4XR2A

Escherichia coli replication terminator protein (tus) h114a mutant complexed with dna- tera lock.
Total Genus 87
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
305
structure length
305
Chain Sequence
DLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTVESELPTAARFEWVARHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLIIPRLHLYVAD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Replication/dna
molecule keywords DNA replication terminus site-binding protein
publication title Replisome speed determines the efficiency of the Tus-Ter replication termination barrier.
pubmed doi rcsb
source organism Escherichia coli (strain k12)
total genus 87
structure length 305
sequence length 305
ec nomenclature
pdb deposition date 2015-01-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05472 Ter DNA replication terminus site-binding protein (Ter protein)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.54.10 Alpha Beta 2-Layer Sandwich Replication Terminator Protein; Chain A, domain 2 Replication Terminator Protein; Chain A, domain 2 4xr2A02
3.50.14.10 Alpha Beta 3-Layer(bba) Sandwich Replication Terminator Protein (Tus); Chain A, domain 1 Replication terminator Tus, domain 1 superfamily/Replication terminator Tus 4xr2A01
4XR0A 4XR3A 1ECRA 2EWJA 4XR1A 2I05A 2I06A 4XR2A
chains in the Genus database with same CATH superfamily
1WXOA 1TKEA 1ECRA 2EWJA 4XR1A 2I05A 3WQZA 4XR0A 3RHUA 1TJEA 2ZZFA 2I06A 1WNUA 3RFNA 1QF6A 4XR3A 1TKGA 2ZZGA 1V7OA 2ZTGA 2ZZEA 1TKYA 1V4PA 4XR2A
chains in the Genus database with same CATH topology
1WXOA 1TKEA 1ECRA 2EWJA 4XR1A 2I05A 3WQZA 4XR0A 3RHUA 1TJEA 2ZZFA 2I06A 1WNUA 3RFNA 1QF6A 4XR3A 1TKGA 2ZZGA 1V7OA 2ZTGA 2ZZEA 1TKYA 1V4PA 4XR2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XR0 A;  4XR3 A;  1ECR A;  2EWJ A;  4XR1 A;  2I05 A;  2I06 A;  4XR2 A; 
#chains in the Genus database with same CATH topology
 1WXO A;  1TKE A;  1ECR A;  2EWJ A;  4XR1 A;  2I05 A;  3WQZ A;  4XR0 A;  3RHU A;  1TJE A;  2ZZF A;  2I06 A;  1WNU A;  3RFN A;  1QF6 A;  4XR3 A;  1TKG A;  2ZZG A;  1V7O A;  2ZTG A;  2ZZE A;  1TKY A;  1V4P A;  4XR2 A; 
#chains in the Genus database with same CATH homology
 1WXO A;  1TKE A;  1ECR A;  2EWJ A;  4XR1 A;  2I05 A;  3WQZ A;  4XR0 A;  3RHU A;  1TJE A;  2ZZF A;  2I06 A;  1WNU A;  3RFN A;  1QF6 A;  4XR3 A;  1TKG A;  2ZZG A;  1V7O A;  2ZTG A;  2ZZE A;  1TKY A;  1V4P A;  4XR2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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