4PIKA

Crystal structure of banana lectin bound to dimannose
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
140
structure length
140
Chain Sequence
AIKVGAWGGNGGSAFDMGPAYRIISVKIFSGDVVDGVDVTFTYYGKTETRHYGGSGGTPHEIVLQEGEYLVGMAGEVANYHGAVVLGKLGFSTNKKAYGPFGNTGGTPFSLPIAAGKISGFFGRGGKFLDAIGVYLEPLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords Ripening-associated protein
publication title Engineering a Therapeutic Lectin by Uncoupling Mitogenicity from Antiviral Activity.
pubmed doi rcsb
source organism Musa acuminata
total genus 24
structure length 140
sequence length 140
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2014-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 4pikA00
3LL2A 3LLZA 5J51A 4AK4A 1TP8A 2BN0A 3LL1A 4MQ0A 1UGYA 5J4TA 1JOTA 1WS4C 3WOBA 2GTYA 1J4TA 1KU8A 2GUCA 3VY6A 1ZGSA 4PIFA 1X1VA 4R6PA 1XXRA 5AV7A 3R50A 4PIUA 3LL0A 4R6OA 1UH1A 4WOGA 3O44A 4R6NA 4AKBA 3LKYA 1C3KA 1WS5C 3VY7A 3APAA 1WS4A 1VBPA 1PXDA 3R51A 4PIKA 3MITA 2NU5A 1UGWC 1ZGRA 1XEZA 2GUDA 4AKDA 1M26A 4R6RA 3MIVA 1OUWA 2GUXA 3LLYA 5BN6E 5J50A 1J4SA 3WOCA 1UGXA 4R6QA 4DDNA 2NUOA 1WS5A 2BMYA 3VZEA 3VZGA 5JM1A 1VBOA 3P8SA 1UGYC 4PITA 2HYQA 1TOQA 3MIUA 1UGWA 3AQGA 3LM1A 1J4UA 3R52A 5J4XA 3VZFA 2HYRA 1JACA 2GUEA 2BMZA 1UH0A 4GX7A 1C3MA 1KUJA 1XXQA 1C3NA 5EXGA 4AKCA 2JZ4A
chains in the Genus database with same CATH superfamily
1DLCA 3LL2A 3LLZA 5J51A 4AK4A 1TP8A 2BN0A 3LL1A 4MQ0A 1UGYA 5J4TA 1JOTA 3TOWA 1WS4C 3WOBA 2GTYA 1CIYA 1J4TA 3EB7A 2QP2A 4MOAA 1KU8A 2GUCA 3VY6A 1ZGSA 4PIFA 1X1VA 4R6PA 1XXRA 4QX0A 5AV7A 3R50A 4PIUA 3LL0A 4R6OA 1UH1A 4WOGA 3O44A 4R6NA 4ARXA 1I5PA 4AKBA 3LKYA 1C3KA 1WS5C 4W8JA 3VY7A 3APAA 1WS4A 1VBPA 1PXDA 3R51A 4PIKA 3MITA 1W99A 2NU5A 1UGWC 1ZGRA 1XEZA 2GUDA 4AKDA 1M26A 2C9KA 4R6RA 3MIVA 1OUWA 2GUXA 3LLYA 5BN6E 4QX2A 5J50A 1J4SA 3WOCA 1UGXA 4R6QA 4DDNA 1JI6A 2NUOA 1WS5A 2BMYA 3VZEA 3VZGA 5JM1A 1VBOA 3P8SA 4QX3A 4ARYA 1UGYC 4PITA 2HYQA 1TOQA 3MIUA 1UGWA 3AQGA 3LM1A 1J4UA 3R52A 5J4XA 3VZFA 2HYRA 1JACA 2GUEA 2BMZA 1UH0A 4GX7A 1C3MA 4QX1A 4D8MA 1KUJA 1XXQA 1C3NA 5EXGA 4AKCA 1VMOA 2JZ4A
chains in the Genus database with same CATH topology
3LL2A 3LLZA 5J51A 4AK4A 1TP8A 2BN0A 3LL1A 4MQ0A 1UGYA 5J4TA 1JOTA 1WS4C 3WOBA 2GTYA 1J4TA 1KU8A 2GUCA 3VY6A 1ZGSA 4PIFA 1X1VA 4R6PA 1XXRA 5AV7A 3R50A 4PIUA 3LL0A 4R6OA 1UH1A 4WOGA 3O44A 4R6NA 4AKBA 3LKYA 1C3KA 1WS5C 3VY7A 3APAA 1WS4A 1VBPA 1PXDA 3R51A 4PIKA 3MITA 2NU5A 1UGWC 1ZGRA 1XEZA 2GUDA 4AKDA 1M26A 4R6RA 3MIVA 1OUWA 2GUXA 3LLYA 5BN6E 5J50A 1J4SA 3WOCA 1UGXA 4R6QA 4DDNA 2NUOA 1WS5A 2BMYA 3VZEA 3VZGA 5JM1A 1VBOA 3P8SA 1UGYC 4PITA 2HYQA 1TOQA 3MIUA 1UGWA 3AQGA 3LM1A 1J4UA 3R52A 5J4XA 3VZFA 2HYRA 1JACA 2GUEA 2BMZA 1UH0A 4GX7A 1C3MA 1KUJA 1XXQA 1C3NA 5EXGA 4AKCA 2JZ4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LL2 A;  3LLZ A;  5J51 A;  4AK4 A;  1TP8 A;  2BN0 A;  3LL1 A;  4MQ0 A;  1UGY A;  5J4T A;  1JOT A;  1WS4 C;  3WOB A;  2GTY A;  1J4T A;  1KU8 A;  2GUC A;  3VY6 A;  1ZGS A;  4PIF A;  1X1V A;  4R6P A;  1XXR A;  5AV7 A;  3R50 A;  4PIU A;  3LL0 A;  4R6O A;  1UH1 A;  4WOG A;  3O44 A;  4R6N A;  4AKB A;  3LKY A;  1C3K A;  1WS5 C;  3VY7 A;  3APA A;  1WS4 A;  1VBP A;  1PXD A;  3R51 A;  4PIK A;  3MIT A;  2NU5 A;  1UGW C;  1ZGR A;  1XEZ A;  2GUD A;  4AKD A;  1M26 A;  4R6R A;  3MIV A;  1OUW A;  2GUX A;  3LLY A;  5BN6 E;  5J50 A;  1J4S A;  3WOC A;  1UGX A;  4R6Q A;  4DDN A;  2NUO A;  1WS5 A;  2BMY A;  3VZE A;  3VZG A;  5JM1 A;  1VBO A;  3P8S A;  1UGY C;  4PIT A;  2HYQ A;  1TOQ A;  3MIU A;  1UGW A;  3AQG A;  3LM1 A;  1J4U A;  3R52 A;  5J4X A;  3VZF A;  2HYR A;  1JAC A;  2GUE A;  2BMZ A;  1UH0 A;  4GX7 A;  1C3M A;  1KUJ A;  1XXQ A;  1C3N A;  5EXG A;  4AKC A;  2JZ4 A; 
#chains in the Genus database with same CATH topology
 1DLC A;  3LL2 A;  3LLZ A;  5J51 A;  4AK4 A;  1TP8 A;  2BN0 A;  3LL1 A;  4MQ0 A;  1UGY A;  5J4T A;  1JOT A;  3TOW A;  1WS4 C;  3WOB A;  2GTY A;  1CIY A;  1J4T A;  3EB7 A;  2QP2 A;  4MOA A;  1KU8 A;  2GUC A;  3VY6 A;  1ZGS A;  4PIF A;  1X1V A;  4R6P A;  1XXR A;  4QX0 A;  5AV7 A;  3R50 A;  4PIU A;  3LL0 A;  4R6O A;  1UH1 A;  4WOG A;  3O44 A;  4R6N A;  4ARX A;  1I5P A;  4AKB A;  3LKY A;  1C3K A;  1WS5 C;  4W8J A;  3VY7 A;  3APA A;  1WS4 A;  1VBP A;  1PXD A;  3R51 A;  4PIK A;  3MIT A;  1W99 A;  2NU5 A;  1UGW C;  1ZGR A;  1XEZ A;  2GUD A;  4AKD A;  1M26 A;  2C9K A;  4R6R A;  3MIV A;  1OUW A;  2GUX A;  3LLY A;  5BN6 E;  4QX2 A;  5J50 A;  1J4S A;  3WOC A;  1UGX A;  4R6Q A;  4DDN A;  1JI6 A;  2NUO A;  1WS5 A;  2BMY A;  3VZE A;  3VZG A;  5JM1 A;  1VBO A;  3P8S A;  4QX3 A;  4ARY A;  1UGY C;  4PIT A;  2HYQ A;  1TOQ A;  3MIU A;  1UGW A;  3AQG A;  3LM1 A;  1J4U A;  3R52 A;  5J4X A;  3VZF A;  2HYR A;  1JAC A;  2GUE A;  2BMZ A;  1UH0 A;  4GX7 A;  1C3M A;  4QX1 A;  4D8M A;  1KUJ A;  1XXQ A;  1C3N A;  5EXG A;  4AKC A;  1VMO A;  2JZ4 A; 
#chains in the Genus database with same CATH homology
 3LL2 A;  3LLZ A;  5J51 A;  4AK4 A;  1TP8 A;  2BN0 A;  3LL1 A;  4MQ0 A;  1UGY A;  5J4T A;  1JOT A;  1WS4 C;  3WOB A;  2GTY A;  1J4T A;  1KU8 A;  2GUC A;  3VY6 A;  1ZGS A;  4PIF A;  1X1V A;  4R6P A;  1XXR A;  5AV7 A;  3R50 A;  4PIU A;  3LL0 A;  4R6O A;  1UH1 A;  4WOG A;  3O44 A;  4R6N A;  4AKB A;  3LKY A;  1C3K A;  1WS5 C;  3VY7 A;  3APA A;  1WS4 A;  1VBP A;  1PXD A;  3R51 A;  4PIK A;  3MIT A;  2NU5 A;  1UGW C;  1ZGR A;  1XEZ A;  2GUD A;  4AKD A;  1M26 A;  4R6R A;  3MIV A;  1OUW A;  2GUX A;  3LLY A;  5BN6 E;  5J50 A;  1J4S A;  3WOC A;  1UGX A;  4R6Q A;  4DDN A;  2NUO A;  1WS5 A;  2BMY A;  3VZE A;  3VZG A;  5JM1 A;  1VBO A;  3P8S A;  1UGY C;  4PIT A;  2HYQ A;  1TOQ A;  3MIU A;  1UGW A;  3AQG A;  3LM1 A;  1J4U A;  3R52 A;  5J4X A;  3VZF A;  2HYR A;  1JAC A;  2GUE A;  2BMZ A;  1UH0 A;  4GX7 A;  1C3M A;  1KUJ A;  1XXQ A;  1C3N A;  5EXG A;  4AKC A;  2JZ4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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