4UDF1A

Structural basis of human parechovirus neutralization by human monoclonal antibodies
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
183
structure length
183
Chain Sequence
DLVKIAQLFSVMADSTTPSENHGVDAKGYFKWSATTAPQSIVHRNIVYLRLFPNLNVFVNSYSYFRGSLVLRLSVYASTFNRGRLRMGFFPNATTDSTSTLDNAIYTICDIGSDNSFEITIPYSFSTWMRKTNGHPIGLFQIEVLNRLTYNSSSPSEVYCIVQGKMGQDARFFCPTGSVVTFQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
molecule keywords Protein VP3
publication title Structural Basis of Human Parechovirus Neutralization by Human Monoclonal Antibodies.
pubmed doi rcsb
total genus 21
structure length 183
sequence length 183
chains with identical sequence 12, 16, 1E, 1I, 1M, 1Q, 1U, 1Y, 22, 26, 2A, 2E, 2I, 2M, 2Q, 2U, 2Y, 32, 36, 3A, 3E, 3I, 3M, 3Q, 3U, 3Y, 42, 46, 4A, 4E, 4I, 4M, 4Q, 4U, 4Y, 52, 56, 5A, 5E, 5I, 5M, 5Q, 5U, 5Y, 62, 66, 6A, 6E, 6I, 6M, 6Q, 6U, 6Y, 7A, 7E, 7I, 7M, 7Q, 7U
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2014-12-10
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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