4U3FI

Cytochrome bc1 complex from chicken with designed inhibitor bound
Total Genus 0
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
0
sequence length
47
structure length
44
Chain Sequence
XXXXXXXXXXXXXXPLLCRESMSGRSARRDLVAGISLNAPASVR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Oxidoreductase/oxidoreductase inhibitor
molecule keywords Mitochondrial ubiquinol-cytochrome-c reductase complex core
publication title Rational Design of Highly Potent and Slow-Binding Cytochrome bc1 Inhibitor as Fungicide by Computational Substitution Optimization
doi rcsb
structure length 44
sequence length 47
chains with identical sequence V
ec nomenclature ec 7.1.1.8: Quinol--cytochrome-c reductase.
pdb deposition date 2014-07-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF09165 Ubiq-Cytc-red_N Ubiquinol-cytochrome c reductase 8 kDa, N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.210.10 Mainly Beta Ribbon Cytochrome Bc1 Complex; Chain I Cytochrome Bc1 Complex; Chain I 4u3fI00
1NU1I 3L71I 1PPJI 4U3FI 3TGUI 3L75I 1SQQI 3H1HI 3L74I 1L0LI 3H1II 1NTMI 1NTKI 3H1JI 3L70I 1PP9I 3H1LI 1SQBI 1SQXI 1NTZI 1SQPI 1SQVI 3L73I 3H1KI 2FYUI 2A06I 1L0NI 3L72I 3CWBI
chains in the Genus database with same CATH superfamily
1NU1I 3L71I 1PPJI 4U3FI 3TGUI 3L75I 1SQQI 3H1HI 3L74I 1L0LI 3H1II 1NTMI 1NTKI 3H1JI 3L70I 1PP9I 3H1LI 1SQBI 1SQXI 1NTZI 1SQPI 1SQVI 3L73I 3H1KI 2FYUI 2A06I 1L0NI 3L72I 3CWBI
chains in the Genus database with same CATH topology
1NU1I 3L71I 1PPJI 4U3FI 3TGUI 3L75I 1SQQI 3H1HI 3L74I 1L0LI 3H1II 1NTMI 1NTKI 3H1JI 3L70I 1PP9I 3H1LI 1SQBI 1SQXI 1NTZI 1SQPI 1SQVI 3L73I 3H1KI 2FYUI 2A06I 1L0NI 3L72I 3CWBI
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1NU1 I;  3L71 I;  1PPJ I;  4U3F I;  3TGU I;  3L75 I;  1SQQ I;  3H1H I;  3L74 I;  1L0L I;  3H1I I;  1NTM I;  1NTK I;  3H1J I;  3L70 I;  1PP9 I;  3H1L I;  1SQB I;  1SQX I;  1NTZ I;  1SQP I;  1SQV I;  3L73 I;  3H1K I;  2FYU I;  2A06 I;  1L0N I;  3L72 I;  3CWB I; 
#chains in the Genus database with same CATH topology
 1NU1 I;  3L71 I;  1PPJ I;  4U3F I;  3TGU I;  3L75 I;  1SQQ I;  3H1H I;  3L74 I;  1L0L I;  3H1I I;  1NTM I;  1NTK I;  3H1J I;  3L70 I;  1PP9 I;  3H1L I;  1SQB I;  1SQX I;  1NTZ I;  1SQP I;  1SQV I;  3L73 I;  3H1K I;  2FYU I;  2A06 I;  1L0N I;  3L72 I;  3CWB I; 
#chains in the Genus database with same CATH homology
 1NU1 I;  3L71 I;  1PPJ I;  4U3F I;  3TGU I;  3L75 I;  1SQQ I;  3H1H I;  3L74 I;  1L0L I;  3H1I I;  1NTM I;  1NTK I;  3H1J I;  3L70 I;  1PP9 I;  3H1L I;  1SQB I;  1SQX I;  1NTZ I;  1SQP I;  1SQV I;  3L73 I;  3H1K I;  2FYU I;  2A06 I;  1L0N I;  3L72 I;  3CWB I;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite