4UM3S

Engineered ls-achbp with alpha4-alpha4 binding pocket in complex with ns3920
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
205
structure length
201
Chain Sequence
LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLAHVVSDGEVQYTPSIRQRFSCDVSGVDTQSGATCRIKIGSWTHHSREISVDPTSDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords ACETYLCHOLINE BINDING PROTEIN
publication title Achbp Engineered to Mimic the Alpha4-Alpha4 Binding Pocket in Alpha4Beta2 Nicotinic Acetylcholine Receptors Reveals Interface Specific Interactions Important for Binding and Activity
pubmed doi rcsb
source organism Lymnaea stagnalis
total genus 46
structure length 201
sequence length 205
ec nomenclature
pdb deposition date 2014-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 4um3S00
2WZYA 2XQ7A 2XZ5A 4IL9A 3P50A 2XQAA 2ZJVA 5J5GA 4HFHA 2XQ8A 3U8MA 5AFMB 4A98A 5HEUA 3JAFA 4ZJTA 5HCMA 3WTNA 5J5HA 5AFKA 5J5FA 4WV9A 4ZZCA 5LXBA 3RIAA 3WIPA 2C9TA 4D01A 3SQ9A 5AINA 4COFA 5AFLA 4LMLA 4A97A 5SYOA 2VL0A 4BFQA 2BYSA 2BYNA 4QABA 4NZBA 3U8NA 4ZR6A 5FJVA 3UQ7A 2Y57A 4HFCA 2WNLA 3EAMA 3UU5A 3JAEA 2W8GA 4HFIA 4AFHA 3WTLA 2WNJA 2XQ3A 3TLSA 3WTJA 3PMZA 4HFBA 4HFDA 5BRXA 2Y56A 2YN6A 3P4WA 4HFEA 4LMKA 5J0ZA 2UZ6A 3IGQA 4NPPA 4ZZBA 2PGZA 2BJ0A 2BYRA 3JADA 3LSVA 4UM3A 4UM3S 3U8JA 4TNVA 2W8FA 3TLVA 4B5DA 2WN9A 2Y58A 4FRRA 4ZRUA 5BP0A 5HEHA 3RI5A 4ZK1A 1UW6A 2Y7YA 4TWFA 4ILBA 2QC1B 4QAAA 3UQ4A 5KZUA 5J5IA 5HEGA 2X00D 2XNVA 4UY2A 3U8LA 3ZDHA 3UU8A 4Z90A 3RHWA 3T4MA 3GUAA 4TWHA 5CO5A 2XQ9A 2YKSA 4IREA 3TLWA 3EHZA 1UX2A 2YMEA 2BG9E 3ZKRA 5HEOA 3WTMA 1I9BA 3TLTA 2XQ4A 4LMJA 3RIFA 2BG9A 2BG9C 3C79A 4TNWA 3WTIA 2BYPA 2WNCA 3UU3A 2XYSA 2YOEA 4ILCA 4ILAA 2BG9B 4PIRA 3SQ6A 4F8HA 4QH4A 1UV6A 5BW2A 4EZ1A 5JMEA 4AFGA 2XNUA 4BQTA 2BR8A 2XZ6A 2XQ5A 4QH1A 2XYTA 3WTKA 4HQPA 3WTOA 5IUXA 4TWDA 3EI0A 4UM3P 4UXUA 2PH9A 4QACA 3UUBA 5L4EA 5HCJA 4X5TA 2Y54A 3RQWA 5L47A 2XNTA 4ZJSA 3TLUA 3C84A 5LG3A 4XK9A 3SH1A 2YMDA 4XHEA 4UM1A 4IL4A 3RQUA 4Z91A 4AFTA 4DBMA 3UU4A 3ZDGA 4QH5A 2XQ6A 2BR7A 5AFJA 3U8KA 3WTHA 3PEOA 5CFBA 2ZJUA 5KE4A 5AFNA 2BYQA 3UU6A 5AFHA 5TVCA 5AFMA 5HEJA 2X00A 3SIOA 4ALXA 4ZK4A 5L4HA
chains in the Genus database with same CATH superfamily
2WZYA 2XQ7A 2XZ5A 4IL9A 3P50A 2XQAA 2ZJVA 5J5GA 4HFHA 2XQ8A 3U8MA 5AFMB 4A98A 5HEUA 3JAFA 4ZJTA 5HCMA 3WTNA 5J5HA 5AFKA 5J5FA 4WV9A 4ZZCA 5LXBA 3RIAA 3WIPA 2C9TA 4D01A 3SQ9A 5AINA 4COFA 5AFLA 4LMLA 4A97A 5SYOA 2VL0A 4BFQA 2BYSA 2BYNA 4QABA 4NZBA 3U8NA 4ZR6A 5FJVA 3UQ7A 2Y57A 4HFCA 2WNLA 3EAMA 3UU5A 3JAEA 2W8GA 4HFIA 4AFHA 3WTLA 2WNJA 2XQ3A 3TLSA 3WTJA 3PMZA 4HFBA 4HFDA 5BRXA 2Y56A 2YN6A 3P4WA 4HFEA 4LMKA 5J0ZA 2UZ6A 3IGQA 4NPPA 4ZZBA 2PGZA 2BJ0A 2BYRA 3JADA 3LSVA 4UM3A 4UM3S 3U8JA 4TNVA 2W8FA 3TLVA 4B5DA 2WN9A 2Y58A 4FRRA 4ZRUA 5BP0A 5HEHA 3RI5A 4ZK1A 1UW6A 2Y7YA 4TWFA 4ILBA 2QC1B 4QAAA 3UQ4A 5KZUA 5J5IA 5HEGA 2X00D 2XNVA 4UY2A 3U8LA 3ZDHA 3UU8A 4Z90A 3RHWA 3T4MA 3GUAA 4TWHA 5CO5A 2XQ9A 2YKSA 4IREA 3TLWA 3EHZA 1UX2A 2YMEA 2BG9E 3ZKRA 5HEOA 3WTMA 1I9BA 3TLTA 2XQ4A 4LMJA 3RIFA 2BG9A 2BG9C 3C79A 4TNWA 3WTIA 2BYPA 2WNCA 3UU3A 2XYSA 2YOEA 4ILCA 4ILAA 2BG9B 4PIRA 3SQ6A 4F8HA 4QH4A 1UV6A 5BW2A 4EZ1A 5JMEA 4AFGA 2XNUA 4BQTA 2BR8A 2XZ6A 2XQ5A 4QH1A 2XYTA 3WTKA 4HQPA 3WTOA 5IUXA 4TWDA 3EI0A 4UM3P 4UXUA 2PH9A 4QACA 3UUBA 5L4EA 5HCJA 4X5TA 2Y54A 3RQWA 5L47A 2XNTA 4ZJSA 3TLUA 3C84A 5LG3A 4XK9A 3SH1A 2YMDA 4XHEA 4UM1A 4IL4A 3RQUA 4Z91A 4AFTA 4DBMA 3UU4A 3ZDGA 4QH5A 2XQ6A 2BR7A 5AFJA 3U8KA 3WTHA 3PEOA 5CFBA 2ZJUA 5KE4A 5AFNA 2BYQA 3UU6A 5AFHA 5TVCA 5AFMA 5HEJA 2X00A 3SIOA 4ALXA 4ZK4A 5L4HA
chains in the Genus database with same CATH topology
2WZYA 2XQ7A 2XZ5A 4IL9A 3P50A 2XQAA 2ZJVA 5J5GA 4HFHA 2XQ8A 3U8MA 5AFMB 4A98A 5HEUA 3JAFA 4ZJTA 5HCMA 3WTNA 5J5HA 5AFKA 5J5FA 4WV9A 4ZZCA 5LXBA 3RIAA 3WIPA 2C9TA 4D01A 3SQ9A 5AINA 4COFA 5AFLA 4LMLA 4A97A 5SYOA 2VL0A 4BFQA 2BYSA 2BYNA 4QABA 4NZBA 3U8NA 4ZR6A 5FJVA 3UQ7A 2Y57A 4HFCA 2WNLA 3EAMA 3UU5A 3JAEA 2W8GA 4HFIA 4AFHA 3WTLA 2WNJA 2XQ3A 3TLSA 3WTJA 3PMZA 4HFBA 4HFDA 5BRXA 2Y56A 2YN6A 3P4WA 4HFEA 4LMKA 5J0ZA 2UZ6A 3IGQA 4NPPA 4ZZBA 2PGZA 2BJ0A 2BYRA 3JADA 3LSVA 4UM3A 4UM3S 3U8JA 4TNVA 2W8FA 3TLVA 4B5DA 2WN9A 2Y58A 4FRRA 4ZRUA 5BP0A 5HEHA 3RI5A 4ZK1A 1UW6A 2Y7YA 4TWFA 4ILBA 2QC1B 4QAAA 3UQ4A 5KZUA 5J5IA 5HEGA 2X00D 2XNVA 4UY2A 3U8LA 3ZDHA 3UU8A 4Z90A 3RHWA 3T4MA 3GUAA 4TWHA 5CO5A 2XQ9A 2YKSA 4IREA 3TLWA 3EHZA 1UX2A 2YMEA 2BG9E 3ZKRA 5HEOA 3WTMA 1I9BA 3TLTA 2XQ4A 4LMJA 3RIFA 2BG9A 2BG9C 3C79A 4TNWA 3WTIA 2BYPA 2WNCA 3UU3A 2XYSA 2YOEA 4ILCA 4ILAA 2BG9B 4PIRA 3SQ6A 4F8HA 4QH4A 1UV6A 5BW2A 4EZ1A 5JMEA 4AFGA 2XNUA 4BQTA 2BR8A 2XZ6A 2XQ5A 4QH1A 2XYTA 3WTKA 4HQPA 3WTOA 5IUXA 4TWDA 3EI0A 4UM3P 4UXUA 2PH9A 4QACA 3UUBA 5L4EA 5HCJA 4X5TA 2Y54A 3RQWA 5L47A 2XNTA 4ZJSA 3TLUA 3C84A 5LG3A 4XK9A 3SH1A 2YMDA 4XHEA 4UM1A 4IL4A 3RQUA 4Z91A 4AFTA 4DBMA 3UU4A 3ZDGA 4QH5A 2XQ6A 2BR7A 5AFJA 3U8KA 3WTHA 3PEOA 5CFBA 2ZJUA 5KE4A 5AFNA 2BYQA 3UU6A 5AFHA 5TVCA 5AFMA 5HEJA 2X00A 3SIOA 4ALXA 4ZK4A 5L4HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WZY A;  2XQ7 A;  2XZ5 A;  4IL9 A;  3P50 A;  2XQA A;  2ZJV A;  5J5G A;  4HFH A;  2XQ8 A;  3U8M A;  5AFM B;  4A98 A;  5HEU A;  3JAF A;  4ZJT A;  5HCM A;  3WTN A;  5J5H A;  5AFK A;  5J5F A;  4WV9 A;  4ZZC A;  5LXB A;  3RIA A;  3WIP A;  2C9T A;  4D01 A;  3SQ9 A;  5AIN A;  4COF A;  5AFL A;  4LML A;  4A97 A;  5SYO A;  2VL0 A;  4BFQ A;  2BYS A;  2BYN A;  4QAB A;  4NZB A;  3U8N A;  4ZR6 A;  5FJV A;  3UQ7 A;  2Y57 A;  4HFC A;  2WNL A;  3EAM A;  3UU5 A;  3JAE A;  2W8G A;  4HFI A;  4AFH A;  3WTL A;  2WNJ A;  2XQ3 A;  3TLS A;  3WTJ A;  3PMZ A;  4HFB A;  4HFD A;  5BRX A;  2Y56 A;  2YN6 A;  3P4W A;  4HFE A;  4LMK A;  5J0Z A;  2UZ6 A;  3IGQ A;  4NPP A;  4ZZB A;  2PGZ A;  2BJ0 A;  2BYR A;  3JAD A;  3LSV A;  4UM3 A;  4UM3 S;  3U8J A;  4TNV A;  2W8F A;  3TLV A;  4B5D A;  2WN9 A;  2Y58 A;  4FRR A;  4ZRU A;  5BP0 A;  5HEH A;  3RI5 A;  4ZK1 A;  1UW6 A;  2Y7Y A;  4TWF A;  4ILB A;  2QC1 B;  4QAA A;  3UQ4 A;  5KZU A;  5J5I A;  5HEG A;  2X00 D;  2XNV A;  4UY2 A;  3U8L A;  3ZDH A;  3UU8 A;  4Z90 A;  3RHW A;  3T4M A;  3GUA A;  4TWH A;  5CO5 A;  2XQ9 A;  2YKS A;  4IRE A;  3TLW A;  3EHZ A;  1UX2 A;  2YME A;  2BG9 E;  3ZKR A;  5HEO A;  3WTM A;  1I9B A;  3TLT A;  2XQ4 A;  4LMJ A;  3RIF A;  2BG9 A;  2BG9 C;  3C79 A;  4TNW A;  3WTI A;  2BYP A;  2WNC A;  3UU3 A;  2XYS A;  2YOE A;  4ILC A;  4ILA A;  2BG9 B;  4PIR A;  3SQ6 A;  4F8H A;  4QH4 A;  1UV6 A;  5BW2 A;  4EZ1 A;  5JME A;  4AFG A;  2XNU A;  4BQT A;  2BR8 A;  2XZ6 A;  2XQ5 A;  4QH1 A;  2XYT A;  3WTK A;  4HQP A;  3WTO A;  5IUX A;  4TWD A;  3EI0 A;  4UM3 P;  4UXU A;  2PH9 A;  4QAC A;  3UUB A;  5L4E A;  5HCJ A;  4X5T A;  2Y54 A;  3RQW A;  5L47 A;  2XNT A;  4ZJS A;  3TLU A;  3C84 A;  5LG3 A;  4XK9 A;  3SH1 A;  2YMD A;  4XHE A;  4UM1 A;  4IL4 A;  3RQU A;  4Z91 A;  4AFT A;  4DBM A;  3UU4 A;  3ZDG A;  4QH5 A;  2XQ6 A;  2BR7 A;  5AFJ A;  3U8K A;  3WTH A;  3PEO A;  5CFB A;  2ZJU A;  5KE4 A;  5AFN A;  2BYQ A;  3UU6 A;  5AFH A;  5TVC A;  5AFM A;  5HEJ A;  2X00 A;  3SIO A;  4ALX A;  4ZK4 A;  5L4H A; 
#chains in the Genus database with same CATH topology
 2WZY A;  2XQ7 A;  2XZ5 A;  4IL9 A;  3P50 A;  2XQA A;  2ZJV A;  5J5G A;  4HFH A;  2XQ8 A;  3U8M A;  5AFM B;  4A98 A;  5HEU A;  3JAF A;  4ZJT A;  5HCM A;  3WTN A;  5J5H A;  5AFK A;  5J5F A;  4WV9 A;  4ZZC A;  5LXB A;  3RIA A;  3WIP A;  2C9T A;  4D01 A;  3SQ9 A;  5AIN A;  4COF A;  5AFL A;  4LML A;  4A97 A;  5SYO A;  2VL0 A;  4BFQ A;  2BYS A;  2BYN A;  4QAB A;  4NZB A;  3U8N A;  4ZR6 A;  5FJV A;  3UQ7 A;  2Y57 A;  4HFC A;  2WNL A;  3EAM A;  3UU5 A;  3JAE A;  2W8G A;  4HFI A;  4AFH A;  3WTL A;  2WNJ A;  2XQ3 A;  3TLS A;  3WTJ A;  3PMZ A;  4HFB A;  4HFD A;  5BRX A;  2Y56 A;  2YN6 A;  3P4W A;  4HFE A;  4LMK A;  5J0Z A;  2UZ6 A;  3IGQ A;  4NPP A;  4ZZB A;  2PGZ A;  2BJ0 A;  2BYR A;  3JAD A;  3LSV A;  4UM3 A;  4UM3 S;  3U8J A;  4TNV A;  2W8F A;  3TLV A;  4B5D A;  2WN9 A;  2Y58 A;  4FRR A;  4ZRU A;  5BP0 A;  5HEH A;  3RI5 A;  4ZK1 A;  1UW6 A;  2Y7Y A;  4TWF A;  4ILB A;  2QC1 B;  4QAA A;  3UQ4 A;  5KZU A;  5J5I A;  5HEG A;  2X00 D;  2XNV A;  4UY2 A;  3U8L A;  3ZDH A;  3UU8 A;  4Z90 A;  3RHW A;  3T4M A;  3GUA A;  4TWH A;  5CO5 A;  2XQ9 A;  2YKS A;  4IRE A;  3TLW A;  3EHZ A;  1UX2 A;  2YME A;  2BG9 E;  3ZKR A;  5HEO A;  3WTM A;  1I9B A;  3TLT A;  2XQ4 A;  4LMJ A;  3RIF A;  2BG9 A;  2BG9 C;  3C79 A;  4TNW A;  3WTI A;  2BYP A;  2WNC A;  3UU3 A;  2XYS A;  2YOE A;  4ILC A;  4ILA A;  2BG9 B;  4PIR A;  3SQ6 A;  4F8H A;  4QH4 A;  1UV6 A;  5BW2 A;  4EZ1 A;  5JME A;  4AFG A;  2XNU A;  4BQT A;  2BR8 A;  2XZ6 A;  2XQ5 A;  4QH1 A;  2XYT A;  3WTK A;  4HQP A;  3WTO A;  5IUX A;  4TWD A;  3EI0 A;  4UM3 P;  4UXU A;  2PH9 A;  4QAC A;  3UUB A;  5L4E A;  5HCJ A;  4X5T A;  2Y54 A;  3RQW A;  5L47 A;  2XNT A;  4ZJS A;  3TLU A;  3C84 A;  5LG3 A;  4XK9 A;  3SH1 A;  2YMD A;  4XHE A;  4UM1 A;  4IL4 A;  3RQU A;  4Z91 A;  4AFT A;  4DBM A;  3UU4 A;  3ZDG A;  4QH5 A;  2XQ6 A;  2BR7 A;  5AFJ A;  3U8K A;  3WTH A;  3PEO A;  5CFB A;  2ZJU A;  5KE4 A;  5AFN A;  2BYQ A;  3UU6 A;  5AFH A;  5TVC A;  5AFM A;  5HEJ A;  2X00 A;  3SIO A;  4ALX A;  4ZK4 A;  5L4H A; 
#chains in the Genus database with same CATH homology
 2WZY A;  2XQ7 A;  2XZ5 A;  4IL9 A;  3P50 A;  2XQA A;  2ZJV A;  5J5G A;  4HFH A;  2XQ8 A;  3U8M A;  5AFM B;  4A98 A;  5HEU A;  3JAF A;  4ZJT A;  5HCM A;  3WTN A;  5J5H A;  5AFK A;  5J5F A;  4WV9 A;  4ZZC A;  5LXB A;  3RIA A;  3WIP A;  2C9T A;  4D01 A;  3SQ9 A;  5AIN A;  4COF A;  5AFL A;  4LML A;  4A97 A;  5SYO A;  2VL0 A;  4BFQ A;  2BYS A;  2BYN A;  4QAB A;  4NZB A;  3U8N A;  4ZR6 A;  5FJV A;  3UQ7 A;  2Y57 A;  4HFC A;  2WNL A;  3EAM A;  3UU5 A;  3JAE A;  2W8G A;  4HFI A;  4AFH A;  3WTL A;  2WNJ A;  2XQ3 A;  3TLS A;  3WTJ A;  3PMZ A;  4HFB A;  4HFD A;  5BRX A;  2Y56 A;  2YN6 A;  3P4W A;  4HFE A;  4LMK A;  5J0Z A;  2UZ6 A;  3IGQ A;  4NPP A;  4ZZB A;  2PGZ A;  2BJ0 A;  2BYR A;  3JAD A;  3LSV A;  4UM3 A;  4UM3 S;  3U8J A;  4TNV A;  2W8F A;  3TLV A;  4B5D A;  2WN9 A;  2Y58 A;  4FRR A;  4ZRU A;  5BP0 A;  5HEH A;  3RI5 A;  4ZK1 A;  1UW6 A;  2Y7Y A;  4TWF A;  4ILB A;  2QC1 B;  4QAA A;  3UQ4 A;  5KZU A;  5J5I A;  5HEG A;  2X00 D;  2XNV A;  4UY2 A;  3U8L A;  3ZDH A;  3UU8 A;  4Z90 A;  3RHW A;  3T4M A;  3GUA A;  4TWH A;  5CO5 A;  2XQ9 A;  2YKS A;  4IRE A;  3TLW A;  3EHZ A;  1UX2 A;  2YME A;  2BG9 E;  3ZKR A;  5HEO A;  3WTM A;  1I9B A;  3TLT A;  2XQ4 A;  4LMJ A;  3RIF A;  2BG9 A;  2BG9 C;  3C79 A;  4TNW A;  3WTI A;  2BYP A;  2WNC A;  3UU3 A;  2XYS A;  2YOE A;  4ILC A;  4ILA A;  2BG9 B;  4PIR A;  3SQ6 A;  4F8H A;  4QH4 A;  1UV6 A;  5BW2 A;  4EZ1 A;  5JME A;  4AFG A;  2XNU A;  4BQT A;  2BR8 A;  2XZ6 A;  2XQ5 A;  4QH1 A;  2XYT A;  3WTK A;  4HQP A;  3WTO A;  5IUX A;  4TWD A;  3EI0 A;  4UM3 P;  4UXU A;  2PH9 A;  4QAC A;  3UUB A;  5L4E A;  5HCJ A;  4X5T A;  2Y54 A;  3RQW A;  5L47 A;  2XNT A;  4ZJS A;  3TLU A;  3C84 A;  5LG3 A;  4XK9 A;  3SH1 A;  2YMD A;  4XHE A;  4UM1 A;  4IL4 A;  3RQU A;  4Z91 A;  4AFT A;  4DBM A;  3UU4 A;  3ZDG A;  4QH5 A;  2XQ6 A;  2BR7 A;  5AFJ A;  3U8K A;  3WTH A;  3PEO A;  5CFB A;  2ZJU A;  5KE4 A;  5AFN A;  2BYQ A;  3UU6 A;  5AFH A;  5TVC A;  5AFM A;  5HEJ A;  2X00 A;  3SIO A;  4ALX A;  4ZK4 A;  5L4H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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