4RVEA

The crystal structure of ecorv endonuclease and of its complexes with cognate and non-cognate dna segments
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
240
structure length
240
Chain Sequence
SLRSDLINALYDENQKYDVCGIISAEGKIYPLGSDTKVLSTIFELFSRPIINKIAEKHGYIVEEPKQQNHYPDFTLYKPSEPNKKIAIDIKTTYTNKENEKIKFTLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLKTYNINELNEIPKPYKGVKVFLQDKWVIAGDLAGSGNTTNIGSIHAHYKDFVEGKGIFDSEDEFLDYWRNYERTSQLRNDKYNNISEYRNWIY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords DNA (5'-D(*GP*GP*GP*AP*TP*AP*TP*CP*CP*C)-3')
publication title The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments.
pubmed rcsb
source organism Escherichia coli
total genus 55
structure length 240
sequence length 240
chains with identical sequence B, C
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 1993-02-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09233 Endonuc-EcoRV Restriction endonuclease EcoRV
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.600.10 Alpha Beta 3-Layer(aba) Sandwich ECO RV Endonuclease; Chain A DNA mismatch repair MutH/Restriction endonuclease, type II 4rveA00
1B94A 3E41A 1RVCA 1EONA 1BUAA 2GIEA 1AZ4A 3E42A 2AUDA 3E45A 1SX5A 2AORA 2AOQA 2B0EA 1EV7A 3E44A 1BSSA 1EOOA 1EO3A 1RV5A 1EOPA 3EBCA 1AZ3A 2RVEA 1EO4A 1B97A 5HLKA 3E3YA 3E43A 1TX3A 4PXGA 2GIIA 2B0DA 2AZOA 1IAWA 1RVBA 1XHUA 1SUZA 5F8AA 1RVEA 1TW8A 1BSUA 2GIJA 1AZ0A 1B95A 2GIHA 4RVEA 2GIGA 1RVAA 1XHVA 2GE5A 1STXA 1KC6A 1AZOA 1SX8A 1BGBA 2REUA 1B96A 3E40A
chains in the Genus database with same CATH superfamily
1B94A 3E41A 1RVCA 1EONA 1BUAA 2GIEA 1AZ4A 3E42A 2AUDA 3E45A 1SX5A 2AORA 2AOQA 2B0EA 1EV7A 3E44A 1BSSA 1EOOA 1EO3A 1RV5A 1EOPA 3EBCA 1AZ3A 2RVEA 1EO4A 2EZVA 5HLKA 1B97A 3E3YA 3E43A 1TX3A 4PXGA 2GIIA 2B0DA 2AZOA 1IAWA 1RVBA 3NDHA 1XHUA 1SUZA 5F8AA 1RVEA 1TW8A 1BSUA 2GIJA 1AZ0A 1B95A 2GIHA 4RVEA 2GIGA 1RVAA 1XHVA 1DMUA 2GE5A 2F03A 1STXA 1KC6A 1AZOA 1SX8A 1BGBA 2REUA 1B96A 3E40A
chains in the Genus database with same CATH topology
1B94A 3E41A 1RVCA 1EONA 1BUAA 2GIEA 1AZ4A 3E42A 2AUDA 3E45A 1SX5A 2AORA 2AOQA 2B0EA 1EV7A 3E44A 1BSSA 1EOOA 1EO3A 1RV5A 1EOPA 3EBCA 1AZ3A 2RVEA 1EO4A 1B97A 5HLKA 3E3YA 3E43A 1TX3A 4PXGA 2GIIA 2B0DA 2AZOA 1IAWA 1RVBA 1XHUA 1SUZA 5F8AA 1RVEA 1TW8A 1BSUA 2GIJA 1AZ0A 1B95A 2GIHA 4RVEA 2GIGA 1RVAA 1XHVA 2GE5A 1STXA 1KC6A 1AZOA 1SX8A 1BGBA 2REUA 1B96A 3E40A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1B94 A;  3E41 A;  1RVC A;  1EON A;  1BUA A;  2GIE A;  1AZ4 A;  3E42 A;  2AUD A;  3E45 A;  1SX5 A;  2AOR A;  2AOQ A;  2B0E A;  1EV7 A;  3E44 A;  1BSS A;  1EOO A;  1EO3 A;  1RV5 A;  1EOP A;  3EBC A;  1AZ3 A;  2RVE A;  1EO4 A;  1B97 A;  5HLK A;  3E3Y A;  3E43 A;  1TX3 A;  4PXG A;  2GII A;  2B0D A;  2AZO A;  1IAW A;  1RVB A;  1XHU A;  1SUZ A;  5F8A A;  1RVE A;  1TW8 A;  1BSU A;  2GIJ A;  1AZ0 A;  1B95 A;  2GIH A;  4RVE A;  2GIG A;  1RVA A;  1XHV A;  2GE5 A;  1STX A;  1KC6 A;  1AZO A;  1SX8 A;  1BGB A;  2REU A;  1B96 A;  3E40 A; 
#chains in the Genus database with same CATH topology
 1B94 A;  3E41 A;  1RVC A;  1EON A;  1BUA A;  2GIE A;  1AZ4 A;  3E42 A;  2AUD A;  3E45 A;  1SX5 A;  2AOR A;  2AOQ A;  2B0E A;  1EV7 A;  3E44 A;  1BSS A;  1EOO A;  1EO3 A;  1RV5 A;  1EOP A;  3EBC A;  1AZ3 A;  2RVE A;  1EO4 A;  2EZV A;  5HLK A;  1B97 A;  3E3Y A;  3E43 A;  1TX3 A;  4PXG A;  2GII A;  2B0D A;  2AZO A;  1IAW A;  1RVB A;  3NDH A;  1XHU A;  1SUZ A;  5F8A A;  1RVE A;  1TW8 A;  1BSU A;  2GIJ A;  1AZ0 A;  1B95 A;  2GIH A;  4RVE A;  2GIG A;  1RVA A;  1XHV A;  1DMU A;  2GE5 A;  2F03 A;  1STX A;  1KC6 A;  1AZO A;  1SX8 A;  1BGB A;  2REU A;  1B96 A;  3E40 A; 
#chains in the Genus database with same CATH homology
 1B94 A;  3E41 A;  1RVC A;  1EON A;  1BUA A;  2GIE A;  1AZ4 A;  3E42 A;  2AUD A;  3E45 A;  1SX5 A;  2AOR A;  2AOQ A;  2B0E A;  1EV7 A;  3E44 A;  1BSS A;  1EOO A;  1EO3 A;  1RV5 A;  1EOP A;  3EBC A;  1AZ3 A;  2RVE A;  1EO4 A;  1B97 A;  5HLK A;  3E3Y A;  3E43 A;  1TX3 A;  4PXG A;  2GII A;  2B0D A;  2AZO A;  1IAW A;  1RVB A;  1XHU A;  1SUZ A;  5F8A A;  1RVE A;  1TW8 A;  1BSU A;  2GIJ A;  1AZ0 A;  1B95 A;  2GIH A;  4RVE A;  2GIG A;  1RVA A;  1XHV A;  2GE5 A;  1STX A;  1KC6 A;  1AZO A;  1SX8 A;  1BGB A;  2REU A;  1B96 A;  3E40 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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