4WPEA

Crystal structure of hof1p f-bar domain
Total Genus 118
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
275
structure length
275
Chain Sequence
HSYSYEACFWDPNDNGVNILLGHISQGIRSCDSMILFFKQRSELEKDYARRLGAITGKLDKDIGTNMDYGKLNETFNVVLSVEKARAQSHSKQSEILFRQIYTDTKAFAANLQARYTTLSGKIERLRMDKFNKKKGCEVLQKKLQDAQIRFRDLQLNENNMIGAKRVEHNKRELLKWESNSQEYKVQLDVLKQEYKASQKFWIHEWAQLSCELQEMENARISFLQSKLQQFATSSMETYILEQTKMDMLTNHLNSFTAADEISTFSKENGTGRLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Comparison of Saccharomyces cerevisiae F-BAR Domain Structures Reveals a Conserved Inositol Phosphate Binding Site.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Protein binding
molecule keywords Cytokinesis protein 2
total genus 118
structure length 275
sequence length 275
ec nomenclature
pdb deposition date 2014-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00611 FCH Fes/CIP4, and EFC/F-BAR homology domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 4wpeA00
3ABHA 2C08A 2RAJA 2D1LA 2EFLA 4NQIA 4ATMA 4DYLA 2Z0VA 3QWEA 1X03A 3HAJA 1I4DA 3DYTA 3SYVA 2D4CA 2YKTA 2RAIA 3HAIA 3QNIA 1I4LA 2RAKA 1Y2OA 1URUA 2X3WA 2V0OA 4NSWA 5C5BA 3HAHA 2ELBA 3PLTA 3OK8A 4WPCA 3M3WA 1X04A 2X3VA 3CAZA 2EFKA 2X3XA 2Z0OA 4H8SA 1I49A 3Q0KA 4I1QA 4BNEA 5C5BB 4DCNC 3I2WA 3SOGA 1WDZA 2Q12A 3G9GA 2Q13A 3ACOA 3Q84A 1ZWWA 4AKVA 1I4TA 4AVMA 4WPEA 2Z0NA 3QE6A 2FICA 4FZSA 3LLLA
chains in the Genus database with same CATH superfamily
2F7PA 2F7QA 4UDYX 2C08A 4ATMA 2ND0A 2OO2A 4DYLA 1HWWA 1X03A 3CKDA 3C7NA 3EJQA 3LMFA 4KIKB 4EZRA 4PO2A 3VEBA 2F1AA 3EJTA 1PS3A 1ZYLA 4H6HA 4AZCB 2RAIA 3KDRA 3QNIA 4IW0A 1GNTA 3ERCC 5TKYA 3KAVA 4FZPA 1W9MA 1LQ7A 2ELBA 1GNLA 3BVUA 2WINM 4WPCA 1R33A 1X04A 3B52X 3DX4A 3L3OM 1OA1A 2QXLA 1GN9A 3BLBA 3OHXM 2X3XA 2ZXQA 4IWQA 4EZWA 4H8SA 4D8JA 4EZNA 2ND1A 4NPHA 2Q12A 3DX3A 3DX1A 1I4TA 2ALWA 3L3PA 3QE6A 3B51X 2OW7A 3CVRA 3CZNA 4FZSA 4JWDA 2FYVA 3DDGA 4G6QA 4IM2A 3QA8A 4FZOA 4UDXX 3T49A 4HR1A 4AZ5A 1DKXA 1QWUA 2F7RA 2EFLA 2RAJA 4NQIA 3BUIA 4AZ7A 4AZHA 3QWEA 4EZPA 2JNKA 4JL9A 3T48A 1E9VA 2LM0A 4AZGA 4JWCA 3HAIA 5E84A 3F7WA 1I4LA 2F7OA 1QX1A 1Y2OA 4AZ6A 4JNFA 3BUBA 4R5KA 3OWGA 2KHOA 2OBLA 3EJUA 3D51A 5KBPA 4IWPA 3CAZA 4AZIA 1O7DC 2EFKA 4EZQA 4DCNC 3GI7A 3RV0A 4BNEA 4JNEA 2PY6A 3I2WA 3G9GA 4EZSA 4EZVA 1SU6A 3EJPA 4WPEA 3CV5A 3DPPA 4AVMA 1YWMA 2EWFA 2OZNB 3B53X 2WYHA 3EJRA 1SUFA 2FICA 2YL8A 2GA9D 1R5EA 4R5JA 3O3NB 1OA0A 3FD9A 3RV1A 2QFFA 3ABHA 2EX3B 1E1DA 3BVXA 4F01A 3CZSA 4IM0A 1DKYA 1SU8A 2D1LA 3RPMA 3BVVA 1TQWA 2YIVX 4EZXA 3HAJA 1UPXA 2YI8A 4EZZA 3VKHA 2GAFD 2QKWA 3DYTA 3BUPA 3SYVA 3DPOA 2D4CA 2YIAA 2YIBA 3BVTA 4AZCA 1TQSA 3D2FA 3LVTA 3DX0A 2GF4A 3ZEDA 2V0OA 4NSWA 1HXKA 2PMRA 2RT6A 4IM3A 2WYIA 3M3WA 1DKZA 1MJGA 4HR1B 2X3VA 3D50A 3BUDA 3O3OB 4JWIA 4JN4A 3I01A 4F00A 2Z0OA 2MI7A 4I1QA 3I04A 4EZUA 3D4YA 3ACOA 2F1BA 1ZWWA 4AKVA 3O3MB 3BVWA 2Z0NA 2YL6A 2YI9A 3DX2A 4JWEA 1O7DB 3T47A 4B9QA 3LLLA 4KIKA 2X5CA 4M0MA 3BUQA 4E81A 4EZYA 2Z8YA 2F18A 1HTYA 2YL5A 3D2EA 2YLLA 2Z0VA 2OBMA 3ER8C 2LXYA 3T46A 1I4DA 3UITA 1SU7A 1JQKA 1U00A 1E2UA 4H6IA 2YKTA 1OAOA 4HYBA 1TQVA 2YLAA 3KAWA 5FLEX 4E3CA 2RAKA 3DDFA 4HY9A 1URUA 2X3WA 4FM3A 5FIGA 4R5LA 5C5BA 3HAHA 4IWOA 3EJSA 3DPQA 3PLTA 3OK8A 4R5IA 1QWNA 1TQUA 1TQTA 3QNJA 2YL9A 4JLCA 2JNSA 4EZTA 1I49A 3D52A 3Q0KA 4EZOA 5C5BB 3I39X 3VEAA 3SOGA 1WDZA 1R34A 2Q13A 3Q84A 4AZBA 3T4AG 3ER9B 2O0I1 4R5GA 2OW6A 3D4ZA 2N3KA 2NCZA 3A98A
chains in the Genus database with same CATH topology
3ABHA 2C08A 2RAJA 2D1LA 2EFLA 4NQIA 4ATMA 4DYLA 2Z0VA 3QWEA 1X03A 3HAJA 1I4DA 3DYTA 3SYVA 2D4CA 2YKTA 2RAIA 3HAIA 3QNIA 1I4LA 2RAKA 1Y2OA 1URUA 2X3WA 2V0OA 4NSWA 5C5BA 3HAHA 2ELBA 3PLTA 3OK8A 4WPCA 3M3WA 1X04A 2X3VA 3CAZA 2EFKA 2X3XA 2Z0OA 4H8SA 1I49A 3Q0KA 4I1QA 4BNEA 5C5BB 4DCNC 3I2WA 3SOGA 1WDZA 2Q12A 3G9GA 2Q13A 3ACOA 3Q84A 1ZWWA 4AKVA 1I4TA 4AVMA 4WPEA 2Z0NA 3QE6A 2FICA 4FZSA 3LLLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ABH A;  2C08 A;  2RAJ A;  2D1L A;  2EFL A;  4NQI A;  4ATM A;  4DYL A;  2Z0V A;  3QWE A;  1X03 A;  3HAJ A;  1I4D A;  3DYT A;  3SYV A;  2D4C A;  2YKT A;  2RAI A;  3HAI A;  3QNI A;  1I4L A;  2RAK A;  1Y2O A;  1URU A;  2X3W A;  2V0O A;  4NSW A;  5C5B A;  3HAH A;  2ELB A;  3PLT A;  3OK8 A;  4WPC A;  3M3W A;  1X04 A;  2X3V A;  3CAZ A;  2EFK A;  2X3X A;  2Z0O A;  4H8S A;  1I49 A;  3Q0K A;  4I1Q A;  4BNE A;  5C5B B;  4DCN C;  3I2W A;  3SOG A;  1WDZ A;  2Q12 A;  3G9G A;  2Q13 A;  3ACO A;  3Q84 A;  1ZWW A;  4AKV A;  1I4T A;  4AVM A;  4WPE A;  2Z0N A;  3QE6 A;  2FIC A;  4FZS A;  3LLL A; 
#chains in the Genus database with same CATH topology
 2F7P A;  2F7Q A;  4UDY X;  2C08 A;  4ATM A;  2ND0 A;  2OO2 A;  4DYL A;  1HWW A;  1X03 A;  3CKD A;  3C7N A;  3EJQ A;  3LMF A;  4KIK B;  4EZR A;  4PO2 A;  3VEB A;  2F1A A;  3EJT A;  1PS3 A;  1ZYL A;  4H6H A;  4AZC B;  2RAI A;  3KDR A;  3QNI A;  4IW0 A;  1GNT A;  3ERC C;  5TKY A;  3KAV A;  4FZP A;  1W9M A;  1LQ7 A;  2ELB A;  1GNL A;  3BVU A;  2WIN M;  4WPC A;  1R33 A;  1X04 A;  3B52 X;  3DX4 A;  3L3O M;  1OA1 A;  2QXL A;  1GN9 A;  3BLB A;  3OHX M;  2X3X A;  2ZXQ A;  4IWQ A;  4EZW A;  4H8S A;  4D8J A;  4EZN A;  2ND1 A;  4NPH A;  2Q12 A;  3DX3 A;  3DX1 A;  1I4T A;  2ALW A;  3L3P A;  3QE6 A;  3B51 X;  2OW7 A;  3CVR A;  3CZN A;  4FZS A;  4JWD A;  2FYV A;  3DDG A;  4G6Q A;  4IM2 A;  3QA8 A;  4FZO A;  4UDX X;  3T49 A;  4HR1 A;  4AZ5 A;  1DKX A;  1QWU A;  2F7R A;  2EFL A;  2RAJ A;  4NQI A;  3BUI A;  4AZ7 A;  4AZH A;  3QWE A;  4EZP A;  2JNK A;  4JL9 A;  3T48 A;  1E9V A;  2LM0 A;  4AZG A;  4JWC A;  3HAI A;  5E84 A;  3F7W A;  1I4L A;  2F7O A;  1QX1 A;  1Y2O A;  4AZ6 A;  4JNF A;  3BUB A;  4R5K A;  3OWG A;  2KHO A;  2OBL A;  3EJU A;  3D51 A;  5KBP A;  4IWP A;  3CAZ A;  4AZI A;  1O7D C;  2EFK A;  4EZQ A;  4DCN C;  3GI7 A;  3RV0 A;  4BNE A;  4JNE A;  2PY6 A;  3I2W A;  3G9G A;  4EZS A;  4EZV A;  1SU6 A;  3EJP A;  4WPE A;  3CV5 A;  3DPP A;  4AVM A;  1YWM A;  2EWF A;  2OZN B;  3B53 X;  2WYH A;  3EJR A;  1SUF A;  2FIC A;  2YL8 A;  2GA9 D;  1R5E A;  4R5J A;  3O3N B;  1OA0 A;  3FD9 A;  3RV1 A;  2QFF A;  3ABH A;  2EX3 B;  1E1D A;  3BVX A;  4F01 A;  3CZS A;  4IM0 A;  1DKY A;  1SU8 A;  2D1L A;  3RPM A;  3BVV A;  1TQW A;  2YIV X;  4EZX A;  3HAJ A;  1UPX A;  2YI8 A;  4EZZ A;  3VKH A;  2GAF D;  2QKW A;  3DYT A;  3BUP A;  3SYV A;  3DPO A;  2D4C A;  2YIA A;  2YIB A;  3BVT A;  4AZC A;  1TQS A;  3D2F A;  3LVT A;  3DX0 A;  2GF4 A;  3ZED A;  2V0O A;  4NSW A;  1HXK A;  2PMR A;  2RT6 A;  4IM3 A;  2WYI A;  3M3W A;  1DKZ A;  1MJG A;  4HR1 B;  2X3V A;  3D50 A;  3BUD A;  3O3O B;  4JWI A;  4JN4 A;  3I01 A;  4F00 A;  2Z0O A;  2MI7 A;  4I1Q A;  3I04 A;  4EZU A;  3D4Y A;  3ACO A;  2F1B A;  1ZWW A;  4AKV A;  3O3M B;  3BVW A;  2Z0N A;  2YL6 A;  2YI9 A;  3DX2 A;  4JWE A;  1O7D B;  3T47 A;  4B9Q A;  3LLL A;  4KIK A;  2X5C A;  4M0M A;  3BUQ A;  4E81 A;  4EZY A;  2Z8Y A;  2F18 A;  1HTY A;  2YL5 A;  3D2E A;  2YLL A;  2Z0V A;  2OBM A;  3ER8 C;  2LXY A;  3T46 A;  1I4D A;  3UIT A;  1SU7 A;  1JQK A;  1U00 A;  1E2U A;  4H6I A;  2YKT A;  1OAO A;  4HYB A;  1TQV A;  2YLA A;  3KAW A;  5FLE X;  4E3C A;  2RAK A;  3DDF A;  4HY9 A;  1URU A;  2X3W A;  4FM3 A;  5FIG A;  4R5L A;  5C5B A;  3HAH A;  4IWO A;  3EJS A;  3DPQ A;  3PLT A;  3OK8 A;  4R5I A;  1QWN A;  1TQU A;  1TQT A;  3QNJ A;  2YL9 A;  4JLC A;  2JNS A;  4EZT A;  1I49 A;  3D52 A;  3Q0K A;  4EZO A;  5C5B B;  3I39 X;  3VEA A;  3SOG A;  1WDZ A;  1R34 A;  2Q13 A;  3Q84 A;  4AZB A;  3T4A G;  3ER9 B;  2O0I 1;  4R5G A;  2OW6 A;  3D4Z A;  2N3K A;  2NCZ A;  3A98 A; 
#chains in the Genus database with same CATH homology
 3ABH A;  2C08 A;  2RAJ A;  2D1L A;  2EFL A;  4NQI A;  4ATM A;  4DYL A;  2Z0V A;  3QWE A;  1X03 A;  3HAJ A;  1I4D A;  3DYT A;  3SYV A;  2D4C A;  2YKT A;  2RAI A;  3HAI A;  3QNI A;  1I4L A;  2RAK A;  1Y2O A;  1URU A;  2X3W A;  2V0O A;  4NSW A;  5C5B A;  3HAH A;  2ELB A;  3PLT A;  3OK8 A;  4WPC A;  3M3W A;  1X04 A;  2X3V A;  3CAZ A;  2EFK A;  2X3X A;  2Z0O A;  4H8S A;  1I49 A;  3Q0K A;  4I1Q A;  4BNE A;  5C5B B;  4DCN C;  3I2W A;  3SOG A;  1WDZ A;  2Q12 A;  3G9G A;  2Q13 A;  3ACO A;  3Q84 A;  1ZWW A;  4AKV A;  1I4T A;  4AVM A;  4WPE A;  2Z0N A;  3QE6 A;  2FIC A;  4FZS A;  3LLL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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