The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
66
|
sequence length |
240
|
structure length |
240
|
Chain Sequence |
TDPVKAGYDLAVRMDQVDTSQDSYSEAVMSINRGGKVLTRSFKTYSKHFGKDGKDEYSLIVFDRPADVNGTKYLVWSYRGLEQDDDMWVYLPAESLVRRISGSSKFASFMRSDLSNEDIQNLDDVDEYDYLLQGEENVDGIDCYILERTPKKGKETQYSRQVQWVRKDTLLRLRADYYDKKDRLVKKLFFSRQEKIDGIWTVTQMRVERPREGSFTVIDWSNLRYDVGLSDAYFEHSALQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Structural biology, unknown function
|
| molecule keywords |
Uncharacterized protein
|
| publication title |
Crystal structure of a DUF1329 family protein (DESPIG_00262) from Desulfovibrio piger ATCC 29098 at 1.75 A resolution
rcsb |
| source organism |
Desulfovibrio piger atcc 29098
|
| total genus |
66
|
| structure length |
240
|
| sequence length |
240
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2015-04-01 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF17131 | LolA_like | Outer membrane lipoprotein-sorting protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Clam | outer membrane lipoprotein receptor (LolB), chain A | Lipoprotein localisation LolA/LolB/LppX |
#chains in the Genus database with same CATH superfamily 2YZY A; 1IWL A; 2W7Q A; 3WJT A; 3BUU A; 2ZPD A; 4Z48 A; 3WJV A; 1UA8 A; 2ZPC A; 4KI3 A; 1IWM A; 3KSN A; 3WJU A; 2V43 A; 2P4B A; 3M4W A; 1IWN A; 4MXT A; 3BK5 A; 2V42 A; #chains in the Genus database with same CATH topology 2ZF3 A; 2YZY A; 1IWL A; 2W7Q A; 3WJT A; 3BUU A; 2ZPD A; 4Z48 A; 3WJV A; 1UA8 A; 2ZPC A; 4KI3 A; 3MHA A; 4QA8 A; 1IWM A; 2BYO A; 3KSN A; 3WJU A; 3MH8 A; 2V43 A; 2P4B A; 3M4W A; 2ZF4 A; 3MH9 A; 1IWN A; 4EG9 A; 3BMZ A; 4MXT A; 3BK5 A; 4EGD A; 2V42 A; 4ZRA A; #chains in the Genus database with same CATH homology 2YZY A; 1IWL A; 2W7Q A; 3WJT A; 3BUU A; 2ZPD A; 4Z48 A; 3WJV A; 1UA8 A; 2ZPC A; 4KI3 A; 1IWM A; 3KSN A; 3WJU A; 2V43 A; 2P4B A; 3M4W A; 1IWN A; 4MXT A; 3BK5 A; 2V42 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
