4V8GBT

Crystal structure of rmf bound to the 70s ribosome.
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
131
structure length
131
Chain Sequence
MNRGALIKLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRNLSDREIRRKLRADRKRIDQDRAAERAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 16S Ribosomal RNA
publication title How hibernation factors RMF, HPF, and YfiA turn off protein synthesis.
pubmed doi rcsb
source organism Escherichia coli
total genus 25
structure length 131
sequence length 131
chains with identical sequence DT
ec nomenclature
pdb deposition date 2011-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
BT PF01245 Ribosomal_L19 Ribosomal protein L19
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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