4ZNGA

X-ray crystallography of recombinant lactococcus lactis prolidase
Total Genus 117
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
117
sequence length
362
structure length
362
Chain Sequence
MSKIERISAFLNDKEVDMTFITNPTTLNYLTGLAIDPHERIAGLMIFRDSTPMLFTPALEVEKAKEHTSGLDIFGYEDSQNPWEVVKNHVKSDVKSIAVEFSDIPLAKTEGLKAQFGDINFVNLTPLIERMRLIKSADEIEKMKVAGDFADKCFEIGFATAAERNGVTESDIVAKIEYEMKRMGVPQMSFDTLVLSGARAANPHGAPENVEIQENKLLLFDLGVMSGGYASDATRTIAIGQPNDFDAEIHKIVKEAQQAAMDFIKPGVTAHEVDAVARDLITKAGYGEYFNHRLGHGIGMDVHEYPSIVAGNDLVIQEGMCFSNEPGIYIPGKVGVRIEDCLYVTENGCESFTHTDHDLLIF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Prolidase
publication title X-ray crystallography of recombinant Lactococcus lactis prolidase
rcsb
source organism Lactococcus lactis
total genus 117
structure length 362
sequence length 362
chains with identical sequence B, C
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2015-05-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 4zngA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4zngA02
1YW8A 5FCFA 2GG3A 5JHUA 4A6VA 1KQ0A 3FM3A 3FMRA 1YVMA 4RGZ1 4S2TP 3IL0A 2EA2A 4U69A 3PKCA 4U6CA 3CB5A 4U1BA 1QXZA 3Q6DA 2GG5A 4U6WA 1B6AA 4IKRA 4FLKA 2OAZA 2GA2A 2GZ5A 2GGCA 4IU6A 2EVOA 5FCHA 1YJ3A 2P98A 2B3HA 4PV4A 1R5HA 1QXYA 3I7MA 4ZWUA 2EVMA 3PKAA 3TB5A 4FO8A 3IU7A 4KM3A 2NQ6A 4RZZA 1R58A 4ZNGA 4EGEA 3O5VA 2HOWA 1XNZA 3MATA 1A16A 1WL6A 2B3KA 2Q92A 1MATA 3OOOA 2NQ7A 2GU4A 2BHDA 1C23A 2V3ZA 1B59A 4IDYA 4Z7MA 2ADUA 2DFIA 4S00A 1WY2A 5CIKA 4IKTA 4RZYA 2G6PA 2BHAA 3IU8A 5E2CA 4JUQA 1PV9A 2Q94A 2GG8A 2Q96A 4FLLA 5CDLA 4MATA 3BITA 1C21A 2BWVA 2Q8KA 2OKNA 2IW2A 2BWYA 2BWWA 1WL9A 1WN1A 3FMQA 4U6JA 1CHMA 1R5GA 2Q93A 4FLIA 4FO7A 3TAVA 3PEBA 1M35A 4S01A 1O0XA 4FLJA 1BN5A 4R60A 3MX6A 1WLRA 5CDVA 3IU9A 2GTXA 4IKSA 5CNXA 3CB6A 2BWTA 3IG4A 5D6FA 1C24A 3QOCA 3MR1A 2BB7A 3RVAA 3L7GA 2EVCA 3PN9A 2GG2A 1QXWA 3PKBA 3L24A 2P99A 1W2MA 2P9AA 4S2RP 5CDEA 1XGOA 1YW9A 4U6ZA 4ZWOA 5CLSA 4U75A 4U76A 4U70A 4QR8A 4FKCA 2V3YA 5CE6A 4HXXA 3D27A 2ZSGA 4B28A 2EA4A 2GG9A 4IF7A 2BH3A 4OOKA 1W7VA 1BOAA 1WBQA 1KP0A 2GU7A 2V6CA 2GU5A 2BWSA 3BIPA 2V3XA 5JI6A 1QZYA 2BWUA 2GG7A 2B3LA 4IKUA 2BN7A 1YW7A 2BHCA 1Y1NA 4IECA 1XGSA 1XGMA 2GGBA 2GU6A 5JFRA 1C22A 5E5BA 2GG0A 3PKEA 1WKMA 3RORA 4U6EA 4U73A 4A6WA 4ZWPA 3BIQA 4PNCA 1N51A 4FUKA 4U71A 2BWXA 4IPAA 3OVKA 2BHBA 1JAWA 1XGNA 1C27A 2MATA 3CTZA 1KQ9A 5D6EA 3S6BA 3PKDA 2Q95A
chains in the Genus database with same CATH superfamily
1YW8A 5FCFA 2GG3A 5JHUA 4A6VA 1KQ0A 3FM3A 3FMRA 1YVMA 4RGZ1 4S2TP 3IL0A 2EA2A 4U69A 3PKCA 4U6CA 3CB5A 4U1BA 1QXZA 3Q6DA 2GG5A 4U6WA 1B6AA 4IKRA 4FLKA 2OAZA 2GA2A 2GZ5A 2GGCA 4IU6A 2EVOA 5FCHA 1YJ3A 2P98A 2B3HA 4PV4A 1R5HA 1QXYA 3I7MA 4ZWUA 2EVMA 3PKAA 3TB5A 4FO8A 3IU7A 4KM3A 2NQ6A 4RZZA 1R58A 4ZNGA 4EGEA 3O5VA 2HOWA 1XNZA 3MATA 1A16A 1WL6A 2B3KA 2Q92A 1MATA 3OOOA 2NQ7A 2GU4A 2BHDA 1C23A 2V3ZA 1B59A 4IDYA 4Z7MA 2ADUA 2DFIA 4S00A 1WY2A 5CIKA 4IKTA 4RZYA 2G6PA 2BHAA 3IU8A 5E2CA 4JUQA 1PV9A 2Q94A 2GG8A 2Q96A 4FLLA 5CDLA 4MATA 3BITA 1C21A 2BWVA 2Q8KA 2OKNA 2IW2A 2BWYA 2BWWA 1WL9A 1WN1A 3FMQA 4U6JA 1CHMA 1R5GA 2Q93A 4FLIA 4FO7A 3TAVA 3PEBA 1M35A 4S01A 1O0XA 4FLJA 1BN5A 4R60A 3MX6A 1WLRA 5CDVA 3IU9A 2GTXA 4IKSA 5CNXA 3CB6A 2BWTA 3IG4A 5D6FA 1C24A 3QOCA 3MR1A 2BB7A 3RVAA 3L7GA 2EVCA 3PN9A 2GG2A 1QXWA 3PKBA 3L24A 2P99A 1W2MA 2P9AA 4S2RP 5CDEA 1XGOA 1YW9A 4U6ZA 4ZWOA 5CLSA 4U75A 4U76A 4U70A 4QR8A 4FKCA 2V3YA 5CE6A 4HXXA 3D27A 2ZSGA 4B28A 2EA4A 2GG9A 4IF7A 2BH3A 4OOKA 1W7VA 1BOAA 1WBQA 1KP0A 2GU7A 2V6CA 2GU5A 2BWSA 3BIPA 2V3XA 5JI6A 1QZYA 2BWUA 2GG7A 2B3LA 4IKUA 2BN7A 1YW7A 2BHCA 1Y1NA 4IECA 1XGSA 1XGMA 2GGBA 2GU6A 5JFRA 1C22A 5E5BA 2GG0A 3PKEA 1WKMA 3RORA 4U6EA 4U73A 4A6WA 4ZWPA 3BIQA 4PNCA 1N51A 4FUKA 4U71A 2BWXA 4IPAA 3OVKA 2BHBA 1JAWA 1XGNA 1C27A 2MATA 3CTZA 1KQ9A 5D6EA 3S6BA 3PKDA 2Q95A
chains in the Genus database with same CATH topology
1YW8A 5FCFA 2GG3A 5JHUA 4A6VA 1KQ0A 3FM3A 3FMRA 1YVMA 4RGZ1 4S2TP 3IL0A 2EA2A 4U69A 3PKCA 4U6CA 3CB5A 4U1BA 1QXZA 3Q6DA 2GG5A 4U6WA 1B6AA 4IKRA 4FLKA 2OAZA 2GA2A 2GZ5A 2GGCA 4IU6A 2EVOA 5FCHA 1YJ3A 2P98A 2B3HA 4PV4A 1R5HA 1QXYA 3I7MA 4ZWUA 2EVMA 3PKAA 3TB5A 4FO8A 3IU7A 4KM3A 2NQ6A 4RZZA 1R58A 4ZNGA 4EGEA 3O5VA 2HOWA 1XNZA 3MATA 1A16A 1WL6A 2B3KA 2Q92A 1MATA 3OOOA 2NQ7A 2GU4A 2BHDA 1C23A 2V3ZA 1B59A 4IDYA 4Z7MA 2ADUA 2DFIA 4S00A 1WY2A 5CIKA 4IKTA 4RZYA 2G6PA 2BHAA 3IU8A 5E2CA 4JUQA 1PV9A 2Q94A 2GG8A 2Q96A 4FLLA 5CDLA 4MATA 3BITA 1C21A 2BWVA 2Q8KA 2OKNA 2IW2A 2BWYA 2BWWA 1WL9A 1WN1A 3FMQA 4U6JA 1CHMA 1R5GA 2Q93A 4FLIA 4FO7A 3TAVA 3PEBA 1M35A 4S01A 1O0XA 4FLJA 1BN5A 4R60A 3MX6A 1WLRA 5CDVA 3IU9A 2GTXA 4IKSA 5CNXA 3CB6A 2BWTA 3IG4A 5D6FA 1C24A 3QOCA 3MR1A 2BB7A 3RVAA 3L7GA 2EVCA 3PN9A 2GG2A 1QXWA 3PKBA 3L24A 2P99A 1W2MA 2P9AA 4S2RP 5CDEA 1XGOA 1YW9A 4U6ZA 4ZWOA 5CLSA 4U75A 4U76A 4U70A 4QR8A 4FKCA 2V3YA 5CE6A 4HXXA 3D27A 2ZSGA 4B28A 2EA4A 2GG9A 4IF7A 2BH3A 4OOKA 1W7VA 1BOAA 1WBQA 1KP0A 2GU7A 2V6CA 2GU5A 2BWSA 3BIPA 2V3XA 5JI6A 1QZYA 2BWUA 2GG7A 2B3LA 4IKUA 2BN7A 1YW7A 2BHCA 1Y1NA 4IECA 1XGSA 1XGMA 2GGBA 2GU6A 5JFRA 1C22A 5E5BA 2GG0A 3PKEA 1WKMA 3RORA 4U6EA 4U73A 4A6WA 4ZWPA 3BIQA 4PNCA 1N51A 4FUKA 4U71A 2BWXA 4IPAA 3OVKA 2BHBA 1JAWA 1XGNA 1C27A 2MATA 3CTZA 1KQ9A 5D6EA 3S6BA 3PKDA 2Q95A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YW8 A;  5FCF A;  2GG3 A;  5JHU A;  4A6V A;  1KQ0 A;  3FM3 A;  3FMR A;  1YVM A;  4RGZ 1;  4S2T P;  3IL0 A;  2EA2 A;  4U69 A;  3PKC A;  4U6C A;  3CB5 A;  4U1B A;  1QXZ A;  3Q6D A;  2GG5 A;  4U6W A;  1B6A A;  4IKR A;  4FLK A;  2OAZ A;  2GA2 A;  2GZ5 A;  2GGC A;  4IU6 A;  2EVO A;  5FCH A;  1YJ3 A;  2P98 A;  2B3H A;  4PV4 A;  1R5H A;  1QXY A;  3I7M A;  4ZWU A;  2EVM A;  3PKA A;  3TB5 A;  4FO8 A;  3IU7 A;  4KM3 A;  2NQ6 A;  4RZZ A;  1R58 A;  4ZNG A;  4EGE A;  3O5V A;  2HOW A;  1XNZ A;  3MAT A;  1A16 A;  1WL6 A;  2B3K A;  2Q92 A;  1MAT A;  3OOO A;  2NQ7 A;  2GU4 A;  2BHD A;  1C23 A;  2V3Z A;  1B59 A;  4IDY A;  4Z7M A;  2ADU A;  2DFI A;  4S00 A;  1WY2 A;  5CIK A;  4IKT A;  4RZY A;  2G6P A;  2BHA A;  3IU8 A;  5E2C A;  4JUQ A;  1PV9 A;  2Q94 A;  2GG8 A;  2Q96 A;  4FLL A;  5CDL A;  4MAT A;  3BIT A;  1C21 A;  2BWV A;  2Q8K A;  2OKN A;  2IW2 A;  2BWY A;  2BWW A;  1WL9 A;  1WN1 A;  3FMQ A;  4U6J A;  1CHM A;  1R5G A;  2Q93 A;  4FLI A;  4FO7 A;  3TAV A;  3PEB A;  1M35 A;  4S01 A;  1O0X A;  4FLJ A;  1BN5 A;  4R60 A;  3MX6 A;  1WLR A;  5CDV A;  3IU9 A;  2GTX A;  4IKS A;  5CNX A;  3CB6 A;  2BWT A;  3IG4 A;  5D6F A;  1C24 A;  3QOC A;  3MR1 A;  2BB7 A;  3RVA A;  3L7G A;  2EVC A;  3PN9 A;  2GG2 A;  1QXW A;  3PKB A;  3L24 A;  2P99 A;  1W2M A;  2P9A A;  4S2R P;  5CDE A;  1XGO A;  1YW9 A;  4U6Z A;  4ZWO A;  5CLS A;  4U75 A;  4U76 A;  4U70 A;  4QR8 A;  4FKC A;  2V3Y A;  5CE6 A;  4HXX A;  3D27 A;  2ZSG A;  4B28 A;  2EA4 A;  2GG9 A;  4IF7 A;  2BH3 A;  4OOK A;  1W7V A;  1BOA A;  1WBQ A;  1KP0 A;  2GU7 A;  2V6C A;  2GU5 A;  2BWS A;  3BIP A;  2V3X A;  5JI6 A;  1QZY A;  2BWU A;  2GG7 A;  2B3L A;  4IKU A;  2BN7 A;  1YW7 A;  2BHC A;  1Y1N A;  4IEC A;  1XGS A;  1XGM A;  2GGB A;  2GU6 A;  5JFR A;  1C22 A;  5E5B A;  2GG0 A;  3PKE A;  1WKM A;  3ROR A;  4U6E A;  4U73 A;  4A6W A;  4ZWP A;  3BIQ A;  4PNC A;  1N51 A;  4FUK A;  4U71 A;  2BWX A;  4IPA A;  3OVK A;  2BHB A;  1JAW A;  1XGN A;  1C27 A;  2MAT A;  3CTZ A;  1KQ9 A;  5D6E A;  3S6B A;  3PKD A;  2Q95 A; 
#chains in the Genus database with same CATH topology
 1YW8 A;  5FCF A;  2GG3 A;  5JHU A;  4A6V A;  1KQ0 A;  3FM3 A;  3FMR A;  1YVM A;  4RGZ 1;  4S2T P;  3IL0 A;  2EA2 A;  4U69 A;  3PKC A;  4U6C A;  3CB5 A;  4U1B A;  1QXZ A;  3Q6D A;  2GG5 A;  4U6W A;  1B6A A;  4IKR A;  4FLK A;  2OAZ A;  2GA2 A;  2GZ5 A;  2GGC A;  4IU6 A;  2EVO A;  5FCH A;  1YJ3 A;  2P98 A;  2B3H A;  4PV4 A;  1R5H A;  1QXY A;  3I7M A;  4ZWU A;  2EVM A;  3PKA A;  3TB5 A;  4FO8 A;  3IU7 A;  4KM3 A;  2NQ6 A;  4RZZ A;  1R58 A;  4ZNG A;  4EGE A;  3O5V A;  2HOW A;  1XNZ A;  3MAT A;  1A16 A;  1WL6 A;  2B3K A;  2Q92 A;  1MAT A;  3OOO A;  2NQ7 A;  2GU4 A;  2BHD A;  1C23 A;  2V3Z A;  1B59 A;  4IDY A;  4Z7M A;  2ADU A;  2DFI A;  4S00 A;  1WY2 A;  5CIK A;  4IKT A;  4RZY A;  2G6P A;  2BHA A;  3IU8 A;  5E2C A;  4JUQ A;  1PV9 A;  2Q94 A;  2GG8 A;  2Q96 A;  4FLL A;  5CDL A;  4MAT A;  3BIT A;  1C21 A;  2BWV A;  2Q8K A;  2OKN A;  2IW2 A;  2BWY A;  2BWW A;  1WL9 A;  1WN1 A;  3FMQ A;  4U6J A;  1CHM A;  1R5G A;  2Q93 A;  4FLI A;  4FO7 A;  3TAV A;  3PEB A;  1M35 A;  4S01 A;  1O0X A;  4FLJ A;  1BN5 A;  4R60 A;  3MX6 A;  1WLR A;  5CDV A;  3IU9 A;  2GTX A;  4IKS A;  5CNX A;  3CB6 A;  2BWT A;  3IG4 A;  5D6F A;  1C24 A;  3QOC A;  3MR1 A;  2BB7 A;  3RVA A;  3L7G A;  2EVC A;  3PN9 A;  2GG2 A;  1QXW A;  3PKB A;  3L24 A;  2P99 A;  1W2M A;  2P9A A;  4S2R P;  5CDE A;  1XGO A;  1YW9 A;  4U6Z A;  4ZWO A;  5CLS A;  4U75 A;  4U76 A;  4U70 A;  4QR8 A;  4FKC A;  2V3Y A;  5CE6 A;  4HXX A;  3D27 A;  2ZSG A;  4B28 A;  2EA4 A;  2GG9 A;  4IF7 A;  2BH3 A;  4OOK A;  1W7V A;  1BOA A;  1WBQ A;  1KP0 A;  2GU7 A;  2V6C A;  2GU5 A;  2BWS A;  3BIP A;  2V3X A;  5JI6 A;  1QZY A;  2BWU A;  2GG7 A;  2B3L A;  4IKU A;  2BN7 A;  1YW7 A;  2BHC A;  1Y1N A;  4IEC A;  1XGS A;  1XGM A;  2GGB A;  2GU6 A;  5JFR A;  1C22 A;  5E5B A;  2GG0 A;  3PKE A;  1WKM A;  3ROR A;  4U6E A;  4U73 A;  4A6W A;  4ZWP A;  3BIQ A;  4PNC A;  1N51 A;  4FUK A;  4U71 A;  2BWX A;  4IPA A;  3OVK A;  2BHB A;  1JAW A;  1XGN A;  1C27 A;  2MAT A;  3CTZ A;  1KQ9 A;  5D6E A;  3S6B A;  3PKD A;  2Q95 A; 
#chains in the Genus database with same CATH homology
 1YW8 A;  5FCF A;  2GG3 A;  5JHU A;  4A6V A;  1KQ0 A;  3FM3 A;  3FMR A;  1YVM A;  4RGZ 1;  4S2T P;  3IL0 A;  2EA2 A;  4U69 A;  3PKC A;  4U6C A;  3CB5 A;  4U1B A;  1QXZ A;  3Q6D A;  2GG5 A;  4U6W A;  1B6A A;  4IKR A;  4FLK A;  2OAZ A;  2GA2 A;  2GZ5 A;  2GGC A;  4IU6 A;  2EVO A;  5FCH A;  1YJ3 A;  2P98 A;  2B3H A;  4PV4 A;  1R5H A;  1QXY A;  3I7M A;  4ZWU A;  2EVM A;  3PKA A;  3TB5 A;  4FO8 A;  3IU7 A;  4KM3 A;  2NQ6 A;  4RZZ A;  1R58 A;  4ZNG A;  4EGE A;  3O5V A;  2HOW A;  1XNZ A;  3MAT A;  1A16 A;  1WL6 A;  2B3K A;  2Q92 A;  1MAT A;  3OOO A;  2NQ7 A;  2GU4 A;  2BHD A;  1C23 A;  2V3Z A;  1B59 A;  4IDY A;  4Z7M A;  2ADU A;  2DFI A;  4S00 A;  1WY2 A;  5CIK A;  4IKT A;  4RZY A;  2G6P A;  2BHA A;  3IU8 A;  5E2C A;  4JUQ A;  1PV9 A;  2Q94 A;  2GG8 A;  2Q96 A;  4FLL A;  5CDL A;  4MAT A;  3BIT A;  1C21 A;  2BWV A;  2Q8K A;  2OKN A;  2IW2 A;  2BWY A;  2BWW A;  1WL9 A;  1WN1 A;  3FMQ A;  4U6J A;  1CHM A;  1R5G A;  2Q93 A;  4FLI A;  4FO7 A;  3TAV A;  3PEB A;  1M35 A;  4S01 A;  1O0X A;  4FLJ A;  1BN5 A;  4R60 A;  3MX6 A;  1WLR A;  5CDV A;  3IU9 A;  2GTX A;  4IKS A;  5CNX A;  3CB6 A;  2BWT A;  3IG4 A;  5D6F A;  1C24 A;  3QOC A;  3MR1 A;  2BB7 A;  3RVA A;  3L7G A;  2EVC A;  3PN9 A;  2GG2 A;  1QXW A;  3PKB A;  3L24 A;  2P99 A;  1W2M A;  2P9A A;  4S2R P;  5CDE A;  1XGO A;  1YW9 A;  4U6Z A;  4ZWO A;  5CLS A;  4U75 A;  4U76 A;  4U70 A;  4QR8 A;  4FKC A;  2V3Y A;  5CE6 A;  4HXX A;  3D27 A;  2ZSG A;  4B28 A;  2EA4 A;  2GG9 A;  4IF7 A;  2BH3 A;  4OOK A;  1W7V A;  1BOA A;  1WBQ A;  1KP0 A;  2GU7 A;  2V6C A;  2GU5 A;  2BWS A;  3BIP A;  2V3X A;  5JI6 A;  1QZY A;  2BWU A;  2GG7 A;  2B3L A;  4IKU A;  2BN7 A;  1YW7 A;  2BHC A;  1Y1N A;  4IEC A;  1XGS A;  1XGM A;  2GGB A;  2GU6 A;  5JFR A;  1C22 A;  5E5B A;  2GG0 A;  3PKE A;  1WKM A;  3ROR A;  4U6E A;  4U73 A;  4A6W A;  4ZWP A;  3BIQ A;  4PNC A;  1N51 A;  4FUK A;  4U71 A;  2BWX A;  4IPA A;  3OVK A;  2BHB A;  1JAW A;  1XGN A;  1C27 A;  2MAT A;  3CTZ A;  1KQ9 A;  5D6E A;  3S6B A;  3PKD A;  2Q95 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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