4ZNDA

2.55 angstrom resolution structure of 3-phosphoshikimate 1-carboxyvinyltransferase (aroa) from coxiella burnetii in complex with shikimate-3-phosphate, phosphate, and potassium
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
436
structure length
436
Chain Sequence
AMDYQTIPSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSALQQMGASIQVIEDENILVVEGVGMTGLQAPPEALDCGNSGTAIRLLSGLLAGQPFNTVLTGDSSLQRRPMKRIIDPLTLMGAKIDSTGNVPPLKIYGNPRLTGIHYQLPMASAQVKSCLLLAGLYARGKTCITEPAPSRDHTERLLKHFHYTLQKDKQSICVSGGGKLKANDISIPGDISSAAFFIVAATITPGSAIRLCRVGVNPTRLGVINLLKMMGADIEVTHYTEKNEEPTADITVRHARLKGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVLRDAAELRVKETDRIAAMVDGLQKLGIAAESLPDGVIIQGGTLEGGEVNSYDDHRIAMAFAVAGTLAKGPVRIRNCDNVKTSFPNFVELANEVGMNVKGVRGR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords 3-phosphoshikimate 1-carboxyvinyltransferase
publication title 2.55 Angstrom resolution structure of 3-phosphoshikimate 1-carboxyvinyltransferase (AroA) from Coxiella burnetii in complex with shikimate-3-phosphate, phosphate, and potassium
rcsb
source organism Coxiella burnetii (strain rsa 493 / nine mile phase i)
total genus 148
structure length 436
sequence length 436
ec nomenclature ec 2.5.1.19: 3-phosphoshikimate 1-carboxyvinyltransferase.
pdb deposition date 2015-05-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 4zndA02
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 4zndA01
2QFQA 4E7FA 3KR6A 4ZNDA 4N3PA 1Q3GA 1NAWA 3FK0A 1G6SA 3TR1A 3NVSA 2O0BA 1DLGA 2GG6A 3TI2A 5BS5A 2O0ZA 3R38A 3SLHA 4E7DA 1G6TA 3KQJA 1P88A 4GFPA 3FJZA 3SWIA 5U4HA 2GGAA 4E7BA 4R7UA 4EGRA 2O0DA 3SWAA 3SWQA 2PQ9A 1Q36A 1YBGA 2O15A 3FJXA 3KQAA 3FK1A 5BUFA 2YVWA 2O0XA 1EJCA 4E7EA 2RL2A 3ISSA 3SU9A 1RF4A 1MI4A 2BJBA 1X8RA 1RYWA 3RMTA 3SG1A 4EIIA 3SWEA 1X8TA 4FQDA 4E7GA 3VCYA 3SWDA 1EJDA 3UPKA 2Z2CA 2O0EA 3SWGA 3ZH4A 3ZH3A 3V5VA 2GG4A 2QFTA 3V4TA 2AA9A 2PQBA 1P89A 2QFSA 1RF6A 2RL1A 1EYNA 1A2NA 2PQCA 2GGDA 2AAYA 2PQDA 3SPBA 4E7CA 1RF5A 3LTHA 5BQ2A 2QFUA 1UAEA 3ROIA
chains in the Genus database with same CATH superfamily
2QFQA 4E7FA 3KR6A 3TUTA 4ZNDA 4N3PA 1Q3GA 1NAWA 3FK0A 3KGDA 1G6SA 3TR1A 3NVSA 2O0BA 1DLGA 2GG6A 3TI2A 4O89A 5BS5A 2O0ZA 3R38A 3SLHA 4E7DA 1G6TA 3KQJA 1P88A 4GFPA 3FJZA 3SWIA 1QMIA 5U4HA 2GGAA 4E7BA 4R7UA 4EGRA 2O0DA 3TW3A 3SWAA 3SWQA 2PQ9A 1Q36A 1YBGA 2O15A 3FJXA 3KQAA 3FK1A 5BUFA 4CLQA 2YVWA 2O0XA 1EJCA 4E7EA 2RL2A 3ISSA 3SU9A 1RF4A 1MI4A 2BJBA 1X8RA 1RYWA 3RMTA 3SG1A 4EIIA 3SWEA 1X8TA 4FQDA 4E7GA 3VCYA 3SWDA 1EJDA 3UPKA 2Z2CA 2O0EA 3SWGA 3ZH4A 3ZH3A 3V5VA 2GG4A 2QFTA 3V4TA 2AA9A 3TUXA 2PQBA 1P89A 2QFSA 3TV1A 4O8JA 1QMHA 1RF6A 2RL1A 1EYNA 1A2NA 2PQCA 2GGDA 2AAYA 2PQDA 3SPBA 4E7CA 3PQVA 1RF5A 3LTHA 5BQ2A 2QFUA 1UAEA 3ROIA
chains in the Genus database with same CATH topology
2QFQA 4E7FA 3KR6A 4ZNDA 4N3PA 1Q3GA 1NAWA 3FK0A 1G6SA 3TR1A 3NVSA 2O0BA 1DLGA 2GG6A 3TI2A 5BS5A 2O0ZA 3R38A 3SLHA 4E7DA 1G6TA 3KQJA 1P88A 4GFPA 3FJZA 3SWIA 5U4HA 2GGAA 4E7BA 4R7UA 4EGRA 2O0DA 3SWAA 3SWQA 2PQ9A 1Q36A 1YBGA 2O15A 3FJXA 3KQAA 3FK1A 5BUFA 2YVWA 2O0XA 1EJCA 4E7EA 2RL2A 3ISSA 3SU9A 1RF4A 1MI4A 2BJBA 1X8RA 1RYWA 3RMTA 3SG1A 4EIIA 3SWEA 1X8TA 4FQDA 4E7GA 3VCYA 3SWDA 1EJDA 3UPKA 2Z2CA 2O0EA 3SWGA 3ZH4A 3ZH3A 3V5VA 2GG4A 2QFTA 3V4TA 2AA9A 2PQBA 1P89A 2QFSA 1RF6A 2RL1A 1EYNA 1A2NA 2PQCA 2GGDA 2AAYA 2PQDA 3SPBA 4E7CA 1RF5A 3LTHA 5BQ2A 2QFUA 1UAEA 3ROIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QFQ A;  4E7F A;  3KR6 A;  4ZND A;  4N3P A;  1Q3G A;  1NAW A;  3FK0 A;  1G6S A;  3TR1 A;  3NVS A;  2O0B A;  1DLG A;  2GG6 A;  3TI2 A;  5BS5 A;  2O0Z A;  3R38 A;  3SLH A;  4E7D A;  1G6T A;  3KQJ A;  1P88 A;  4GFP A;  3FJZ A;  3SWI A;  5U4H A;  2GGA A;  4E7B A;  4R7U A;  4EGR A;  2O0D A;  3SWA A;  3SWQ A;  2PQ9 A;  1Q36 A;  1YBG A;  2O15 A;  3FJX A;  3KQA A;  3FK1 A;  5BUF A;  2YVW A;  2O0X A;  1EJC A;  4E7E A;  2RL2 A;  3ISS A;  3SU9 A;  1RF4 A;  1MI4 A;  2BJB A;  1X8R A;  1RYW A;  3RMT A;  3SG1 A;  4EII A;  3SWE A;  1X8T A;  4FQD A;  4E7G A;  3VCY A;  3SWD A;  1EJD A;  3UPK A;  2Z2C A;  2O0E A;  3SWG A;  3ZH4 A;  3ZH3 A;  3V5V A;  2GG4 A;  2QFT A;  3V4T A;  2AA9 A;  2PQB A;  1P89 A;  2QFS A;  1RF6 A;  2RL1 A;  1EYN A;  1A2N A;  2PQC A;  2GGD A;  2AAY A;  2PQD A;  3SPB A;  4E7C A;  1RF5 A;  3LTH A;  5BQ2 A;  2QFU A;  1UAE A;  3ROI A; 
#chains in the Genus database with same CATH topology
 2QFQ A;  4E7F A;  3KR6 A;  3TUT A;  4ZND A;  4N3P A;  1Q3G A;  1NAW A;  3FK0 A;  3KGD A;  1G6S A;  3TR1 A;  3NVS A;  2O0B A;  1DLG A;  2GG6 A;  3TI2 A;  4O89 A;  5BS5 A;  2O0Z A;  3R38 A;  3SLH A;  4E7D A;  1G6T A;  3KQJ A;  1P88 A;  4GFP A;  3FJZ A;  3SWI A;  1QMI A;  5U4H A;  2GGA A;  4E7B A;  4R7U A;  4EGR A;  2O0D A;  3TW3 A;  3SWA A;  3SWQ A;  2PQ9 A;  1Q36 A;  1YBG A;  2O15 A;  3FJX A;  3KQA A;  3FK1 A;  5BUF A;  4CLQ A;  2YVW A;  2O0X A;  1EJC A;  4E7E A;  2RL2 A;  3ISS A;  3SU9 A;  1RF4 A;  1MI4 A;  2BJB A;  1X8R A;  1RYW A;  3RMT A;  3SG1 A;  4EII A;  3SWE A;  1X8T A;  4FQD A;  4E7G A;  3VCY A;  3SWD A;  1EJD A;  3UPK A;  2Z2C A;  2O0E A;  3SWG A;  3ZH4 A;  3ZH3 A;  3V5V A;  2GG4 A;  2QFT A;  3V4T A;  2AA9 A;  3TUX A;  2PQB A;  1P89 A;  2QFS A;  3TV1 A;  4O8J A;  1QMH A;  1RF6 A;  2RL1 A;  1EYN A;  1A2N A;  2PQC A;  2GGD A;  2AAY A;  2PQD A;  3SPB A;  4E7C A;  3PQV A;  1RF5 A;  3LTH A;  5BQ2 A;  2QFU A;  1UAE A;  3ROI A; 
#chains in the Genus database with same CATH homology
 2QFQ A;  4E7F A;  3KR6 A;  4ZND A;  4N3P A;  1Q3G A;  1NAW A;  3FK0 A;  1G6S A;  3TR1 A;  3NVS A;  2O0B A;  1DLG A;  2GG6 A;  3TI2 A;  5BS5 A;  2O0Z A;  3R38 A;  3SLH A;  4E7D A;  1G6T A;  3KQJ A;  1P88 A;  4GFP A;  3FJZ A;  3SWI A;  5U4H A;  2GGA A;  4E7B A;  4R7U A;  4EGR A;  2O0D A;  3SWA A;  3SWQ A;  2PQ9 A;  1Q36 A;  1YBG A;  2O15 A;  3FJX A;  3KQA A;  3FK1 A;  5BUF A;  2YVW A;  2O0X A;  1EJC A;  4E7E A;  2RL2 A;  3ISS A;  3SU9 A;  1RF4 A;  1MI4 A;  2BJB A;  1X8R A;  1RYW A;  3RMT A;  3SG1 A;  4EII A;  3SWE A;  1X8T A;  4FQD A;  4E7G A;  3VCY A;  3SWD A;  1EJD A;  3UPK A;  2Z2C A;  2O0E A;  3SWG A;  3ZH4 A;  3ZH3 A;  3V5V A;  2GG4 A;  2QFT A;  3V4T A;  2AA9 A;  2PQB A;  1P89 A;  2QFS A;  1RF6 A;  2RL1 A;  1EYN A;  1A2N A;  2PQC A;  2GGD A;  2AAY A;  2PQD A;  3SPB A;  4E7C A;  1RF5 A;  3LTH A;  5BQ2 A;  2QFU A;  1UAE A;  3ROI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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