;  4D13 A;  2ZKA A;  2PES A;  1XT4 A;  3PKU A;  4FSK A;  5M98 A;  5FRC A;  4OQC A;  2YZE A;  2YZD A;  3LBG A;  4D17 A;  3PKS A;  3PLG A;  3PLH A;  4N3M A;  1WS3 A;  4CW6 A;  4CW2 A;  4XFP A;  4N9M A;  2IC0 A;  5AYJ A;  1XY3 A;  3P9F A;  4POE A;  5K9G A;  4CW3 A;  3PKL A;  2YZC A;  1J2G A;  3PJK A;  2ICQ A;  3F2M A;  4N9S A;  1WS2 A;  3P9O A;  4OP6 A;  3PK4 A;  1VAY A;  1WRR A;  1VAX A;  1R4S A;  3LD4 A;  3PK6 A;  2IBA A;  3D2O A;  4OP9 A;  3PKF A;  3PKH A;  2YZB A;  4R8X A;  3PK5 A;  3PLI A;  3PK8 A;  3PKK A;  2FUB A;  3BJP A;  4MB8 A;  3PK3 A;  3GKO A;  3L9G A;  3PKT A;  3PLE A;  1R4U A;  4CW0 A;  5K95 A;  3PLM A;  2FXL A; 
#chains in the Genus database with same CATH homology
 4PUV A;  3PLJ A;  1R56 A;  4D12 A;  3BK8 A;  3OBP A;  3CKU A;  1XXJ A;  5LL1 A;  3WLV A;  4N9V A;  3CKS A;  3PKG A;  4PR8 A;  1R51 A;  2ZKB A;  3L8W A;  2R5R A;  4R99 A;  4D19 A;  4D13 A;  2ZKA A;  2PES A;  1XT4 A;  3PKU A;  4FSK A;  5M98 A;  5FRC A;  4OQC A;  2YZE A;  2YZD A;  3LBG A;  4D17 A;  3PKS A;  3PLG A;  3PLH A;  4N3M A;  1WS3 A;  4CW6 A;  4CW2 A;  4XFP A;  4N9M A;  2IC0 A;  5AYJ A;  1XY3 A;  3P9F A;  4POE A;  5K9G A;  4CW3 A;  3PKL A;  2YZC A;  1J2G A;  3PJK A;  2ICQ A;  3F2M A;  4N9S A;  1WS2 A;  3P9O A;  4OP6 A;  3PK4 A;  1VAY A;  1WRR A;  1VAX A;  1R4S A;  3LD4 A;  3PK6 A;  2IBA A;  3D2O A;  4OP9 A;  3PKF A;  3PKH A;  2YZB A;  4R8X A;  3PK5 A;  3PLI A;  3PK8 A;  3PKK A;  2FUB A;  3BJP A;  4MB8 A;  3PK3 A;  3GKO A;  3L9G A;  3PKT A;  3PLE A;  1R4U A;  4CW0 A;  5K95 A;  3PLM A;  2FXL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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