4TQOA

The crystal structure of methanol dehydrogenase from methylococcus capsulatus (bath)
Total Genus 176
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
176
sequence length
573
structure length
573
Chain Sequence
NSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGMLGQVKAMNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Methanol dehydrogenase protein, large subunit
publication title Structure and Protein-Protein Interactions of Methanol Dehydrogenase from Methylococcus capsulatus (Bath).
pubmed doi rcsb
total genus 176
structure length 573
sequence length 573
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2014-06-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01011 PQQ PQQ enzyme repeat
A PF13360 PQQ_2 PQQ-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.140.10.10 Mainly Beta 8 Propeller Methanol Dehydrogenase; Chain A Quinoprotein alcohol dehydrogenase-like superfamily 4tqoA00
1KV9A 1KB0A 4AAHA 4TQOA 1H4JA 4CVCA 4CVBA 1W6SA 1YIQA 2AD8A 2D0VA 4MAEA 2AD6A 1H4IA 2AD7A 1FLGA 1LRWA 1G72A 4MH1A
chains in the Genus database with same CATH superfamily
3CCCA 1N1MA 3SX4A 5LLSA 4TQOA 2AJDA 3WQHA 1DY7A 1J2EA 1AOQA 1QKSA 1R9NA 1Z68A 1HZUA 2IIVA 4Q1VA 3QBJA 5T4BA 4J3JA 2Z3WA 2AD8A 1N90A 2D0VA 3SWWA 4JH0A 1U8EA 2QT9A 1WCYA 3F8SA 1H9YA 2OAGA 1HJ5A 1TK3A 2AJ8A 2AJCA 2JIDA 1XFDA 3G0DA 4QZVA 2G5PA 4AAHA 2Z3ZA 3C45A 5I7UA 3H0CA 2IITA 3O95A 5J3JA 3HABA 4CVCA 1E2RA 1ORWA 2BUBA 2GBGA 1NU8A 3Q0TA 2BGNA 2OGZA 3G0CA 2G5TA 3G0GA 1HCMA 4LKOA 5T4FA 4DSZA 4MAEA 1H9XA 1GJQA 1H4IA 1NNOA 3BJMA 2RIPA 4G1FA 2RGUA 1BL9A 4KR0A 4PV7A 2P8SA 3HACA 1HZVA 4MH1A 2OQVA 1N15A 2QTBA 3VJKA 1KV9A 4N8DA 1KB0A 3C43A 3OC0A 1H4JA 2AJLI 3VJLA 1GQ1A 1ORVA 3W2TA 3OPMA 2G63A 3EIOA 2QOEA 2DCMA 2OPHA 1W6SA 1YIQA 4PNZA 5T4HA 4WJLA 2GBIA 5ISMA 1RWQA 2AD6A 4DTCA 2QKYA 1HJ4A 2ECFA 3NOXA 1NIRA 1FLGA 4FFVA 1AOMA 2GBFA 3CCBA 3Q8WA 1G72A 1W1IA 4A5SA 3VJMA 2OAEA 1R9MA 1HJ3A 2EEPA 3G0BA 5T4EA 2BGRA 3KWJA 2BUCA 2I3ZA 2I03A 1TKRA 1AOFA 4FFWA 2QJRA 3O9VA 2AJBA 4CVBA 4DSAA 2GBCA 1PFQA 2OQIA 1N50A 1X70A 5KBYA 2BUAA 1NU6A 3KWFA 2OLEA 2D5LA 2AD7A 3D4LA 2ONCA 4N8EA 2FJPA 1LRWA 2HHAA 2I78A 4L72A
chains in the Genus database with same CATH topology
1KV9A 1KB0A 4AAHA 4TQOA 1H4JA 4CVCA 4CVBA 1W6SA 1YIQA 2AD8A 2D0VA 4MAEA 2AD6A 1H4IA 2AD7A 1FLGA 1LRWA 1G72A 4MH1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KV9 A;  1KB0 A;  4AAH A;  4TQO A;  1H4J A;  4CVC A;  4CVB A;  1W6S A;  1YIQ A;  2AD8 A;  2D0V A;  4MAE A;  2AD6 A;  1H4I A;  2AD7 A;  1FLG A;  1LRW A;  1G72 A;  4MH1 A; 
#chains in the Genus database with same CATH topology
 3CCC A;  1N1M A;  3SX4 A;  5LLS A;  4TQO A;  2AJD A;  3WQH A;  1DY7 A;  1J2E A;  1AOQ A;  1QKS A;  1R9N A;  1Z68 A;  1HZU A;  2IIV A;  4Q1V A;  3QBJ A;  5T4B A;  4J3J A;  2Z3W A;  2AD8 A;  1N90 A;  2D0V A;  3SWW A;  4JH0 A;  1U8E A;  2QT9 A;  1WCY A;  3F8S A;  1H9Y A;  2OAG A;  1HJ5 A;  1TK3 A;  2AJ8 A;  2AJC A;  2JID A;  1XFD A;  3G0D A;  4QZV A;  2G5P A;  4AAH A;  2Z3Z A;  3C45 A;  5I7U A;  3H0C A;  2IIT A;  3O95 A;  5J3J A;  3HAB A;  4CVC A;  1E2R A;  1ORW A;  2BUB A;  2GBG A;  1NU8 A;  3Q0T A;  2BGN A;  2OGZ A;  3G0C A;  2G5T A;  3G0G A;  1HCM A;  4LKO A;  5T4F A;  4DSZ A;  4MAE A;  1H9X A;  1GJQ A;  1H4I A;  1NNO A;  3BJM A;  2RIP A;  4G1F A;  2RGU A;  1BL9 A;  4KR0 A;  4PV7 A;  2P8S A;  3HAC A;  1HZV A;  4MH1 A;  2OQV A;  1N15 A;  2QTB A;  3VJK A;  1KV9 A;  4N8D A;  1KB0 A;  3C43 A;  3OC0 A;  1H4J A;  2AJL I;  3VJL A;  1GQ1 A;  1ORV A;  3W2T A;  3OPM A;  2G63 A;  3EIO A;  2QOE A;  2DCM A;  2OPH A;  1W6S A;  1YIQ A;  4PNZ A;  5T4H A;  4WJL A;  2GBI A;  5ISM A;  1RWQ A;  2AD6 A;  4DTC A;  2QKY A;  1HJ4 A;  2ECF A;  3NOX A;  1NIR A;  1FLG A;  4FFV A;  1AOM A;  2GBF A;  3CCB A;  3Q8W A;  1G72 A;  1W1I A;  4A5S A;  3VJM A;  2OAE A;  1R9M A;  1HJ3 A;  2EEP A;  3G0B A;  5T4E A;  2BGR A;  3KWJ A;  2BUC A;  2I3Z A;  2I03 A;  1TKR A;  1AOF A;  4FFW A;  2QJR A;  3O9V A;  2AJB A;  4CVB A;  4DSA A;  2GBC A;  1PFQ A;  2OQI A;  1N50 A;  1X70 A;  5KBY A;  2BUA A;  1NU6 A;  3KWF A;  2OLE A;  2D5L A;  2AD7 A;  3D4L A;  2ONC A;  4N8E A;  2FJP A;  1LRW A;  2HHA A;  2I78 A;  4L72 A; 
#chains in the Genus database with same CATH homology
 1KV9 A;  1KB0 A;  4AAH A;  4TQO A;  1H4J A;  4CVC A;  4CVB A;  1W6S A;  1YIQ A;  2AD8 A;  2D0V A;  4MAE A;  2AD6 A;  1H4I A;  2AD7 A;  1FLG A;  1LRW A;  1G72 A;  4MH1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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