4TNIF

Rt xfel structure of photosystem ii 500 ms after the third illumination at 4.6 a resolution
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
35
structure length
35
Chain Sequence
VSYPIFTVRWVAVHTLAVPTIFFLGAIAAMQFIQR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy.
pubmed doi rcsb
molecule tags Electron transport,photosynthesis
molecule keywords Photosystem Q(B) protein 1
total genus 12
structure length 35
sequence length 35
chains with identical sequence f
ec nomenclature
pdb deposition date 2014-06-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF00283 Cytochrom_B559 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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