4QENA

Crystal structure of kryptonite in complex with mchh dna and sah
Total Genus 135
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
135
sequence length
526
structure length
472
Chain Sequence
LEPHLKVTKCLRLFNKQYLLCVQAKLSRPDLKGVTEMIKAKAILYPRKIIGDLPGIDVGHRFFSRAEMCAVGFHNHWLNGIDYMSMEYEKEYSNYKLPLAVSIVMSGQYEDDLDNADTVTYTGQGGHNLTGNKRQIKDQLLERGNLALKHCCEYNVPVRVTRGHNCKSSYTKRVYTYDGLYKVEKFWAQKGVSGFTVYKYRLKRLEGQPELTTDIEGLVCEDISGGLEFKGIPATNRVDDSPVSPTSGFTYIKSLIIEPNVIIPKSSTGCNCRGSCTDSKKCACAKLNGGNFPYVDLNDGRLIESRDVVFECGPHCGCGPKCVNRTSQKRLRFNLEVFRSAKKGWAVRSWEYIPAGSPVCEYIGVVRRTADVNEYIFEIDCPEFCIDAGSTGNFARFINHSCEPNLFVQCVLSSHQDIRLARVVLFAADNISPMQELTYDYGYALDSVHGPDGKVKQLACYCGALNCRKRLY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transcription/dna
molecule keywords Histone-lysine N-methyltransferase, H3 lysine-9 specific SUV
publication title Mechanism of DNA Methylation-Directed Histone Methylation by KRYPTONITE.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 135
structure length 472
sequence length 526
ec nomenclature ec 2.1.1.43: Histone-lysine N-methyltransferase.
pdb deposition date 2014-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
A PF02182 SAD_SRA SAD/SRA domain
A PF05033 Pre-SET Pre-SET motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 4qenA03
5KJMA 5LSZA 3RIBA 4Z4PA 4QEOA 3M59A 2F69A 1MVHA 2BQZA 3OXLA 5T0KA 4NJ5A 5F6KC 5T5GA 3F9WA 3FPDA 5CPRB 4YPUA 3RQ4A 3RU0A 5KJLA 2O8JA 3TG4A 3KMTA 5KJKA 2W5YA 3MEKA 1N6AA 5HI7A 1ML9A 2QPWA 4H12A 1XQHA 3F9YA 2W5ZA 3OXGA 4J7FA 5ARFA 3SWCA 1MVXA 5TH7A 5AYFA 5JJ0A 5CCLA 3S7JA 2RFIA 1O9SA 3KMAA 3M53A 4LDGA 4FMUA 1MUFA 3M58A 4YNDA 2IGQA 5F6LA 3MO5A 4QENA 4IJ8A 3MO0A 3M56A 4J7IA 3K5KA 3RAYA 4BUPA 3CBPA 4YPAA 3OXFA 5EX3A 4AU7A 1N3JA 3VUZA 3M55A 5TTFA 3S8PA 3IHXA 3N71A 3M5AA 5F5EA 5ARGA 4E47A 3PDNA 4O6FA 4IJDA 3QWPA 4MI5A 3S7BA 5CCMA 1H3IA 5LSXA 3M54A 3CBOA 4MI0A 3EP0A 3S7FA 4I51A 3QWVA 3S7DA 2G46A 3OPEA 4J8OA 5TEGA 3KMJA 5EG2A 4WUYA 3F9ZA 4YNPA 2JV0A 4YNMA 3HNAA 3DALA 3VV0A 4NVQA 1PEGA 4QEPA 4C1QA 4RZ0A 3TG5A 3F9XA 4YPEA 3M57A 3SW9A 1N6CA 5F59A 3QWWA 3MO2A 4JLGA 3DB5A 5JIYA 5JHNA 3OS5A 3CBMA 3BO5A 4JDSA 5JINA 1MT6A 5T0MA 5KJNA 1ZKKA 3RJWA 4O30A 5EX0A 4J83A 5HQ8A 2R3AA 3OOIA
chains in the Genus database with same CATH superfamily
5KJMA 5LSZA 3RIBA 4Z4PA 4QEOA 3M59A 2F69A 1MVHA 2BQZA 3OXLA 5T0KA 4NJ5A 5F6KC 5T5GA 3F9WA 3FPDA 5CPRB 4YPUA 3RQ4A 3RU0A 5KJLA 2O8JA 3TG4A 3KMTA 5KJKA 2W5YA 3MEKA 1N6AA 5HI7A 1ML9A 2QPWA 4H12A 1XQHA 3F9YA 2W5ZA 3OXGA 4J7FA 5ARFA 3SWCA 1MVXA 5TH7A 5AYFA 5JJ0A 5CCLA 3S7JA 2RFIA 1O9SA 3KMAA 3M53A 4LDGA 4FMUA 1MUFA 3M58A 4YNDA 2IGQA 5F6LA 3MO5A 4QENA 4IJ8A 3MO0A 3M56A 4J7IA 3K5KA 3RAYA 4BUPA 3CBPA 4YPAA 3OXFA 5EX3A 4AU7A 1N3JA 3VUZA 3M55A 5TTFA 3S8PA 3IHXA 3N71A 3M5AA 5F5EA 5ARGA 4E47A 3PDNA 4O6FA 4IJDA 3QWPA 4MI5A 3S7BA 5CCMA 1H3IA 5LSXA 3M54A 3CBOA 4MI0A 3EP0A 3S7FA 4I51A 3QWVA 3S7DA 2G46A 3OPEA 4J8OA 5TEGA 3KMJA 5EG2A 4WUYA 3F9ZA 4YNPA 2JV0A 4YNMA 3HNAA 3DALA 3VV0A 4NVQA 1PEGA 4QEPA 4C1QA 4RZ0A 3TG5A 3F9XA 4YPEA 3M57A 3SW9A 1N6CA 5F59A 3QWWA 3MO2A 4JLGA 3DB5A 5JIYA 5JHNA 3OS5A 3CBMA 3BO5A 4JDSA 5JINA 1MT6A 5T0MA 5KJNA 1ZKKA 3RJWA 4O30A 5EX0A 4J83A 5HQ8A 2R3AA 3OOIA
chains in the Genus database with same CATH topology
5KJMA 5LSZA 3RIBA 4Z4PA 4QEOA 3M59A 2F69A 1MVHA 2BQZA 3OXLA 5T0KA 4NJ5A 5F6KC 5T5GA 3F9WA 3FPDA 5CPRB 4YPUA 3RQ4A 3RU0A 5KJLA 2O8JA 3TG4A 3KMTA 5KJKA 2W5YA 3MEKA 1N6AA 5HI7A 1ML9A 2QPWA 4H12A 1XQHA 3F9YA 2W5ZA 3OXGA 4J7FA 5ARFA 3SWCA 1MVXA 5TH7A 5AYFA 5JJ0A 5CCLA 3S7JA 2RFIA 1O9SA 3KMAA 3M53A 4LDGA 4FMUA 1MUFA 3M58A 4YNDA 2IGQA 5F6LA 3MO5A 4QENA 4IJ8A 3MO0A 3M56A 4J7IA 3K5KA 3RAYA 4BUPA 3CBPA 4YPAA 3OXFA 5EX3A 4AU7A 1N3JA 3VUZA 3M55A 5TTFA 3S8PA 3IHXA 3N71A 3M5AA 5F5EA 5ARGA 4E47A 3PDNA 4O6FA 4IJDA 3QWPA 4MI5A 3S7BA 5CCMA 1H3IA 5LSXA 3M54A 3CBOA 4MI0A 3EP0A 3S7FA 4I51A 3QWVA 3S7DA 2G46A 3OPEA 4J8OA 5TEGA 3KMJA 5EG2A 4WUYA 3F9ZA 4YNPA 2JV0A 4YNMA 3HNAA 3DALA 3VV0A 4NVQA 1PEGA 4QEPA 4C1QA 4RZ0A 3TG5A 3F9XA 4YPEA 3M57A 3SW9A 1N6CA 5F59A 3QWWA 3MO2A 4JLGA 3DB5A 5JIYA 5JHNA 3OS5A 3CBMA 3BO5A 4JDSA 5JINA 1MT6A 5T0MA 5KJNA 1ZKKA 3RJWA 4O30A 5EX0A 4J83A 5HQ8A 2R3AA 3OOIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5KJM A;  5LSZ A;  3RIB A;  4Z4P A;  4QEO A;  3M59 A;  2F69 A;  1MVH A;  2BQZ A;  3OXL A;  5T0K A;  4NJ5 A;  5F6K C;  5T5G A;  3F9W A;  3FPD A;  5CPR B;  4YPU A;  3RQ4 A;  3RU0 A;  5KJL A;  2O8J A;  3TG4 A;  3KMT A;  5KJK A;  2W5Y A;  3MEK A;  1N6A A;  5HI7 A;  1ML9 A;  2QPW A;  4H12 A;  1XQH A;  3F9Y A;  2W5Z A;  3OXG A;  4J7F A;  5ARF A;  3SWC A;  1MVX A;  5TH7 A;  5AYF A;  5JJ0 A;  5CCL A;  3S7J A;  2RFI A;  1O9S A;  3KMA A;  3M53 A;  4LDG A;  4FMU A;  1MUF A;  3M58 A;  4YND A;  2IGQ A;  5F6L A;  3MO5 A;  4QEN A;  4IJ8 A;  3MO0 A;  3M56 A;  4J7I A;  3K5K A;  3RAY A;  4BUP A;  3CBP A;  4YPA A;  3OXF A;  5EX3 A;  4AU7 A;  1N3J A;  3VUZ A;  3M55 A;  5TTF A;  3S8P A;  3IHX A;  3N71 A;  3M5A A;  5F5E A;  5ARG A;  4E47 A;  3PDN A;  4O6F A;  4IJD A;  3QWP A;  4MI5 A;  3S7B A;  5CCM A;  1H3I A;  5LSX A;  3M54 A;  3CBO A;  4MI0 A;  3EP0 A;  3S7F A;  4I51 A;  3QWV A;  3S7D A;  2G46 A;  3OPE A;  4J8O A;  5TEG A;  3KMJ A;  5EG2 A;  4WUY A;  3F9Z A;  4YNP A;  2JV0 A;  4YNM A;  3HNA A;  3DAL A;  3VV0 A;  4NVQ A;  1PEG A;  4QEP A;  4C1Q A;  4RZ0 A;  3TG5 A;  3F9X A;  4YPE A;  3M57 A;  3SW9 A;  1N6C A;  5F59 A;  3QWW A;  3MO2 A;  4JLG A;  3DB5 A;  5JIY A;  5JHN A;  3OS5 A;  3CBM A;  3BO5 A;  4JDS A;  5JIN A;  1MT6 A;  5T0M A;  5KJN A;  1ZKK A;  3RJW A;  4O30 A;  5EX0 A;  4J83 A;  5HQ8 A;  2R3A A;  3OOI A; 
#chains in the Genus database with same CATH topology
 5KJM A;  5LSZ A;  3RIB A;  4Z4P A;  4QEO A;  3M59 A;  2F69 A;  1MVH A;  2BQZ A;  3OXL A;  5T0K A;  4NJ5 A;  5F6K C;  5T5G A;  3F9W A;  3FPD A;  5CPR B;  4YPU A;  3RQ4 A;  3RU0 A;  5KJL A;  2O8J A;  3TG4 A;  3KMT A;  5KJK A;  2W5Y A;  3MEK A;  1N6A A;  5HI7 A;  1ML9 A;  2QPW A;  4H12 A;  1XQH A;  3F9Y A;  2W5Z A;  3OXG A;  4J7F A;  5ARF A;  3SWC A;  1MVX A;  5TH7 A;  5AYF A;  5JJ0 A;  5CCL A;  3S7J A;  2RFI A;  1O9S A;  3KMA A;  3M53 A;  4LDG A;  4FMU A;  1MUF A;  3M58 A;  4YND A;  2IGQ A;  5F6L A;  3MO5 A;  4QEN A;  4IJ8 A;  3MO0 A;  3M56 A;  4J7I A;  3K5K A;  3RAY A;  4BUP A;  3CBP A;  4YPA A;  3OXF A;  5EX3 A;  4AU7 A;  1N3J A;  3VUZ A;  3M55 A;  5TTF A;  3S8P A;  3IHX A;  3N71 A;  3M5A A;  5F5E A;  5ARG A;  4E47 A;  3PDN A;  4O6F A;  4IJD A;  3QWP A;  4MI5 A;  3S7B A;  5CCM A;  1H3I A;  5LSX A;  3M54 A;  3CBO A;  4MI0 A;  3EP0 A;  3S7F A;  4I51 A;  3QWV A;  3S7D A;  2G46 A;  3OPE A;  4J8O A;  5TEG A;  3KMJ A;  5EG2 A;  4WUY A;  3F9Z A;  4YNP A;  2JV0 A;  4YNM A;  3HNA A;  3DAL A;  3VV0 A;  4NVQ A;  1PEG A;  4QEP A;  4C1Q A;  4RZ0 A;  3TG5 A;  3F9X A;  4YPE A;  3M57 A;  3SW9 A;  1N6C A;  5F59 A;  3QWW A;  3MO2 A;  4JLG A;  3DB5 A;  5JIY A;  5JHN A;  3OS5 A;  3CBM A;  3BO5 A;  4JDS A;  5JIN A;  1MT6 A;  5T0M A;  5KJN A;  1ZKK A;  3RJW A;  4O30 A;  5EX0 A;  4J83 A;  5HQ8 A;  2R3A A;  3OOI A; 
#chains in the Genus database with same CATH homology
 5KJM A;  5LSZ A;  3RIB A;  4Z4P A;  4QEO A;  3M59 A;  2F69 A;  1MVH A;  2BQZ A;  3OXL A;  5T0K A;  4NJ5 A;  5F6K C;  5T5G A;  3F9W A;  3FPD A;  5CPR B;  4YPU A;  3RQ4 A;  3RU0 A;  5KJL A;  2O8J A;  3TG4 A;  3KMT A;  5KJK A;  2W5Y A;  3MEK A;  1N6A A;  5HI7 A;  1ML9 A;  2QPW A;  4H12 A;  1XQH A;  3F9Y A;  2W5Z A;  3OXG A;  4J7F A;  5ARF A;  3SWC A;  1MVX A;  5TH7 A;  5AYF A;  5JJ0 A;  5CCL A;  3S7J A;  2RFI A;  1O9S A;  3KMA A;  3M53 A;  4LDG A;  4FMU A;  1MUF A;  3M58 A;  4YND A;  2IGQ A;  5F6L A;  3MO5 A;  4QEN A;  4IJ8 A;  3MO0 A;  3M56 A;  4J7I A;  3K5K A;  3RAY A;  4BUP A;  3CBP A;  4YPA A;  3OXF A;  5EX3 A;  4AU7 A;  1N3J A;  3VUZ A;  3M55 A;  5TTF A;  3S8P A;  3IHX A;  3N71 A;  3M5A A;  5F5E A;  5ARG A;  4E47 A;  3PDN A;  4O6F A;  4IJD A;  3QWP A;  4MI5 A;  3S7B A;  5CCM A;  1H3I A;  5LSX A;  3M54 A;  3CBO A;  4MI0 A;  3EP0 A;  3S7F A;  4I51 A;  3QWV A;  3S7D A;  2G46 A;  3OPE A;  4J8O A;  5TEG A;  3KMJ A;  5EG2 A;  4WUY A;  3F9Z A;  4YNP A;  2JV0 A;  4YNM A;  3HNA A;  3DAL A;  3VV0 A;  4NVQ A;  1PEG A;  4QEP A;  4C1Q A;  4RZ0 A;  3TG5 A;  3F9X A;  4YPE A;  3M57 A;  3SW9 A;  1N6C A;  5F59 A;  3QWW A;  3MO2 A;  4JLG A;  3DB5 A;  5JIY A;  5JHN A;  3OS5 A;  3CBM A;  3BO5 A;  4JDS A;  5JIN A;  1MT6 A;  5T0M A;  5KJN A;  1ZKK A;  3RJW A;  4O30 A;  5EX0 A;  4J83 A;  5HQ8 A;  2R3A A;  3OOI A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...