4XVXA

Crystal structure of an acyl-acp dehydrogenase
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
377
structure length
371
Chain Sequence
SDLDDFRGLLAKAFDERVVAWTAEAEAQERFPRQLIEHLGVCGVFDAKWATDARPDVGKLVELAFALGQLASAGIGVGVSLHDSAIAILRRFGKSDYLRDICDQAIRGAAVLCIGASEESGGSDLQIVETEIRSRDGGFEVRGVKKFVSLSPIADHIMVVARSVDHGNVAVVAVPAAQVSVQTPYRKVGAGPLDTAAVCIDTWVPADALVARAGTGLAAISWGLAHERMSIAGQIAASCQRAIGITLARMMSRRQFGQTLFEHQALRLRMADLQARVDLLRYALHGIAEQGRLELRTAAAVKVTAARLGEEVISECMHIFGGAGYLVDETTLGKWWRDMKLARVGGGTDEVLWELVAAGMTPDHDGYAAVV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Acyl-[acyl-carrier-protein] dehydrogenase MbtN
publication title A covalent adduct of MbtN, an acyl-ACP dehydrogenase from Mycobacterium tuberculosis, reveals an unusual acyl-binding pocket.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 148
structure length 371
sequence length 377
chains with identical sequence B
ec nomenclature ec 1.3.99.-:
pdb deposition date 2015-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 4xvxA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 4xvxA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 4xvxA02
4ZYJA 2YYJA 3EONA 3MXLA 3SWOA 2ZAFA 4RM7A 4DOYA 4G5EA 4Q1OA 1SIRA 2VIGA 4Q5CA 4P13A 4X28C 3FCJA 2YYMA 4JEKA 2A1TA 2C12A 3MPJA 3F29A 3BNGA 4IV6A 4Q0TA 1EGEA 3OWAA 3L1TA 3LGQA 3D9DA 3D9GA 2WBIA 3MPIA 1QDBA 3AFEA 3MKHA 3TTBA 4O5MA 1W07A 2OT4A 2JBSA 2JIFA 1GU6A 3SCEA 2YYGA 1U8VA 2E81A 4L3ZA 1IS2A 3UBRA 2OR0A 3PFDA 4U83A 1FS7A 3RKHA 1RX0A 4KTOA 2Z1QA 4XVXA 2C0UA 4Q4UA 3B96A 3SXQA 4X28A 4HR3A 2DVLA 2IX6A 1BUCA 3AFFA 1T9GA 3R7KA 2VR0A 3BNHA 3BNFA 1JQIA 1UKWA 1WS9A 4W9UA 1FS8A 2R0MA 3D1IA 2YYIA 1EGDA 1IVHA 3HWCA 2ZO5A 2EBAA 3BNJA 4WJYA 1EGCA 3M9VA 2REHA 3OWMA 3S7WA 2RDZA 3D9FA 3D6BA 2DDHA 3FO3A 3OIBA 2RFQA 2JBTA 4M9AA 2R0NA 2YYKA 3GNCA 5K3JA 3TORA 5K3IA 3P4TA 1OAHA 4L3YA 3D9EA 3SF6A 3II9A 3MMOA 2PG0A 3X0XA 1FS9A 4NXLA 3UU9A 4ZXVA 4L1FA 2D29A 4Q17A 5K3HA 3EOMA 4Q5BA 4OO2A 4IRNA 3X0YA 3GM6A 2JBRA 2CX9A 2FONA 3MDEA 2RF7A 3NF4A 4L38A 2IX5A 4KCFA 4L3XA 2J7AA 2UXWA 3MDDA 4N5FA 3GQTA 2YYLA 3LG1A 5K3GA 1R2JA 1UDYA 1SIQA 2E80A
chains in the Genus database with same CATH superfamily
4ZYJA 4KSAA 2YYJA 3EONA 3MXLA 3SWOA 1GJVA 1XFVA 4E02A 2ZAFA 4RM7A 4DOYA 4G5EA 4Q1OA 3VKGA 2FP2A 1SIRA 4AI6A 2VIGA 4Q5CA 4P13A 4FF3A 1LVCA 2VF1A 3Q0AA 4LQQB 5M4PA 4H7QA 4X28C 3FCJA 3Q24A 2YYMA 4JEKA 2A1TA 1X90A 2F6LA 2C12A 3MPJA 3F29A 3BNGA 2Q8FA 4IV6A 4Q0TA 1EGEA 3OWAA 3L1TA 2R02A 3KMLA 3C46A 2GBBA 3CRLA 3D9DA 3LGQA 4FZ4A 4G97A 5B5VA 4F0XA 3D9GA 2WBIA 3MPIA 1K90A 1QDBA 2ZKJA 3AFEA 3MKHA 2BU2A 3TTBA 4O5MA 1RJ4A 4HKSA 1W07A 2OT4A 2JBSA 1Y8NA 2JIFA 4FF2A 1GU6A 3SCEA 2HJNA 1U8VA 1S26A 2E81A 1IS2A 1XFYA 2YYGA 4L3ZA 3UBRA 2OR0A 3PFDA 1RJ1A 2AO2A 4MP2A 5BRKA 2AZEA 4U83A 1FS7A 3RKHA 1RX0A 4KTOA 1Y8PA 2EBHX 2Z1QA 4XVXA 1XFUA 1K8TA 2C0UA 4Q4UA 4JIZA 3B96A 2OJQA 2BU5A 3SXQA 4X28A 4E00A 1RP3A 4HR3A 3CE2A 2Q8HA 1K93A 2DVLA 4QICA 2IX6A 1BUCA 3N0RA 3AFFA 1T9GA 3C3LA 3R7KA 2VR0A 3BNHA 5EZ3A 4V25A 2XS8A 3BNFA 2BU7A 2QR4A 3CRKA 2CJ5A 1JQIA 1UKWA 4MPCA 1WS9A 4W9UA 1FS8A 2CJ7A 5GJWE 3DJLA 2R0MA 3D1IA 4MP7A 5B6BA 2YYIA 5M4NA 4FF1A 1EGDA 1R3BA 1XFZA 5B5WA 2ZDYA 1IVHA 4DZYA 3D2RA 2E0AA 3HWCA 4FF4A 4AKHA 2ZO5A 2EBAA 3BNJA 4LQSB 2CJ6A 1JM6A 5M4KA 4H81A 4WJYA 2PO4A 2Q8IA 3VADA 1EGCA 3U33A 5M4MA 3M9VA 2LFWA 2REHA 5J71A 1GKXA 3OWMA 2FP1A 4JIOA 3S7WA 1Y8OA 4H85A 4AKIA 2RDZA 3D9FA 4HKRA 2PNRA 1Y0VA 5GJVE 4J1VA 3TZ0A 2BU6A 3D6BA 2DDHA 4KS9A 3FO3A 4MPNA 4KSFA 3OIBA 1GKZA 2RFQA 2R03A 2JBTA 2Q8GA 4P79A 4M9AA 2R0NA 2YYKA 3GNCA 5K3JA 3TORA 3Q23A 3Q22A 3VKHA 5K3IA 3P4TA 1OAHA 2YGWA 4L3YA 3D9EA 3SF6A 1SK6A 3II9A 2OEXA 2OEVA 2R05A 1PK0A 2ZDXA 3X29A 3C2PA 5J6AA 1XFXA 3MMOA 2PG0A 1SC5A 3X0XA 1FS9A 2XS1A 4NXLA 3UU9A 4ZXVA 4L1FA 5BRMA 2D29A 4AKGA 2CJ4A 4Q17A 5K3HA 3EOMA 4Q5BA 4OO2A 4IRNA 2EC5A 3X0YA 3GM6A 2JBRA 1PI1A 2CX9A 2FONA 3MDEA 1X91A 2BU8A 2RF7A 3NF4A 4E01A 4L38A 3TZ2A 1X8ZA 2IX5A 4KCFA 2EBFX 2XQRB 2J7AA 4L3XA 2BTZA 2UXWA 4V26A 2CJ8A 3MDDA 4N5FA 4MPEA 3TZ4A 3GQTA 2YYLA 3LG1A 5K3GA 1XFWA 3TZ5A 1R2JA 1UDYA 1SIQA 2E80A 1XG2B
chains in the Genus database with same CATH topology
4ZYJA 2YYJA 3EONA 3MXLA 3SWOA 2ZAFA 4RM7A 4DOYA 4G5EA 4Q1OA 1SIRA 2VIGA 4Q5CA 4P13A 4X28C 3FCJA 2YYMA 4JEKA 2A1TA 2C12A 3MPJA 3F29A 3BNGA 4IV6A 4Q0TA 1EGEA 3OWAA 3L1TA 3LGQA 3D9DA 3D9GA 2WBIA 3MPIA 1QDBA 3AFEA 3MKHA 3TTBA 4O5MA 1W07A 2OT4A 2JBSA 2JIFA 1GU6A 3SCEA 2YYGA 1U8VA 2E81A 4L3ZA 1IS2A 3UBRA 2OR0A 3PFDA 4U83A 1FS7A 3RKHA 1RX0A 4KTOA 2Z1QA 4XVXA 2C0UA 4Q4UA 3B96A 3SXQA 4X28A 4HR3A 2DVLA 2IX6A 1BUCA 3AFFA 1T9GA 3R7KA 2VR0A 3BNHA 3BNFA 1JQIA 1UKWA 1WS9A 4W9UA 1FS8A 2R0MA 3D1IA 2YYIA 1EGDA 1IVHA 3HWCA 2ZO5A 2EBAA 3BNJA 4WJYA 1EGCA 3M9VA 2REHA 3OWMA 3S7WA 2RDZA 3D9FA 3D6BA 2DDHA 3FO3A 3OIBA 2RFQA 2JBTA 4M9AA 2R0NA 2YYKA 3GNCA 5K3JA 3TORA 5K3IA 3P4TA 1OAHA 4L3YA 3D9EA 3SF6A 3II9A 3MMOA 2PG0A 3X0XA 1FS9A 4NXLA 3UU9A 4ZXVA 4L1FA 2D29A 4Q17A 5K3HA 3EOMA 4Q5BA 4OO2A 4IRNA 3X0YA 3GM6A 2JBRA 2CX9A 2FONA 3MDEA 2RF7A 3NF4A 4L38A 2IX5A 4KCFA 4L3XA 2J7AA 2UXWA 3MDDA 4N5FA 3GQTA 2YYLA 3LG1A 5K3GA 1R2JA 1UDYA 1SIQA 2E80A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZYJ A;  2YYJ A;  3EON A;  3MXL A;  3SWO A;  2ZAF A;  4RM7 A;  4DOY A;  4G5E A;  4Q1O A;  1SIR A;  2VIG A;  4Q5C A;  4P13 A;  4X28 C;  3FCJ A;  2YYM A;  4JEK A;  2A1T A;  2C12 A;  3MPJ A;  3F29 A;  3BNG A;  4IV6 A;  4Q0T A;  1EGE A;  3OWA A;  3L1T A;  3LGQ A;  3D9D A;  3D9G A;  2WBI A;  3MPI A;  1QDB A;  3AFE A;  3MKH A;  3TTB A;  4O5M A;  1W07 A;  2OT4 A;  2JBS A;  2JIF A;  1GU6 A;  3SCE A;  2YYG A;  1U8V A;  2E81 A;  4L3Z A;  1IS2 A;  3UBR A;  2OR0 A;  3PFD A;  4U83 A;  1FS7 A;  3RKH A;  1RX0 A;  4KTO A;  2Z1Q A;  4XVX A;  2C0U A;  4Q4U A;  3B96 A;  3SXQ A;  4X28 A;  4HR3 A;  2DVL A;  2IX6 A;  1BUC A;  3AFF A;  1T9G A;  3R7K A;  2VR0 A;  3BNH A;  3BNF A;  1JQI A;  1UKW A;  1WS9 A;  4W9U A;  1FS8 A;  2R0M A;  3D1I A;  2YYI A;  1EGD A;  1IVH A;  3HWC A;  2ZO5 A;  2EBA A;  3BNJ A;  4WJY A;  1EGC A;  3M9V A;  2REH A;  3OWM A;  3S7W A;  2RDZ A;  3D9F A;  3D6B A;  2DDH A;  3FO3 A;  3OIB A;  2RFQ A;  2JBT A;  4M9A A;  2R0N A;  2YYK A;  3GNC A;  5K3J A;  3TOR A;  5K3I A;  3P4T A;  1OAH A;  4L3Y A;  3D9E A;  3SF6 A;  3II9 A;  3MMO A;  2PG0 A;  3X0X A;  1FS9 A;  4NXL A;  3UU9 A;  4ZXV A;  4L1F A;  2D29 A;  4Q17 A;  5K3H A;  3EOM A;  4Q5B A;  4OO2 A;  4IRN A;  3X0Y A;  3GM6 A;  2JBR A;  2CX9 A;  2FON A;  3MDE A;  2RF7 A;  3NF4 A;  4L38 A;  2IX5 A;  4KCF A;  4L3X A;  2J7A A;  2UXW A;  3MDD A;  4N5F A;  3GQT A;  2YYL A;  3LG1 A;  5K3G A;  1R2J A;  1UDY A;  1SIQ A;  2E80 A; 
#chains in the Genus database with same CATH topology
 4ZYJ A;  4KSA A;  2YYJ A;  3EON A;  3MXL A;  3SWO A;  1GJV A;  1XFV A;  4E02 A;  2ZAF A;  4RM7 A;  4DOY A;  4G5E A;  4Q1O A;  3VKG A;  2FP2 A;  1SIR A;  4AI6 A;  2VIG A;  4Q5C A;  4P13 A;  4FF3 A;  1LVC A;  2VF1 A;  3Q0A A;  4LQQ B;  5M4P A;  4H7Q A;  4X28 C;  3FCJ A;  3Q24 A;  2YYM A;  4JEK A;  2A1T A;  1X90 A;  2F6L A;  2C12 A;  3MPJ A;  3F29 A;  3BNG A;  2Q8F A;  4IV6 A;  4Q0T A;  1EGE A;  3OWA A;  3L1T A;  2R02 A;  3KML A;  3C46 A;  2GBB A;  3CRL A;  3D9D A;  3LGQ A;  4FZ4 A;  4G97 A;  5B5V A;  4F0X A;  3D9G A;  2WBI A;  3MPI A;  1K90 A;  1QDB A;  2ZKJ A;  3AFE A;  3MKH A;  2BU2 A;  3TTB A;  4O5M A;  1RJ4 A;  4HKS A;  1W07 A;  2OT4 A;  2JBS A;  1Y8N A;  2JIF A;  4FF2 A;  1GU6 A;  3SCE A;  2HJN A;  1U8V A;  1S26 A;  2E81 A;  1IS2 A;  1XFY A;  2YYG A;  4L3Z A;  3UBR A;  2OR0 A;  3PFD A;  1RJ1 A;  2AO2 A;  4MP2 A;  5BRK A;  2AZE A;  4U83 A;  1FS7 A;  3RKH A;  1RX0 A;  4KTO A;  1Y8P A;  2EBH X;  2Z1Q A;  4XVX A;  1XFU A;  1K8T A;  2C0U A;  4Q4U A;  4JIZ A;  3B96 A;  2OJQ A;  2BU5 A;  3SXQ A;  4X28 A;  4E00 A;  1RP3 A;  4HR3 A;  3CE2 A;  2Q8H A;  1K93 A;  2DVL A;  4QIC A;  2IX6 A;  1BUC A;  3N0R A;  3AFF A;  1T9G A;  3C3L A;  3R7K A;  2VR0 A;  3BNH A;  5EZ3 A;  4V25 A;  2XS8 A;  3BNF A;  2BU7 A;  2QR4 A;  3CRK A;  2CJ5 A;  1JQI A;  1UKW A;  4MPC A;  1WS9 A;  4W9U A;  1FS8 A;  2CJ7 A;  5GJW E;  3DJL A;  2R0M A;  3D1I A;  4MP7 A;  5B6B A;  2YYI A;  5M4N A;  4FF1 A;  1EGD A;  1R3B A;  1XFZ A;  5B5W A;  2ZDY A;  1IVH A;  4DZY A;  3D2R A;  2E0A A;  3HWC A;  4FF4 A;  4AKH A;  2ZO5 A;  2EBA A;  3BNJ A;  4LQS B;  2CJ6 A;  1JM6 A;  5M4K A;  4H81 A;  4WJY A;  2PO4 A;  2Q8I A;  3VAD A;  1EGC A;  3U33 A;  5M4M A;  3M9V A;  2LFW A;  2REH A;  5J71 A;  1GKX A;  3OWM A;  2FP1 A;  4JIO A;  3S7W A;  1Y8O A;  4H85 A;  4AKI A;  2RDZ A;  3D9F A;  4HKR A;  2PNR A;  1Y0V A;  5GJV E;  4J1V A;  3TZ0 A;  2BU6 A;  3D6B A;  2DDH A;  4KS9 A;  3FO3 A;  4MPN A;  4KSF A;  3OIB A;  1GKZ A;  2RFQ A;  2R03 A;  2JBT A;  2Q8G A;  4P79 A;  4M9A A;  2R0N A;  2YYK A;  3GNC A;  5K3J A;  3TOR A;  3Q23 A;  3Q22 A;  3VKH A;  5K3I A;  3P4T A;  1OAH A;  2YGW A;  4L3Y A;  3D9E A;  3SF6 A;  1SK6 A;  3II9 A;  2OEX A;  2OEV A;  2R05 A;  1PK0 A;  2ZDX A;  3X29 A;  3C2P A;  5J6A A;  1XFX A;  3MMO A;  2PG0 A;  1SC5 A;  3X0X A;  1FS9 A;  2XS1 A;  4NXL A;  3UU9 A;  4ZXV A;  4L1F A;  5BRM A;  2D29 A;  4AKG A;  2CJ4 A;  4Q17 A;  5K3H A;  3EOM A;  4Q5B A;  4OO2 A;  4IRN A;  2EC5 A;  3X0Y A;  3GM6 A;  2JBR A;  1PI1 A;  2CX9 A;  2FON A;  3MDE A;  1X91 A;  2BU8 A;  2RF7 A;  3NF4 A;  4E01 A;  4L38 A;  3TZ2 A;  1X8Z A;  2IX5 A;  4KCF A;  2EBF X;  2XQR B;  2J7A A;  4L3X A;  2BTZ A;  2UXW A;  4V26 A;  2CJ8 A;  3MDD A;  4N5F A;  4MPE A;  3TZ4 A;  3GQT A;  2YYL A;  3LG1 A;  5K3G A;  1XFW A;  3TZ5 A;  1R2J A;  1UDY A;  1SIQ A;  2E80 A;  1XG2 B; 
#chains in the Genus database with same CATH homology
 4ZYJ A;  2YYJ A;  3EON A;  3MXL A;  3SWO A;  2ZAF A;  4RM7 A;  4DOY A;  4G5E A;  4Q1O A;  1SIR A;  2VIG A;  4Q5C A;  4P13 A;  4X28 C;  3FCJ A;  2YYM A;  4JEK A;  2A1T A;  2C12 A;  3MPJ A;  3F29 A;  3BNG A;  4IV6 A;  4Q0T A;  1EGE A;  3OWA A;  3L1T A;  3LGQ A;  3D9D A;  3D9G A;  2WBI A;  3MPI A;  1QDB A;  3AFE A;  3MKH A;  3TTB A;  4O5M A;  1W07 A;  2OT4 A;  2JBS A;  2JIF A;  1GU6 A;  3SCE A;  2YYG A;  1U8V A;  2E81 A;  4L3Z A;  1IS2 A;  3UBR A;  2OR0 A;  3PFD A;  4U83 A;  1FS7 A;  3RKH A;  1RX0 A;  4KTO A;  2Z1Q A;  4XVX A;  2C0U A;  4Q4U A;  3B96 A;  3SXQ A;  4X28 A;  4HR3 A;  2DVL A;  2IX6 A;  1BUC A;  3AFF A;  1T9G A;  3R7K A;  2VR0 A;  3BNH A;  3BNF A;  1JQI A;  1UKW A;  1WS9 A;  4W9U A;  1FS8 A;  2R0M A;  3D1I A;  2YYI A;  1EGD A;  1IVH A;  3HWC A;  2ZO5 A;  2EBA A;  3BNJ A;  4WJY A;  1EGC A;  3M9V A;  2REH A;  3OWM A;  3S7W A;  2RDZ A;  3D9F A;  3D6B A;  2DDH A;  3FO3 A;  3OIB A;  2RFQ A;  2JBT A;  4M9A A;  2R0N A;  2YYK A;  3GNC A;  5K3J A;  3TOR A;  5K3I A;  3P4T A;  1OAH A;  4L3Y A;  3D9E A;  3SF6 A;  3II9 A;  3MMO A;  2PG0 A;  3X0X A;  1FS9 A;  4NXL A;  3UU9 A;  4ZXV A;  4L1F A;  2D29 A;  4Q17 A;  5K3H A;  3EOM A;  4Q5B A;  4OO2 A;  4IRN A;  3X0Y A;  3GM6 A;  2JBR A;  2CX9 A;  2FON A;  3MDE A;  2RF7 A;  3NF4 A;  4L38 A;  2IX5 A;  4KCF A;  4L3X A;  2J7A A;  2UXW A;  3MDD A;  4N5F A;  3GQT A;  2YYL A;  3LG1 A;  5K3G A;  1R2J A;  1UDY A;  1SIQ A;  2E80 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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