4PUVA

Urate oxidase di-azide complex
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
295
structure length
295
Chain Sequence
SAVKAARYGKDNVRVYKVHKDEKTGVQTVYEMTVCVLLEGEIETSYTKADNSVIVATDSIKNTIYITAKQNPVTPPELFGSILGTHFIEKYNHIHAAHVNIVCHRWTRMDIDGKPHPHSFIRDSEEKRNVQVDVVEGKGIDIKSSLSGLTVLKSTNSQFWGFLRDEYTTLKETWDRILSTDVDATWQWKNFSGLQEVRSHVPKFDATWATAREVTLKTFAEDNSASVQATMYKMAEQILARQQLIETVEYSLPNKHYFEIDLSWHKGLQNTGKNAEVFAPQSDPNGLIKCTVGRS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxygen binding
molecule keywords Uricase
publication title Azide inhibition of urate oxidase.
pubmed doi rcsb
source organism Aspergillus flavus
total genus 77
structure length 295
sequence length 295
ec nomenclature ec 1.7.3.3: Factor independent urate hydroxylase.
pdb deposition date 2014-03-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01014 Uricase Uricase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.270.10 Alpha Beta Roll Urate Oxidase Urate Oxidase; 4puvA00
1VAYA 1R51A 2IBAA 3F2MA 4CW0A 3PKKA 3BJPA 3PLIA 3L9GA 2ZKAA 3L8WA 1XXJA 2YZBA 2R5RA 4N9SA 4OP9A 4PR8A 4XFPA 3PKHA 3PKGA 3PKFA 2PESA 3PLEA 3PK5A 4N9MA 3PJKA 4D13A 3PKTA 4D17A 1XT4A 4POEA 2FXLA 3LD4A 3PKUA 4D12A 5FRCA 3CKUA 4OP6A 5K9GA 3PK3A 3PK6A 3PLJA 5K95A 4PUVA 1R4SA 4CW2A 1WS3A 3D2OA 4N9VA 3P9OA 2ZKBA 3BK8A 2YZCA 2YZDA 1XY3A 3PLGA 1WS2A 4R8XA 3LBGA 4N3MA 1R4UA 4D19A 4CW3A 3PLMA 3PK4A 3WLVA 1VAXA 2IC0A 4R99A 4MB8A 4OQCA 2YZEA 2ICQA 3PK8A 3PKSA 1WRRA 5M98A 5AYJA 4CW6A 3CKSA 3OBPA 3P9FA 5LL1A 1R56A 4FSKA 1J2GA 2FUBA 3PKLA 3PLHA 3GKOA
chains in the Genus database with same CATH superfamily
1VAYA 1R51A 2IBAA 3F2MA 4CW0A 3PKKA 3BJPA 3PLIA 3L9GA 2ZKAA 3L8WA 1XXJA 2YZBA 2R5RA 4N9SA 4OP9A 4PR8A 4XFPA 3PKHA 3PKGA 3PKFA 2PESA 3PLEA 3PK5A 4N9MA 3PJKA 4D13A 3PKTA 4D17A 1XT4A 4POEA 2FXLA 3LD4A 3PKUA 4D12A 5FRCA 3CKUA 4OP6A 5K9GA 3PK3A 3PK6A 3PLJA 5K95A 4PUVA 1R4SA 4CW2A 1WS3A 3D2OA 4N9VA 3P9OA 2ZKBA 3BK8A 2YZCA 2YZDA 1XY3A 3PLGA 1WS2A 4R8XA 3LBGA 4N3MA 1R4UA 4D19A 4CW3A 3PLMA 3PK4A 3WLVA 1VAXA 2IC0A 4R99A 4MB8A 4OQCA 2YZEA 2ICQA 3PK8A 3PKSA 1WRRA 5M98A 5AYJA 4CW6A 3CKSA 3OBPA 3P9FA 5LL1A 1R56A 4FSKA 1J2GA 2FUBA 3PKLA 3PLHA 3GKOA
chains in the Genus database with same CATH topology
1VAYA 1R51A 2IBAA 3F2MA 4CW0A 3PKKA 3BJPA 3PLIA 3L9GA 2ZKAA 3L8WA 1XXJA 2YZBA 2R5RA 4N9SA 4OP9A 4PR8A 4XFPA 3PKHA 3PKGA 3PKFA 2PESA 3PLEA 3PK5A 4N9MA 3PJKA 4D13A 3PKTA 4D17A 1XT4A 4POEA 2FXLA 3LD4A 3PKUA 4D12A 5FRCA 3CKUA 4OP6A 5K9GA 3PK3A 3PK6A 3PLJA 5K95A 4PUVA 1R4SA 4CW2A 1WS3A 3D2OA 4N9VA 3P9OA 2ZKBA 3BK8A 2YZCA 2YZDA 1XY3A 3PLGA 1WS2A 4R8XA 3LBGA 4N3MA 1R4UA 4D19A 4CW3A 3PLMA 3PK4A 3WLVA 1VAXA 2IC0A 4R99A 4MB8A 4OQCA 2YZEA 2ICQA 3PK8A 3PKSA 1WRRA 5M98A 5AYJA 4CW6A 3CKSA 3OBPA 3P9FA 5LL1A 1R56A 4FSKA 1J2GA 2FUBA 3PKLA 3PLHA 3GKOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VAY A;  1R51 A;  2IBA A;  3F2M A;  4CW0 A;  3PKK A;  3BJP A;  3PLI A;  3L9G A;  2ZKA A;  3L8W A;  1XXJ A;  2YZB A;  2R5R A;  4N9S A;  4OP9 A;  4PR8 A;  4XFP A;  3PKH A;  3PKG A;  3PKF A;  2PES A;  3PLE A;  3PK5 A;  4N9M A;  3PJK A;  4D13 A;  3PKT A;  4D17 A;  1XT4 A;  4POE A;  2FXL A;  3LD4 A;  3PKU A;  4D12 A;  5FRC A;  3CKU A;  4OP6 A;  5K9G A;  3PK3 A;  3PK6 A;  3PLJ A;  5K95 A;  4PUV A;  1R4S A;  4CW2 A;  1WS3 A;  3D2O A;  4N9V A;  3P9O A;  2ZKB A;  3BK8 A;  2YZC A;  2YZD A;  1XY3 A;  3PLG A;  1WS2 A;  4R8X A;  3LBG A;  4N3M A;  1R4U A;  4D19 A;  4CW3 A;  3PLM A;  3PK4 A;  3WLV A;  1VAX A;  2IC0 A;  4R99 A;  4MB8 A;  4OQC A;  2YZE A;  2ICQ A;  3PK8 A;  3PKS A;  1WRR A;  5M98 A;  5AYJ A;  4CW6 A;  3CKS A;  3OBP A;  3P9F A;  5LL1 A;  1R56 A;  4FSK A;  1J2G A;  2FUB A;  3PKL A;  3PLH A;  3GKO A; 
#chains in the Genus database with same CATH topology
 1VAY A;  1R51 A;  2IBA A;  3F2M A;  4CW0 A;  3PKK A;  3BJP A;  3PLI A;  3L9G A;  2ZKA A;  3L8W A;  1XXJ A;  2YZB A;  2R5R A;  4N9S A;  4OP9 A;  4PR8 A;  4XFP A;  3PKH A;  3PKG A;  3PKF A;  2PES A;  3PLE A;  3PK5 A;  4N9M A;  3PJK A;  4D13 A;  3PKT A;  4D17 A;  1XT4 A;  4POE A;  2FXL A;  3LD4 A;  3PKU A;  4D12 A;  5FRC A;  3CKU A;  4OP6 A;  5K9G A;  3PK3 A;  3PK6 A;  3PLJ A;  5K95 A;  4PUV A;  1R4S A;  4CW2 A;  1WS3 A;  3D2O A;  4N9V A;  3P9O A;  2ZKB A;  3BK8 A;  2YZC A;  2YZD A;  1XY3 A;  3PLG A;  1WS2 A;  4R8X A;  3LBG A;  4N3M A;  1R4U A;  4D19 A;  4CW3 A;  3PLM A;  3PK4 A;  3WLV A;  1VAX A;  2IC0 A;  4R99 A;  4MB8 A;  4OQC A;  2YZE A;  2ICQ A;  3PK8 A;  3PKS A;  1WRR A;  5M98 A;  5AYJ A;  4CW6 A;  3CKS A;  3OBP A;  3P9F A;  5LL1 A;  1R56 A;  4FSK A;  1J2G A;  2FUB A;  3PKL A;  3PLH A;  3GKO A; 
#chains in the Genus database with same CATH homology
 1VAY A;  1R51 A;  2IBA A;  3F2M A;  4CW0 A;  3PKK A;  3BJP A;  3PLI A;  3L9G A;  2ZKA A;  3L8W A;  1XXJ A;  2YZB A;  2R5R A;  4N9S A;  4OP9 A;  4PR8 A;  4XFP A;  3PKH A;  3PKG A;  3PKF A;  2PES A;  3PLE A;  3PK5 A;  4N9M A;  3PJK A;  4D13 A;  3PKT A;  4D17 A;  1XT4 A;  4POE A;  2FXL A;  3LD4 A;  3PKU A;  4D12 A;  5FRC A;  3CKU A;  4OP6 A;  5K9G A;  3PK3 A;  3PK6 A;  3PLJ A;  5K95 A;  4PUV A;  1R4S A;  4CW2 A;  1WS3 A;  3D2O A;  4N9V A;  3P9O A;  2ZKB A;  3BK8 A;  2YZC A;  2YZD A;  1XY3 A;  3PLG A;  1WS2 A;  4R8X A;  3LBG A;  4N3M A;  1R4U A;  4D19 A;  4CW3 A;  3PLM A;  3PK4 A;  3WLV A;  1VAX A;  2IC0 A;  4R99 A;  4MB8 A;  4OQC A;  2YZE A;  2ICQ A;  3PK8 A;  3PKS A;  1WRR A;  5M98 A;  5AYJ A;  4CW6 A;  3CKS A;  3OBP A;  3P9F A;  5LL1 A;  1R56 A;  4FSK A;  1J2G A;  2FUB A;  3PKL A;  3PLH A;  3GKO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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