4YCGC

Pro-bone morphogenetic protein 9
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
106
structure length
106
Chain Sequence
GSHCQKTSLRVNFEDIGWDSWIIAPKEYEAYECKGGCFFPLADDVTPTKHAIVQTLVHLKFPTKVGKACCVPTKLSPISVLYKDDMGVPTLKYHYEGMSVAECGCR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Cytokine
molecule keywords Bone Morphogenetic Protein 9 Growth Factor Domain
publication title Structure of bone morphogenetic protein 9 procomplex.
pubmed doi rcsb
source organism Mus musculus
total genus 21
structure length 106
sequence length 106
chains with identical sequence D
ec nomenclature
pdb deposition date 2015-02-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00019 TGF_beta Transforming growth factor beta like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 4ycgC00
1KTZA 2B0UA 1WQ9A 2XV7A 4QCIC 2KD3A 3IJ2A 4FAOA 4YCIC 2X1WA 1KLAA 1SGFB 5HK5E 2GOOA 4MQWA 1M4UA 5HHCA 5BQEB 5E4GA 1VPFA 2PJYA 1HRPA 4MPLA 5F3BC 1BNDB 5BQCA 1TZHV 3S1BV 1S4YB 1PDGA 2C7WA 3EO1C 2VXSA 1AGQA 4EC7A 4LXRJ 4YCGC 1NYSB 4HQXA 1DZ7A 1ZKZA 5HHXA 1BTGA 5HK5A 2FJGV 1B8MA 5BQEA 5AEJA 1REWA 1FL7A 3RJRA 1FLTV 2H62A 3MJKA 1BNDA 1LX5A 1WAQA 3SEKB 1TFGA 2GNNA 3BDYV 2GYRA 3BK3A 2GH0C 2VPFA 1HD4A 3V6BA 1E9JA 1B98A 1KLCA 5BQ8B 4AY9A 2R53A 1XWDA 2R52A 1REUA 4BV4L 1HCNB 5JZ7A 2FJHV 2ARVA 2QJ9A 2QCWA 4X1JA 3KFDA 2XACA 1BJ1V 4ZBNA 2QCQA 1NYUB 3B4VA 4UI1A 4HSAA 5F3HI 5HHVA 4UI2B 4UHZA 4KZNA 4MIDA 1ES7A 1VPPV 2ARPA 5BQBA 3HH2A 2X1XE 3P9WA 5BQ8A 4EFVA 1B8KA 5HHDA 1AOCA 4EAXA 3BMPA 5BQ8D 1QFWB 2ASKA 1BETA 1SG1A 1TGKA 4GLSE 5HI3A 1KATW 1FZVA 1QTYR 3E07A 1M4UL 2BHKA 4QHUC 4EDWV 2QJBA 4HR9A 5FV1V 4KV5A 1MKGA 2P6AA 1TZIV 1QFWA 1TGJA 3BUKA 1LXIA 2H64A 4KXZA 4EDXV 4GLNE 3QB4A 5FV2V 1HCFA 3MJGA 4WPBA 4XPJA 1BMPA 1JPYA 1MKKA 1B8MB 3EVSB 1HCNA 1WQ8A 2IFGE 3FUBB 2GYZA 4LXSJ 1FL7B 1MJVA 2VWEA 4N1DA 1WQ9B 5HI5A 2TGIA 2QR0C 3V2AA 4UI0A 4HQUA 4ZFFC 3S1KV 1CZ8V 2QJAA 5BPUA 3QTKA 4UHYA 4MQWB 1NT3A 1WWWV 5HI4A 1HRPB 1RV6V 2V5EB 3JVFA 4QAFC 4AY9B 1XWDB
chains in the Genus database with same CATH superfamily
1KTZA 2B0UA 1WQ9A 2XV7A 4QCIC 2KD3A 3IJ2A 4FAOA 4YCIC 2X1WA 1KLAA 1SGFB 5HK5E 2GOOA 4MQWA 1M4UA 5HHCA 5BQEB 5E4GA 1VPFA 2PJYA 1HRPA 4MPLA 5F3BC 1BNDB 5BQCA 1TZHV 3S1BV 1S4YB 1PDGA 2C7WA 3EO1C 2VXSA 1AGQA 4EC7A 4LXRJ 4YCGC 1NYSB 4HQXA 1DZ7A 1ZKZA 5HHXA 1BTGA 5HK5A 2FJGV 1B8MA 5BQEA 5AEJA 1REWA 1FL7A 3RJRA 1FLTV 2H62A 3MJKA 1BNDA 1LX5A 1WAQA 3SEKB 1TFGA 2GNNA 3BDYV 2GYRA 3BK3A 2GH0C 2VPFA 1HD4A 3V6BA 1E9JA 1B98A 1KLCA 5BQ8B 4AY9A 2R53A 1XWDA 2R52A 1REUA 4BV4L 1HCNB 5JZ7A 2FJHV 2ARVA 2QJ9A 2QCWA 4X1JA 3KFDA 2XACA 1BJ1V 4ZBNA 2QCQA 1NYUB 3B4VA 4UI1A 4HSAA 5F3HI 5HHVA 4UI2B 4UHZA 4KZNA 4MIDA 1ES7A 1VPPV 2ARPA 5BQBA 3HH2A 2X1XE 3P9WA 5BQ8A 4EFVA 1B8KA 5HHDA 1AOCA 4EAXA 3BMPA 5BQ8D 1QFWB 2ASKA 1BETA 1SG1A 1TGKA 4GLSE 5HI3A 1KATW 1FZVA 1QTYR 3E07A 1M4UL 2BHKA 4QHUC 4EDWV 2QJBA 4HR9A 5FV1V 4KV5A 1MKGA 2P6AA 1TZIV 1QFWA 1TGJA 3BUKA 1LXIA 2H64A 4KXZA 4EDXV 4GLNE 3QB4A 5FV2V 1HCFA 3MJGA 4WPBA 4XPJA 1BMPA 1JPYA 1MKKA 1B8MB 3EVSB 1HCNA 1WQ8A 2IFGE 3FUBB 2GYZA 4LXSJ 1FL7B 1MJVA 2VWEA 4N1DA 1WQ9B 5HI5A 2TGIA 2QR0C 3V2AA 4UI0A 4HQUA 4ZFFC 3S1KV 1CZ8V 2QJAA 5BPUA 3QTKA 4UHYA 4MQWB 1NT3A 1WWWV 5HI4A 1HRPB 1RV6V 2V5EB 3JVFA 4QAFC 4AY9B 1XWDB
chains in the Genus database with same CATH topology
1KTZA 2B0UA 1WQ9A 2XV7A 4QCIC 2KD3A 3IJ2A 4FAOA 4YCIC 2X1WA 1KLAA 1SGFB 5HK5E 2GOOA 4MQWA 1M4UA 5HHCA 5BQEB 5E4GA 1VPFA 2PJYA 1HRPA 4MPLA 5F3BC 1BNDB 5BQCA 1TZHV 3S1BV 1S4YB 1PDGA 2C7WA 3EO1C 2VXSA 1AGQA 4EC7A 4LXRJ 4YCGC 1NYSB 4HQXA 1DZ7A 1ZKZA 5HHXA 1BTGA 5HK5A 2FJGV 1B8MA 5BQEA 5AEJA 1REWA 1FL7A 3RJRA 1FLTV 2H62A 3MJKA 1BNDA 1LX5A 1WAQA 3SEKB 1TFGA 2GNNA 3BDYV 2GYRA 3BK3A 2GH0C 2VPFA 1HD4A 3V6BA 1E9JA 1B98A 1KLCA 5BQ8B 4AY9A 2R53A 1XWDA 2R52A 1REUA 4BV4L 1HCNB 5JZ7A 2FJHV 2ARVA 2QJ9A 2QCWA 4X1JA 3KFDA 2XACA 1BJ1V 4ZBNA 2QCQA 1NYUB 3B4VA 4UI1A 4HSAA 5F3HI 5HHVA 4UI2B 4UHZA 4KZNA 4MIDA 1ES7A 1VPPV 2ARPA 5BQBA 3HH2A 2X1XE 3P9WA 5BQ8A 4EFVA 1B8KA 5HHDA 1AOCA 4EAXA 3BMPA 5BQ8D 1QFWB 2ASKA 1BETA 1SG1A 1TGKA 4GLSE 5HI3A 1KATW 1FZVA 1QTYR 3E07A 1M4UL 2BHKA 4QHUC 4EDWV 2QJBA 4HR9A 5FV1V 4KV5A 1MKGA 2P6AA 1TZIV 1QFWA 1TGJA 3BUKA 1LXIA 2H64A 4KXZA 4EDXV 4GLNE 3QB4A 5FV2V 1HCFA 3MJGA 4WPBA 4XPJA 1BMPA 1JPYA 1MKKA 1B8MB 3EVSB 1HCNA 1WQ8A 2IFGE 3FUBB 2GYZA 4LXSJ 1FL7B 1MJVA 2VWEA 4N1DA 1WQ9B 5HI5A 2TGIA 2QR0C 3V2AA 4UI0A 4HQUA 4ZFFC 3S1KV 1CZ8V 2QJAA 5BPUA 3QTKA 4UHYA 4MQWB 1NT3A 1WWWV 5HI4A 1HRPB 1RV6V 2V5EB 3JVFA 4QAFC 4AY9B 1XWDB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KTZ A;  2B0U A;  1WQ9 A;  2XV7 A;  4QCI C;  2KD3 A;  3IJ2 A;  4FAO A;  4YCI C;  2X1W A;  1KLA A;  1SGF B;  5HK5 E;  2GOO A;  4MQW A;  1M4U A;  5HHC A;  5BQE B;  5E4G A;  1VPF A;  2PJY A;  1HRP A;  4MPL A;  5F3B C;  1BND B;  5BQC A;  1TZH V;  3S1B V;  1S4Y B;  1PDG A;  2C7W A;  3EO1 C;  2VXS A;  1AGQ A;  4EC7 A;  4LXR J;  4YCG C;  1NYS B;  4HQX A;  1DZ7 A;  1ZKZ A;  5HHX A;  1BTG A;  5HK5 A;  2FJG V;  1B8M A;  5BQE A;  5AEJ A;  1REW A;  1FL7 A;  3RJR A;  1FLT V;  2H62 A;  3MJK A;  1BND A;  1LX5 A;  1WAQ A;  3SEK B;  1TFG A;  2GNN A;  3BDY V;  2GYR A;  3BK3 A;  2GH0 C;  2VPF A;  1HD4 A;  3V6B A;  1E9J A;  1B98 A;  1KLC A;  5BQ8 B;  4AY9 A;  2R53 A;  1XWD A;  2R52 A;  1REU A;  4BV4 L;  1HCN B;  5JZ7 A;  2FJH V;  2ARV A;  2QJ9 A;  2QCW A;  4X1J A;  3KFD A;  2XAC A;  1BJ1 V;  4ZBN A;  2QCQ A;  1NYU B;  3B4V A;  4UI1 A;  4HSA A;  5F3H I;  5HHV A;  4UI2 B;  4UHZ A;  4KZN A;  4MID A;  1ES7 A;  1VPP V;  2ARP A;  5BQB A;  3HH2 A;  2X1X E;  3P9W A;  5BQ8 A;  4EFV A;  1B8K A;  5HHD A;  1AOC A;  4EAX A;  3BMP A;  5BQ8 D;  1QFW B;  2ASK A;  1BET A;  1SG1 A;  1TGK A;  4GLS E;  5HI3 A;  1KAT W;  1FZV A;  1QTY R;  3E07 A;  1M4U L;  2BHK A;  4QHU C;  4EDW V;  2QJB A;  4HR9 A;  5FV1 V;  4KV5 A;  1MKG A;  2P6A A;  1TZI V;  1QFW A;  1TGJ A;  3BUK A;  1LXI A;  2H64 A;  4KXZ A;  4EDX V;  4GLN E;  3QB4 A;  5FV2 V;  1HCF A;  3MJG A;  4WPB A;  4XPJ A;  1BMP A;  1JPY A;  1MKK A;  1B8M B;  3EVS B;  1HCN A;  1WQ8 A;  2IFG E;  3FUB B;  2GYZ A;  4LXS J;  1FL7 B;  1MJV A;  2VWE A;  4N1D A;  1WQ9 B;  5HI5 A;  2TGI A;  2QR0 C;  3V2A A;  4UI0 A;  4HQU A;  4ZFF C;  3S1K V;  1CZ8 V;  2QJA A;  5BPU A;  3QTK A;  4UHY A;  4MQW B;  1NT3 A;  1WWW V;  5HI4 A;  1HRP B;  1RV6 V;  2V5E B;  3JVF A;  4QAF C;  4AY9 B;  1XWD B; 
#chains in the Genus database with same CATH topology
 1KTZ A;  2B0U A;  1WQ9 A;  2XV7 A;  4QCI C;  2KD3 A;  3IJ2 A;  4FAO A;  4YCI C;  2X1W A;  1KLA A;  1SGF B;  5HK5 E;  2GOO A;  4MQW A;  1M4U A;  5HHC A;  5BQE B;  5E4G A;  1VPF A;  2PJY A;  1HRP A;  4MPL A;  5F3B C;  1BND B;  5BQC A;  1TZH V;  3S1B V;  1S4Y B;  1PDG A;  2C7W A;  3EO1 C;  2VXS A;  1AGQ A;  4EC7 A;  4LXR J;  4YCG C;  1NYS B;  4HQX A;  1DZ7 A;  1ZKZ A;  5HHX A;  1BTG A;  5HK5 A;  2FJG V;  1B8M A;  5BQE A;  5AEJ A;  1REW A;  1FL7 A;  3RJR A;  1FLT V;  2H62 A;  3MJK A;  1BND A;  1LX5 A;  1WAQ A;  3SEK B;  1TFG A;  2GNN A;  3BDY V;  2GYR A;  3BK3 A;  2GH0 C;  2VPF A;  1HD4 A;  3V6B A;  1E9J A;  1B98 A;  1KLC A;  5BQ8 B;  4AY9 A;  2R53 A;  1XWD A;  2R52 A;  1REU A;  4BV4 L;  1HCN B;  5JZ7 A;  2FJH V;  2ARV A;  2QJ9 A;  2QCW A;  4X1J A;  3KFD A;  2XAC A;  1BJ1 V;  4ZBN A;  2QCQ A;  1NYU B;  3B4V A;  4UI1 A;  4HSA A;  5F3H I;  5HHV A;  4UI2 B;  4UHZ A;  4KZN A;  4MID A;  1ES7 A;  1VPP V;  2ARP A;  5BQB A;  3HH2 A;  2X1X E;  3P9W A;  5BQ8 A;  4EFV A;  1B8K A;  5HHD A;  1AOC A;  4EAX A;  3BMP A;  5BQ8 D;  1QFW B;  2ASK A;  1BET A;  1SG1 A;  1TGK A;  4GLS E;  5HI3 A;  1KAT W;  1FZV A;  1QTY R;  3E07 A;  1M4U L;  2BHK A;  4QHU C;  4EDW V;  2QJB A;  4HR9 A;  5FV1 V;  4KV5 A;  1MKG A;  2P6A A;  1TZI V;  1QFW A;  1TGJ A;  3BUK A;  1LXI A;  2H64 A;  4KXZ A;  4EDX V;  4GLN E;  3QB4 A;  5FV2 V;  1HCF A;  3MJG A;  4WPB A;  4XPJ A;  1BMP A;  1JPY A;  1MKK A;  1B8M B;  3EVS B;  1HCN A;  1WQ8 A;  2IFG E;  3FUB B;  2GYZ A;  4LXS J;  1FL7 B;  1MJV A;  2VWE A;  4N1D A;  1WQ9 B;  5HI5 A;  2TGI A;  2QR0 C;  3V2A A;  4UI0 A;  4HQU A;  4ZFF C;  3S1K V;  1CZ8 V;  2QJA A;  5BPU A;  3QTK A;  4UHY A;  4MQW B;  1NT3 A;  1WWW V;  5HI4 A;  1HRP B;  1RV6 V;  2V5E B;  3JVF A;  4QAF C;  4AY9 B;  1XWD B; 
#chains in the Genus database with same CATH homology
 1KTZ A;  2B0U A;  1WQ9 A;  2XV7 A;  4QCI C;  2KD3 A;  3IJ2 A;  4FAO A;  4YCI C;  2X1W A;  1KLA A;  1SGF B;  5HK5 E;  2GOO A;  4MQW A;  1M4U A;  5HHC A;  5BQE B;  5E4G A;  1VPF A;  2PJY A;  1HRP A;  4MPL A;  5F3B C;  1BND B;  5BQC A;  1TZH V;  3S1B V;  1S4Y B;  1PDG A;  2C7W A;  3EO1 C;  2VXS A;  1AGQ A;  4EC7 A;  4LXR J;  4YCG C;  1NYS B;  4HQX A;  1DZ7 A;  1ZKZ A;  5HHX A;  1BTG A;  5HK5 A;  2FJG V;  1B8M A;  5BQE A;  5AEJ A;  1REW A;  1FL7 A;  3RJR A;  1FLT V;  2H62 A;  3MJK A;  1BND A;  1LX5 A;  1WAQ A;  3SEK B;  1TFG A;  2GNN A;  3BDY V;  2GYR A;  3BK3 A;  2GH0 C;  2VPF A;  1HD4 A;  3V6B A;  1E9J A;  1B98 A;  1KLC A;  5BQ8 B;  4AY9 A;  2R53 A;  1XWD A;  2R52 A;  1REU A;  4BV4 L;  1HCN B;  5JZ7 A;  2FJH V;  2ARV A;  2QJ9 A;  2QCW A;  4X1J A;  3KFD A;  2XAC A;  1BJ1 V;  4ZBN A;  2QCQ A;  1NYU B;  3B4V A;  4UI1 A;  4HSA A;  5F3H I;  5HHV A;  4UI2 B;  4UHZ A;  4KZN A;  4MID A;  1ES7 A;  1VPP V;  2ARP A;  5BQB A;  3HH2 A;  2X1X E;  3P9W A;  5BQ8 A;  4EFV A;  1B8K A;  5HHD A;  1AOC A;  4EAX A;  3BMP A;  5BQ8 D;  1QFW B;  2ASK A;  1BET A;  1SG1 A;  1TGK A;  4GLS E;  5HI3 A;  1KAT W;  1FZV A;  1QTY R;  3E07 A;  1M4U L;  2BHK A;  4QHU C;  4EDW V;  2QJB A;  4HR9 A;  5FV1 V;  4KV5 A;  1MKG A;  2P6A A;  1TZI V;  1QFW A;  1TGJ A;  3BUK A;  1LXI A;  2H64 A;  4KXZ A;  4EDX V;  4GLN E;  3QB4 A;  5FV2 V;  1HCF A;  3MJG A;  4WPB A;  4XPJ A;  1BMP A;  1JPY A;  1MKK A;  1B8M B;  3EVS B;  1HCN A;  1WQ8 A;  2IFG E;  3FUB B;  2GYZ A;  4LXS J;  1FL7 B;  1MJV A;  2VWE A;  4N1D A;  1WQ9 B;  5HI5 A;  2TGI A;  2QR0 C;  3V2A A;  4UI0 A;  4HQU A;  4ZFF C;  3S1K V;  1CZ8 V;  2QJA A;  5BPU A;  3QTK A;  4UHY A;  4MQW B;  1NT3 A;  1WWW V;  5HI4 A;  1HRP B;  1RV6 V;  2V5E B;  3JVF A;  4QAF C;  4AY9 B;  1XWD B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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