4UBPA

Structure of bacillus pasteurii urease inhibited with acetohydroxamic acid at 1.55 a resolution
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
100
structure length
100
Chain Sequence
MHLNPAEKEKLQIFLASELLLRRKARGLKLNYPEAVAIITSFIMEGARDGKTVAMLMEEGKHVLTRDDVMEGVPEMIDDIQAEATFPDGTKLVTVHNPIS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords PROTEIN (UREASE (CHAIN A))
publication title The complex of Bacillus pasteurii urease with acetohydroxamate anion from X-ray data at 1.55 A resolution.
pubmed doi rcsb
total genus 31
structure length 100
sequence length 100
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 1999-02-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00547 Urease_gamma Urease, gamma subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.280.10 Alpha Beta 2-Layer Sandwich Urease; subunit A Urease, gamma-like subunit 4ubpA00
4H9MA 4Z42A 1EJRA 5G4HA 1EJVA 1IE7A 1A5KA 1E9YA 4GY7A 1UBPA 3QGAA 4EPBA 1A5OA 1FWGA 4UBPA 1EJXA 4G7EB 4GOAA 4EPEA 1KRBA 4FURA 3LA4A 1A5MA 1EJTA 1EJSA 1A5NA 1FWDA 3QGKA 2KAUA 5FSDA 1EJWA 5A6TA 4CEXA 5FSEA 1E9ZA 1FWAA 1FWJA 4AC7A 2UBPA 1KRCA 2FVHA 1KRAA 1FWFA 4EP8A 1FWCA 3UBPA 1FWHA 1A5LA 1FWIA 4CEUA 1FWBA 4EPDA 1FWEA 1EF2C 1S3TA 1EJUA 4G7EA
chains in the Genus database with same CATH superfamily
4H9MA 4Z42A 1EJRA 5G4HA 1EJVA 1IE7A 1A5KA 1E9YA 4GY7A 1UBPA 3QGAA 4EPBA 1A5OA 1FWGA 4UBPA 1EJXA 4G7EB 4GOAA 4EPEA 1KRBA 4FURA 3LA4A 1A5MA 1EJTA 1EJSA 1A5NA 1FWDA 3QGKA 2KAUA 5FSDA 1EJWA 5A6TA 4CEXA 5FSEA 1E9ZA 1FWAA 1FWJA 4AC7A 2UBPA 1KRCA 2FVHA 1KRAA 1FWFA 4EP8A 1FWCA 3UBPA 1FWHA 1A5LA 1FWIA 4CEUA 1FWBA 4EPDA 1FWEA 1EF2C 1S3TA 1EJUA 4G7EA
chains in the Genus database with same CATH topology
4H9MA 4Z42A 1EJRA 5G4HA 1EJVA 1IE7A 1A5KA 1E9YA 4GY7A 1UBPA 3QGAA 4EPBA 1A5OA 1FWGA 4UBPA 1EJXA 4G7EB 4GOAA 4EPEA 1KRBA 4FURA 3LA4A 1A5MA 1EJTA 1EJSA 1A5NA 1FWDA 3QGKA 2KAUA 5FSDA 1EJWA 5A6TA 4CEXA 5FSEA 1E9ZA 1FWAA 1FWJA 4AC7A 2UBPA 1KRCA 2FVHA 1KRAA 1FWFA 4EP8A 1FWCA 3UBPA 1FWHA 1A5LA 1FWIA 4CEUA 1FWBA 4EPDA 1FWEA 1EF2C 1S3TA 1EJUA 4G7EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H9M A;  4Z42 A;  1EJR A;  5G4H A;  1EJV A;  1IE7 A;  1A5K A;  1E9Y A;  4GY7 A;  1UBP A;  3QGA A;  4EPB A;  1A5O A;  1FWG A;  4UBP A;  1EJX A;  4G7E B;  4GOA A;  4EPE A;  1KRB A;  4FUR A;  3LA4 A;  1A5M A;  1EJT A;  1EJS A;  1A5N A;  1FWD A;  3QGK A;  2KAU A;  5FSD A;  1EJW A;  5A6T A;  4CEX A;  5FSE A;  1E9Z A;  1FWA A;  1FWJ A;  4AC7 A;  2UBP A;  1KRC A;  2FVH A;  1KRA A;  1FWF A;  4EP8 A;  1FWC A;  3UBP A;  1FWH A;  1A5L A;  1FWI A;  4CEU A;  1FWB A;  4EPD A;  1FWE A;  1EF2 C;  1S3T A;  1EJU A;  4G7E A; 
#chains in the Genus database with same CATH topology
 4H9M A;  4Z42 A;  1EJR A;  5G4H A;  1EJV A;  1IE7 A;  1A5K A;  1E9Y A;  4GY7 A;  1UBP A;  3QGA A;  4EPB A;  1A5O A;  1FWG A;  4UBP A;  1EJX A;  4G7E B;  4GOA A;  4EPE A;  1KRB A;  4FUR A;  3LA4 A;  1A5M A;  1EJT A;  1EJS A;  1A5N A;  1FWD A;  3QGK A;  2KAU A;  5FSD A;  1EJW A;  5A6T A;  4CEX A;  5FSE A;  1E9Z A;  1FWA A;  1FWJ A;  4AC7 A;  2UBP A;  1KRC A;  2FVH A;  1KRA A;  1FWF A;  4EP8 A;  1FWC A;  3UBP A;  1FWH A;  1A5L A;  1FWI A;  4CEU A;  1FWB A;  4EPD A;  1FWE A;  1EF2 C;  1S3T A;  1EJU A;  4G7E A; 
#chains in the Genus database with same CATH homology
 4H9M A;  4Z42 A;  1EJR A;  5G4H A;  1EJV A;  1IE7 A;  1A5K A;  1E9Y A;  4GY7 A;  1UBP A;  3QGA A;  4EPB A;  1A5O A;  1FWG A;  4UBP A;  1EJX A;  4G7E B;  4GOA A;  4EPE A;  1KRB A;  4FUR A;  3LA4 A;  1A5M A;  1EJT A;  1EJS A;  1A5N A;  1FWD A;  3QGK A;  2KAU A;  5FSD A;  1EJW A;  5A6T A;  4CEX A;  5FSE A;  1E9Z A;  1FWA A;  1FWJ A;  4AC7 A;  2UBP A;  1KRC A;  2FVH A;  1KRA A;  1FWF A;  4EP8 A;  1FWC A;  3UBP A;  1FWH A;  1A5L A;  1FWI A;  4CEU A;  1FWB A;  4EPD A;  1FWE A;  1EF2 C;  1S3T A;  1EJU A;  4G7E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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