4RYTA

Crystal structure of f222 form of e112a mutant of stationary phase survival protein (sure) from salmonella typhimurium
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
254
structure length
254
Chain Sequence
SMRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMAGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords 5'/3'-nucleotidase SurE
publication title Insights into stabilizing interactions in the distorted domain-swapped dimer of Salmonella typhimurium survival protein.
pubmed doi rcsb
source organism Salmonella typhimurium
total genus 75
structure length 254
sequence length 254
ec nomenclature ec 3.1.3.5: 5'-nucleotidase.
pdb deposition date 2014-12-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01975 SurE Survival protein SurE
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1210.10 Alpha Beta 3-Layer(aba) Sandwich Stationary-phase Survival Protein Sure Homolog; Chain: A, Survival protein SurE-like phosphatase/nucleotidase 4rytA00
4XGPA 2E69A 1J9LA 4XERA 4XGBA 4G9OA 2V4OA 1L5XA 2WQKA 4XH8A 4XJ7A 4ZG5A 1ILVA 2V4NA 4GADA 4RYUA 1J9KA 1J9JA 4RYTA 2E6EA 4XEPA 2E6GA 2E6CA 2E6HA 2E6BA 3TY2A
chains in the Genus database with same CATH superfamily
4XGPA 2E69A 1J9LA 4XERA 4XGBA 4G9OA 2V4OA 1L5XA 2WQKA 4XH8A 4XJ7A 4ZG5A 1ILVA 2V4NA 4GADA 4RYUA 1J9KA 1J9JA 4RYTA 2E6EA 4XEPA 2E6GA 2E6CA 2E6HA 2E6BA 3TY2A
chains in the Genus database with same CATH topology
4XGPA 2E69A 1J9LA 4XERA 4XGBA 4G9OA 2V4OA 1L5XA 2WQKA 4XH8A 4XJ7A 4ZG5A 1ILVA 2V4NA 4GADA 4RYUA 1J9KA 1J9JA 4RYTA 2E6EA 4XEPA 2E6GA 2E6CA 2E6HA 2E6BA 3TY2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XGP A;  2E69 A;  1J9L A;  4XER A;  4XGB A;  4G9O A;  2V4O A;  1L5X A;  2WQK A;  4XH8 A;  4XJ7 A;  4ZG5 A;  1ILV A;  2V4N A;  4GAD A;  4RYU A;  1J9K A;  1J9J A;  4RYT A;  2E6E A;  4XEP A;  2E6G A;  2E6C A;  2E6H A;  2E6B A;  3TY2 A; 
#chains in the Genus database with same CATH topology
 4XGP A;  2E69 A;  1J9L A;  4XER A;  4XGB A;  4G9O A;  2V4O A;  1L5X A;  2WQK A;  4XH8 A;  4XJ7 A;  4ZG5 A;  1ILV A;  2V4N A;  4GAD A;  4RYU A;  1J9K A;  1J9J A;  4RYT A;  2E6E A;  4XEP A;  2E6G A;  2E6C A;  2E6H A;  2E6B A;  3TY2 A; 
#chains in the Genus database with same CATH homology
 4XGP A;  2E69 A;  1J9L A;  4XER A;  4XGB A;  4G9O A;  2V4O A;  1L5X A;  2WQK A;  4XH8 A;  4XJ7 A;  4ZG5 A;  1ILV A;  2V4N A;  4GAD A;  4RYU A;  1J9K A;  1J9J A;  4RYT A;  2E6E A;  4XEP A;  2E6G A;  2E6C A;  2E6H A;  2E6B A;  3TY2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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