4XQKA

Atp-dependent type isp restriction-modification enzyme llabiii bound to dna
Total Genus 415
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
415
sequence length
1566
structure length
1517
Chain Sequence
KQTFDDLINQINTGTLFEKLTLAYLKNEPTYKALYQNVWLLSEVPESYGIPVDLVAEQKNGDLVAIQAKFYTNKVGKSEINSFVAELGKSYYQRGLIVSTMDDWNSNARETIDQNEKGIEIIGLSDLRNSQIDWSQFNFERPENVVVKKPKKLRDYQQTAKENALAHFKENDRGQLIMAPGTGKTFTSLKISEALSKDKDGPFKVLYLVPSIQLLTQTLRGWNNDTELTMTSMAVTSTEDIKASDIGYPATTSSKKILQNWHDFESLPKQTDMLVVFSTYQSIEVIGEAQKEGFPEFDFIISDEAHRTTGAHEAAKEASAFSKVHSNNNVKGLKRMYQTATPKIYGESAKKNAKDKSILLSSMDDESKYGEVFFRMGFGQAVSRDILTDYKVMVLAVDEAAIQKDMQRTLADPENGLNIDDVGRIVGIWNGMMRRNGYKKNSPYDGAPLERAIAFTRTIEESKKVSSQFEEVVNEYISIHLSMRHADGQMNALQKGEVLDWLANPNKPADEARIVSNVRFLTEGIDIPTLDAVIFLSPKKSQVDIVQAVGRIMRKAEGKDYGYIILPIVIPTGEKPETILDNNKNYETVWQVINALRSVDERFEAMIDKLNMAKPKQLKVIGVGSSPDTELEFEWDKFEGAIFGKIVQKVGDRKYLENWSKDVAKIAERQINWIKNKLSDKKDPISLEFKKFVSSLQHNINDSIDEKQAAEMLSQHLITKPIFEALFSEYSFVNQNPVSQAMESIVSELEKAGFAKEQENLEPLYESVRMRAEGIEKAEDKQKIIVTLYDKFFKTAFKATTERLGIVFTPIEVVDFIVHSVDDVLKKHFGKSLASKDVHILDPFTGTGTFIVRTLTYLKEQMDAGEISLADITRKFMKELHANEIVLLSYYIAAINIESTFDEINGDEEGYVPFEGIVLTDTFESTETEDTLDDDYFGTNDERLKRQQKVPITVIMGNPPYSAKQKNEDGNQIRTTYEKLDASLQNSWVETSTATNKNNLFDSYIRAMRWSSDRISDNGVIGFITNNSFIDGNAMDGMRQSLLEEFSDIYVLNLKGGIRGKTKDQSALEGGNIFDIMTGVTIIMLIKKSDYTVEGRIHYLDIGNNLDKYQKLEKLKNWKSLNGATSEFQNIIPNEKGDWINQRNSNFDELISLGNKKGSDSLFIDYTGGLKTGRDNWSWNFSKEQVELSMKSSIDYYNQYLGDTNIYKEDVPDISWTRSLKQRFERRETQSWQGERMYLGMYRPFTKKHVYYAQAWIDRQYQMTKVLPSSTSSNLMISLSNKTGGKQFSTLIVDVLPDVNLFTGGSQNLPKYLYRNNDTGNLFDNSEKYSAIRHEVLNKLPNLSEEDAMYYVYGLFHSIQYGKVYYEDLAKSFPKIPNVKHKEKYIKIGKELADLHLNYENQPICEGIDVQISELNYRVKKMKHPKKGVLDTIIYNESITIKNIPEKAYEYVVNGRPAIEWIINQYQVKTDKKSGITDDPNEFSDDPKYILNLLLSVITVSMRTLELIDELPEFEIQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/dna
molecule keywords LlaBIII
publication title Translocation-coupled DNA cleavage by the Type ISP restriction-modification enzymes
pubmed doi rcsb
source organism Lactococcus lactis subsp. cremoris
total genus 415
structure length 1517
sequence length 1566
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00271 Helicase_C Helicase conserved C-terminal domain
A PF02384 N6_Mtase N-6 DNA Methylase
A PF04851 ResIII Type III restriction enzyme, res subunit
A PF13156 Mrr_cat_2 Restriction endonuclease
A PF18135 Type_ISP_C Type ISP C-terminal specificity domain
Image from the rcsb pdb (www.rcsb.org)
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