4YZ0A

C. bescii family 3 pectate lyase double mutant k108a/e39q in complex with trigalacturonic acid
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
198
structure length
198
Chain Sequence
HHVGTNTGGVLVITDTIIVKSGQTYDGKGIKIIAQGMGDGSQSQNQKPIFKLEKGANLKNVIIGAPGCDGIHCYGDNVVENVVWEDVGEDALTVKSEGVVEVIGGSAKEAADAVFQLNAPCTFKVKNFTATNIGKLVRQNGNTTFKVVIYLEDVTLNNVKSCVAKSDSPVSELWYHNLNVNNCKTLFEFPSQSQIHQY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Pectate lyase
publication title The catalytic mechanism and unique low pH optimum of Caldicellulosiruptor bescii family 3 pectate lyase.
pubmed doi rcsb
source organism Caldicellulosiruptor bescii (strain atcc baa-1888 / dsm 6725 / z-1320)
total genus 85
structure length 198
sequence length 198
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2015-03-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4yz0A00
2NTPA 2X6YA 4U4BA 4Z06A 1JTAA 4YZAA 4XKWA 2BSPA 1K5CA 1WMRA 3B90A 1VBLA 2NTBA 3WWGA 3T9GA 2QY1A 4C2LA 3KRGA 4XORA 2O1DA 2PECA 1RWRA 4W8TA 3VMVA 2NT6A 4XLAA 4XONA 1O8FA 3VSVA 3ZSCA 1DBOA 2X85A 1QCXA 1PE9A 4XLCA 2NZMA 1XG2A 4XNFA 2NSTA 2UVFA 1CZFA 1O88A 1O8GA 2INVA 4NK8A 1IB4A 1KCDA 4AVZA 1AIRA 3GQ7A 5AMVA 1OOCA 4HWVA 1OFLA 4YZQA 4YZXA 2QXZA 2PYHA 1DBGA 4OJPA 4XLEA 1EE6A 2O0WA 3ZPPA 3VMWA 2INUA 3UW0A 1RU4A 4XN0A 1BHEA 1JRGA 4XOPA 2UVEA 1O8DA 2X6WA 4XN3A 2NTQA 2ODLA 2O17A 3LMWA 4XM3A 2VJJA 3GQ9A 2Z8GA 4XLHA 1KCCA 1KTWA 1QJVA 4PMHA 4XKVA 1O8IA 2VBEA 4OJ6A 4U49A 1PXZA 1HG8A 4W8RA 4EW9A 4OZYA 4W8QA 1O8MA 2IQ7A 2PYGA 3VSTA 3B8YA 2O0VA 4OJLA 1OGOX 1O8HA 1PLUA 4XLFA 4URRA 2NT9A 3SUCA 3EQNA 3B4NA 2X3HA 3GQ8A 1IA5A 3GRHA 2QX3A 2EWEA 1O8EA 4NK6A 4XMYA 4I84A 1O8LA 4XL9A 3VSUA 4MR0A 4OJOA 4YEJA 1O8JA 5C1CA 1O8KA 2O04A 1OFMA 1BN8A 5C1EA 2X6XA 1X0CA 1NHCA 4W8SA 4OZZA 4MXNA 3JURA 2NSPA 4Z03A 3GQAA 4OJ5A 2VJIA 4Z05A 2VBMA 1OGMX 1GQ8A 4XOTA 4XR6A 1H80A 1IDJA 1IDKA 3FY3A 3EQOA 4YZ0A 1RMGA 4YELA 4XQFA 2VBKA
chains in the Genus database with same CATH superfamily
2NTPA 2X6YA 4U4BA 4Z06A 1JTAA 4YZAA 1HF2A 4XKWA 2BSPA 1K5CA 1WMRA 1LM1A 3B90A 3P4GA 4YCQA 1VBLA 4YC5A 2NTBA 3PSZA 3SZEA 3N90A 3WWGA 3T9GA 2QY1A 2XT4A 4JRAC 4C2LA 1TSPA 3KRGA 4XORA 2O1DA 4YDTA 2PECA 1RWRA 4W8TA 3VMVA 1TYWA 3DU1X 3JX8A 2NT6A 4XLAA 3SQVA 1EA0A 2VFNA 4XONA 1O8FA 3VSVA 3ZSCA 1DBOA 2X85A 1QCXA 1PE9A 4XLCA 3NB2A 4V02C 2NZMA 1XG2A 4XNFA 2BM6A 2IOUG 2NSTA 2UVFA 2VFQA 1QQ1A 1CZFA 1O88A 1O8GA 2INVA 2O6WA 4NK8A 3SY2A 3RIQA 1IB4A 1KCDA 4AVZA 1AIRA 3GQ7A 2BM5A 5AMVA 1OOCA 4HWVA 1OFLA 3SYJA 1QRBA 1DABA 4YZQA 1KQ5A 4YZXA 2XTYA 2QXZA 2PYHA 1DBGA 4OJPA 4XLEA 1EE6A 2O0WA 1QA3A 3ZPPA 3VMWA 2INUA 3UW0A 1RU4A 4XN0A 1BHEA 4OPWA 3TH0A 1JRGA 4XOPA 2UVEA 3NAWA 1O8DA 3LJYA 2W7ZA 2QZAA 2QYUA 2YUHA 1QA1A 1K8FA 2X6WA 2BM7A 4XN3A 2NTQA 2ODLA 2O17A 3AK5A 3LMWA 4XM3A 2VJJA 2XTWA 2VFPA 3GQ9A 2Z8GA 4XLHA 1KCCA 1KTWA 1QJVA 1TYUA 2XTXA 3N6ZA 4PMHA 1O8IA 2VBEA 4OJ6A 4U49A 1QRCA 1PXZA 2BX6A 4XKVA 3VSUA 1HG8A 4W8RA 2F3LA 4EW9A 1L1IA 3BH7B 4OZYA 4W8QA 1O8MA 1K4ZA 2IQ7A 2G0YA 2PYGA 3B8YA 3VSTA 2J8IA 1WXRA 5DNSA 2O0VA 4OJLA 3PETA 1OGOX 1O8HA 2V5IA 2VFOA 2XC1A 1PLUA 1OFEA 2B0RA 4OM9A 4URRA 2NT9A 4XLFA 1TYXA 2XT2A 3SUCA 2BM4A 3H09A 3EQNA 5JMCB 3B4NA 2X3HA 3GQ8A 1IA5A 3GRHA 1OFDA 2QX3A 1LLWA 2EWEA 1O8EA 4NK6A 1LLZA 4I84A 1O8LA 3BH6B 4XL9A 4XMYA 4MR0A 4OJOA 2VFMA 4YEJA 1O8JA 5C1CA 1O8KA 2O04A 1OFMA 1BN8A 3PSSA 5C1EA 1CLWA 2X6XA 1X0CA 3LYCA 5JLVC 1NHCA 4W8SA 4OZZA 4MXNA 3JURA 4YFOA 1QA2A 2NSPA 4YEIA 4Z03A 3GQAA 4OJ5A 2VJIA 4Z05A 2J8KA 2VBMA 1OGMX 1GQ8A 1TYVA 4XOTA 4XR6A 1H80A 1IDJA 4KH3A 1IDKA 3FY3A 3EQOA 4YZ0A 1EZGA 1RMGA 4YELA 3ML3A 4XQFA 2VBKA
chains in the Genus database with same CATH topology
2NTPA 2X6YA 4U4BA 4Z06A 1JTAA 4YZAA 4XKWA 2BSPA 1K5CA 1WMRA 3B90A 1VBLA 2NTBA 3WWGA 3T9GA 2QY1A 4C2LA 3KRGA 4XORA 2O1DA 2PECA 1RWRA 4W8TA 3VMVA 2NT6A 4XLAA 4XONA 1O8FA 3VSVA 3ZSCA 1DBOA 2X85A 1QCXA 1PE9A 4XLCA 2NZMA 1XG2A 4XNFA 2NSTA 2UVFA 1CZFA 1O88A 1O8GA 2INVA 4NK8A 1IB4A 1KCDA 4AVZA 1AIRA 3GQ7A 5AMVA 1OOCA 4HWVA 1OFLA 4YZQA 4YZXA 2QXZA 2PYHA 1DBGA 4OJPA 4XLEA 1EE6A 2O0WA 3ZPPA 3VMWA 2INUA 3UW0A 1RU4A 4XN0A 1BHEA 1JRGA 4XOPA 2UVEA 1O8DA 2X6WA 4XN3A 2NTQA 2ODLA 2O17A 3LMWA 4XM3A 2VJJA 3GQ9A 2Z8GA 4XLHA 1KCCA 1KTWA 1QJVA 4PMHA 4XKVA 1O8IA 2VBEA 4OJ6A 4U49A 1PXZA 1HG8A 4W8RA 4EW9A 4OZYA 4W8QA 1O8MA 2IQ7A 2PYGA 3VSTA 3B8YA 2O0VA 4OJLA 1OGOX 1O8HA 1PLUA 4XLFA 4URRA 2NT9A 3SUCA 3EQNA 3B4NA 2X3HA 3GQ8A 1IA5A 3GRHA 2QX3A 2EWEA 1O8EA 4NK6A 4XMYA 4I84A 1O8LA 4XL9A 3VSUA 4MR0A 4OJOA 4YEJA 1O8JA 5C1CA 1O8KA 2O04A 1OFMA 1BN8A 5C1EA 2X6XA 1X0CA 1NHCA 4W8SA 4OZZA 4MXNA 3JURA 2NSPA 4Z03A 3GQAA 4OJ5A 2VJIA 4Z05A 2VBMA 1OGMX 1GQ8A 4XOTA 4XR6A 1H80A 1IDJA 1IDKA 3FY3A 3EQOA 4YZ0A 1RMGA 4YELA 4XQFA 2VBKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NTP A;  2X6Y A;  4U4B A;  4Z06 A;  1JTA A;  4YZA A;  4XKW A;  2BSP A;  1K5C A;  1WMR A;  3B90 A;  1VBL A;  2NTB A;  3WWG A;  3T9G A;  2QY1 A;  4C2L A;  3KRG A;  4XOR A;  2O1D A;  2PEC A;  1RWR A;  4W8T A;  3VMV A;  2NT6 A;  4XLA A;  4XON A;  1O8F A;  3VSV A;  3ZSC A;  1DBO A;  2X85 A;  1QCX A;  1PE9 A;  4XLC A;  2NZM A;  1XG2 A;  4XNF A;  2NST A;  2UVF A;  1CZF A;  1O88 A;  1O8G A;  2INV A;  4NK8 A;  1IB4 A;  1KCD A;  4AVZ A;  1AIR A;  3GQ7 A;  5AMV A;  1OOC A;  4HWV A;  1OFL A;  4YZQ A;  4YZX A;  2QXZ A;  2PYH A;  1DBG A;  4OJP A;  4XLE A;  1EE6 A;  2O0W A;  3ZPP A;  3VMW A;  2INU A;  3UW0 A;  1RU4 A;  4XN0 A;  1BHE A;  1JRG A;  4XOP A;  2UVE A;  1O8D A;  2X6W A;  4XN3 A;  2NTQ A;  2ODL A;  2O17 A;  3LMW A;  4XM3 A;  2VJJ A;  3GQ9 A;  2Z8G A;  4XLH A;  1KCC A;  1KTW A;  1QJV A;  4PMH A;  4XKV A;  1O8I A;  2VBE A;  4OJ6 A;  4U49 A;  1PXZ A;  1HG8 A;  4W8R A;  4EW9 A;  4OZY A;  4W8Q A;  1O8M A;  2IQ7 A;  2PYG A;  3VST A;  3B8Y A;  2O0V A;  4OJL A;  1OGO X;  1O8H A;  1PLU A;  4XLF A;  4URR A;  2NT9 A;  3SUC A;  3EQN A;  3B4N A;  2X3H A;  3GQ8 A;  1IA5 A;  3GRH A;  2QX3 A;  2EWE A;  1O8E A;  4NK6 A;  4XMY A;  4I84 A;  1O8L A;  4XL9 A;  3VSU A;  4MR0 A;  4OJO A;  4YEJ A;  1O8J A;  5C1C A;  1O8K A;  2O04 A;  1OFM A;  1BN8 A;  5C1E A;  2X6X A;  1X0C A;  1NHC A;  4W8S A;  4OZZ A;  4MXN A;  3JUR A;  2NSP A;  4Z03 A;  3GQA A;  4OJ5 A;  2VJI A;  4Z05 A;  2VBM A;  1OGM X;  1GQ8 A;  4XOT A;  4XR6 A;  1H80 A;  1IDJ A;  1IDK A;  3FY3 A;  3EQO A;  4YZ0 A;  1RMG A;  4YEL A;  4XQF A;  2VBK A; 
#chains in the Genus database with same CATH topology
 2NTP A;  2X6Y A;  4U4B A;  4Z06 A;  1JTA A;  4YZA A;  1HF2 A;  4XKW A;  2BSP A;  1K5C A;  1WMR A;  1LM1 A;  3B90 A;  3P4G A;  4YCQ A;  1VBL A;  4YC5 A;  2NTB A;  3PSZ A;  3SZE A;  3N90 A;  3WWG A;  3T9G A;  2QY1 A;  2XT4 A;  4JRA C;  4C2L A;  1TSP A;  3KRG A;  4XOR A;  2O1D A;  4YDT A;  2PEC A;  1RWR A;  4W8T A;  3VMV A;  1TYW A;  3DU1 X;  3JX8 A;  2NT6 A;  4XLA A;  3SQV A;  1EA0 A;  2VFN A;  4XON A;  1O8F A;  3VSV A;  3ZSC A;  1DBO A;  2X85 A;  1QCX A;  1PE9 A;  4XLC A;  3NB2 A;  4V02 C;  2NZM A;  1XG2 A;  4XNF A;  2BM6 A;  2IOU G;  2NST A;  2UVF A;  2VFQ A;  1QQ1 A;  1CZF A;  1O88 A;  1O8G A;  2INV A;  2O6W A;  4NK8 A;  3SY2 A;  3RIQ A;  1IB4 A;  1KCD A;  4AVZ A;  1AIR A;  3GQ7 A;  2BM5 A;  5AMV A;  1OOC A;  4HWV A;  1OFL A;  3SYJ A;  1QRB A;  1DAB A;  4YZQ A;  1KQ5 A;  4YZX A;  2XTY A;  2QXZ A;  2PYH A;  1DBG A;  4OJP A;  4XLE A;  1EE6 A;  2O0W A;  1QA3 A;  3ZPP A;  3VMW A;  2INU A;  3UW0 A;  1RU4 A;  4XN0 A;  1BHE A;  4OPW A;  3TH0 A;  1JRG A;  4XOP A;  2UVE A;  3NAW A;  1O8D A;  3LJY A;  2W7Z A;  2QZA A;  2QYU A;  2YUH A;  1QA1 A;  1K8F A;  2X6W A;  2BM7 A;  4XN3 A;  2NTQ A;  2ODL A;  2O17 A;  3AK5 A;  3LMW A;  4XM3 A;  2VJJ A;  2XTW A;  2VFP A;  3GQ9 A;  2Z8G A;  4XLH A;  1KCC A;  1KTW A;  1QJV A;  1TYU A;  2XTX A;  3N6Z A;  4PMH A;  1O8I A;  2VBE A;  4OJ6 A;  4U49 A;  1QRC A;  1PXZ A;  2BX6 A;  4XKV A;  3VSU A;  1HG8 A;  4W8R A;  2F3L A;  4EW9 A;  1L1I A;  3BH7 B;  4OZY A;  4W8Q A;  1O8M A;  1K4Z A;  2IQ7 A;  2G0Y A;  2PYG A;  3B8Y A;  3VST A;  2J8I A;  1WXR A;  5DNS A;  2O0V A;  4OJL A;  3PET A;  1OGO X;  1O8H A;  2V5I A;  2VFO A;  2XC1 A;  1PLU A;  1OFE A;  2B0R A;  4OM9 A;  4URR A;  2NT9 A;  4XLF A;  1TYX A;  2XT2 A;  3SUC A;  2BM4 A;  3H09 A;  3EQN A;  5JMC B;  3B4N A;  2X3H A;  3GQ8 A;  1IA5 A;  3GRH A;  1OFD A;  2QX3 A;  1LLW A;  2EWE A;  1O8E A;  4NK6 A;  1LLZ A;  4I84 A;  1O8L A;  3BH6 B;  4XL9 A;  4XMY A;  4MR0 A;  4OJO A;  2VFM A;  4YEJ A;  1O8J A;  5C1C A;  1O8K A;  2O04 A;  1OFM A;  1BN8 A;  3PSS A;  5C1E A;  1CLW A;  2X6X A;  1X0C A;  3LYC A;  5JLV C;  1NHC A;  4W8S A;  4OZZ A;  4MXN A;  3JUR A;  4YFO A;  1QA2 A;  2NSP A;  4YEI A;  4Z03 A;  3GQA A;  4OJ5 A;  2VJI A;  4Z05 A;  2J8K A;  2VBM A;  1OGM X;  1GQ8 A;  1TYV A;  4XOT A;  4XR6 A;  1H80 A;  1IDJ A;  4KH3 A;  1IDK A;  3FY3 A;  3EQO A;  4YZ0 A;  1EZG A;  1RMG A;  4YEL A;  3ML3 A;  4XQF A;  2VBK A; 
#chains in the Genus database with same CATH homology
 2NTP A;  2X6Y A;  4U4B A;  4Z06 A;  1JTA A;  4YZA A;  4XKW A;  2BSP A;  1K5C A;  1WMR A;  3B90 A;  1VBL A;  2NTB A;  3WWG A;  3T9G A;  2QY1 A;  4C2L A;  3KRG A;  4XOR A;  2O1D A;  2PEC A;  1RWR A;  4W8T A;  3VMV A;  2NT6 A;  4XLA A;  4XON A;  1O8F A;  3VSV A;  3ZSC A;  1DBO A;  2X85 A;  1QCX A;  1PE9 A;  4XLC A;  2NZM A;  1XG2 A;  4XNF A;  2NST A;  2UVF A;  1CZF A;  1O88 A;  1O8G A;  2INV A;  4NK8 A;  1IB4 A;  1KCD A;  4AVZ A;  1AIR A;  3GQ7 A;  5AMV A;  1OOC A;  4HWV A;  1OFL A;  4YZQ A;  4YZX A;  2QXZ A;  2PYH A;  1DBG A;  4OJP A;  4XLE A;  1EE6 A;  2O0W A;  3ZPP A;  3VMW A;  2INU A;  3UW0 A;  1RU4 A;  4XN0 A;  1BHE A;  1JRG A;  4XOP A;  2UVE A;  1O8D A;  2X6W A;  4XN3 A;  2NTQ A;  2ODL A;  2O17 A;  3LMW A;  4XM3 A;  2VJJ A;  3GQ9 A;  2Z8G A;  4XLH A;  1KCC A;  1KTW A;  1QJV A;  4PMH A;  4XKV A;  1O8I A;  2VBE A;  4OJ6 A;  4U49 A;  1PXZ A;  1HG8 A;  4W8R A;  4EW9 A;  4OZY A;  4W8Q A;  1O8M A;  2IQ7 A;  2PYG A;  3VST A;  3B8Y A;  2O0V A;  4OJL A;  1OGO X;  1O8H A;  1PLU A;  4XLF A;  4URR A;  2NT9 A;  3SUC A;  3EQN A;  3B4N A;  2X3H A;  3GQ8 A;  1IA5 A;  3GRH A;  2QX3 A;  2EWE A;  1O8E A;  4NK6 A;  4XMY A;  4I84 A;  1O8L A;  4XL9 A;  3VSU A;  4MR0 A;  4OJO A;  4YEJ A;  1O8J A;  5C1C A;  1O8K A;  2O04 A;  1OFM A;  1BN8 A;  5C1E A;  2X6X A;  1X0C A;  1NHC A;  4W8S A;  4OZZ A;  4MXN A;  3JUR A;  2NSP A;  4Z03 A;  3GQA A;  4OJ5 A;  2VJI A;  4Z05 A;  2VBM A;  1OGM X;  1GQ8 A;  4XOT A;  4XR6 A;  1H80 A;  1IDJ A;  1IDK A;  3FY3 A;  3EQO A;  4YZ0 A;  1RMG A;  4YEL A;  4XQF A;  2VBK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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