5A2OA

Crystal structure of the nitrate transporter nrt1.1 from arabidopsis thaliana in complex with nitrate.
Total Genus 149
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
149
sequence length
553
structure length
470
Chain Sequence
b'RPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPSGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMTQVAAVIVAAWRNRKLETLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDRSIGSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFGSMAMAVAALVELKRLRTAHAHGFYLLIPQYLIVGIGEALIYTGQLDFFLRECPKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFTGKAHPWIADDLNKGRLYNFYWLVAVLVALNFLIFLVFSKWYVYKEKRL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords NITRATE TRANSPORTER 1.1
publication title Molecular Basis of Nitrate Uptake by the Plant Nitrate Transporter Nrt1.1.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Transport protein
total genus 149
structure length 470
sequence length 553
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00854 PTR2 POT family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 5a2oA00
2CFPA 4JREA 4LEPA 1PV7A 4LDSA 4UVMA 4APSA 4J05A 4IKZA 4QIQA 4D2DA 4TPGA 4IU9A 4ZW9A 4IKWA 5A2NA 4JA3A 4OH3A 4IKYA 4PYPA 5EQHA 5D59A 2XUTA 5D6KA 5C65A 5EQIA 4TPJA 4U4WA 4ZWBA 4YBQA 4ZYRA 5D58A 4D2BA 4IU8A 4Q65A 4U4TA 5EQGA 2V8NA 4W6VA 1PV6A 4GBZA 2CFQA 3O7QA 4XNJA 4GBYA 4JR9A 4D2CA 4YB9D 4IKXA 4U4VA 4IKVA 5GXBA 1PW4A 4XNIA 4ZWCA 3O7PA 4GC0A 5A2OA 4TPHA 3WDOA 4OAAA 2Y5YA
chains in the Genus database with same CATH superfamily
1PVHB 5FLMD 3DGCL 4J05A 4D2DA 1ILKA 1M4CA 5D28B 4PYPA 2KZ1A 5D59A 1ETEA 2B8ZA 5EQGA 4NI9A 1CSGA 2O27A 2R93D 1RHGA 4IKVA 4A3GD 3OG6A 3PO2D 2ILKA 4BBRD 5D72A 1M47A 4NEJA 4A3LD 4TPJA 4ZWBA 4YPGC 4D2BA 3G9VB 2L3YA 1BGEA 4NN7A 3EW3A 3PIWA 4A3ED 3HMXB 3WDOA 4XNJA 2B91A 1F45B 5IP9D 3HHRA 1I1RB 2L3OA 4IU9A 5A2NA 1RW5A 2Z3RA 4NN6A 1HULA 2JA5D 5D58A 3I4MD 4A3MD 1ITFA 2JA7D 1LKIA 4ZWCA 1EMRA 1M49A 2B8XA 3O7PA 1PW6A 1BP3A 2CFPA 3L5XA 1RFBA 2ERJD 1N1FA 3L5WI 4YBQA 1P9MB 2HYMB 4U4TA 4GBZA 3IRHA 2IL6A 1HUWA 3UX9A 1M48A 1CYLA 3UEZE 2GMFA 4APSA 4QIQA 3NCBA 4IKWA 1NBPA 1FYHA 1V7NV 1CNT1 5L6YC 1KF9A 5TS9A 3O7QA 5GXBA 3TGXB 2Z3QA 3H0GD 1EERA 1FG9A 1IJZA 1BUYA 4LEPA 5C44D 2LAGA 5IYBD 1JLIA 2CYKA 4MHLA 2E9WC 3MZGA 4A3ID 1SCFA 4OAAA 1F6FA 1IK0A 1A7MA 3INKC 3HOYD 1D9GA 4FA8E 3N06A 4RS1A 5IP7D 4DKDA 3D87A 5E4EA 2R92D 2LMSA 3DUHC 1RCBA 3DLQI 4DKCA 1PW4A 1QVNA 3HHCA 1BGDA 3UF2A 5IYCD 3G6DA 5C65A 1CD9A 3D48P 2B5IA 1AU1A 5D70A 3DI3A 4EXNA 4A3KD 4BY1D 2O6IA 4O6KA 1IL6A 3NCFA 4GBYA 2Q7NB 3HOUD 4BY7D 5LQBA 1B5LA 1HWGA 1BBNA 4YDYI 4NN5A 5EQHA 1ALUA 2Q14A 3NPZA 3VA2A 3BPNA 5D22A 5C7XA 4ZF7A 4IKXA 4Z5RD 3QB7A 5KNHI 1IARA 4DOHA 3LB6A 4X51A 1Y14A 3SE3B 4YUEC 4ZW9A 3D85C 4DKEA 4LRLA 3WCYI 1HWHA 3FKID 1M4RA 1Y1WD 4A3CD 1M4AA 4WRLB 3HOVD 1J7VL 3PIVA 2JA8D 3S9DA 1LK3A 4TPHA 4PS4A 4I77Z 1ITLA 1Y6NL 1EKUA 4TPGA 1HIJA 1D9CA 5D6KA 3I4ND 1Y6KL 5EQIA 1AXIA 3EJJA 4W6VA 4EXPA 4XNIA 3BPOA 3QWRB 1BGCA 3QB1A 2B63D 1HGUA 5IYDD 2INTA 4A3FD 1BCNA 3NCEA 4UVMA 4IKZA 3UF5A 5D71A 4JA3A 4NEMA 4OH3A 3HOZD 2XQBA 1WU3I 5FHXA 3OQ3A 1CN4C 3HOXD 4O9HA 3BPLA 4D2CA 1ITIA 4U4VA 4A3BD 5C4XD 4A3DD 2Y5YA 3QAZA 1GNCA 4IKYA 4NI7A 4GRWA 1Z7CA 3Q1SI 1HZIA 4Q65A 1Y1VD 4BXXD 1A22A 4CNIC 2O26A 3NCCA 4GC0A 5A2OA 4A93D 1VLKA 4GS7A 1YKBA 4NKQC 4A3JD 1WCMD 1INRA 2Q98A 2B90A 3QT2C 2D9QA 4IU8A 3DI2A 3HOWD 1PV6A 2B8UA 1V7MV 2CFQA 4YB9D 2PSMA 2H24A 1Y6ML 3H3VE 3BESL 4ZS7A 1PV7A 3OG4A 1ITMA 4U4WA 4ZYRA 1EXZA 1LQSL 1PGRA 5C3ED 2R7ZD 2V8NA 5FUCA 1M4BA 4JR9A 1HIKA 3B5KA 4YQXA 3AYHA 1PY2A 4JREA 2VUMD 4LDSA 3LB6B 3PO3D 3N0PA 4DKFA 2JA6D 4BBSD 2XUTA 1EVSA 1AX8A 4J4LC 2B8YA 2OQPA 1GA3A 3SE4B 2D48A 1Z92A 1IRLA 2C35A
chains in the Genus database with same CATH topology
2CFPA 4JREA 4LEPA 1PV7A 4LDSA 4UVMA 4APSA 4J05A 4IKZA 4QIQA 4D2DA 4TPGA 4IU9A 4ZW9A 4IKWA 5A2NA 4JA3A 4OH3A 4IKYA 4PYPA 5EQHA 5D59A 2XUTA 5D6KA 5C65A 5EQIA 4TPJA 4U4WA 4ZWBA 4YBQA 4ZYRA 5D58A 4D2BA 4IU8A 4Q65A 4U4TA 5EQGA 2V8NA 4W6VA 1PV6A 4GBZA 2CFQA 3O7QA 4XNJA 4GBYA 4JR9A 4D2CA 4YB9D 4IKXA 4U4VA 4IKVA 5GXBA 1PW4A 4XNIA 4ZWCA 3O7PA 4GC0A 5A2OA 4TPHA 3WDOA 4OAAA 2Y5YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CFP A;  4JRE A;  4LEP A;  1PV7 A;  4LDS A;  4UVM A;  4APS A;  4J05 A;  4IKZ A;  4QIQ A;  4D2D A;  4TPG A;  4IU9 A;  4ZW9 A;  4IKW A;  5A2N A;  4JA3 A;  4OH3 A;  4IKY A;  4PYP A;  5EQH A;  5D59 A;  2XUT A;  5D6K A;  5C65 A;  5EQI A;  4TPJ A;  4U4W A;  4ZWB A;  4YBQ A;  4ZYR A;  5D58 A;  4D2B A;  4IU8 A;  4Q65 A;  4U4T A;  5EQG A;  2V8N A;  4W6V A;  1PV6 A;  4GBZ A;  2CFQ A;  3O7Q A;  4XNJ A;  4GBY A;  4JR9 A;  4D2C A;  4YB9 D;  4IKX A;  4U4V A;  4IKV A;  5GXB A;  1PW4 A;  4XNI A;  4ZWC A;  3O7P A;  4GC0 A;  5A2O A;  4TPH A;  3WDO A;  4OAA A;  2Y5Y A; 
#chains in the Genus database with same CATH topology
 1PVH B;  5FLM D;  3DGC L;  4J05 A;  4D2D A;  1ILK A;  1M4C A;  5D28 B;  4PYP A;  2KZ1 A;  5D59 A;  1ETE A;  2B8Z A;  5EQG A;  4NI9 A;  1CSG A;  2O27 A;  2R93 D;  1RHG A;  4IKV A;  4A3G D;  3OG6 A;  3PO2 D;  2ILK A;  4BBR D;  5D72 A;  1M47 A;  4NEJ A;  4A3L D;  4TPJ A;  4ZWB A;  4YPG C;  4D2B A;  3G9V B;  2L3Y A;  1BGE A;  4NN7 A;  3EW3 A;  3PIW A;  4A3E D;  3HMX B;  3WDO A;  4XNJ A;  2B91 A;  1F45 B;  5IP9 D;  3HHR A;  1I1R B;  2L3O A;  4IU9 A;  5A2N A;  1RW5 A;  2Z3R A;  4NN6 A;  1HUL A;  2JA5 D;  5D58 A;  3I4M D;  4A3M D;  1ITF A;  2JA7 D;  1LKI A;  4ZWC A;  1EMR A;  1M49 A;  2B8X A;  3O7P A;  1PW6 A;  1BP3 A;  2CFP A;  3L5X A;  1RFB A;  2ERJ D;  1N1F A;  3L5W I;  4YBQ A;  1P9M B;  2HYM B;  4U4T A;  4GBZ A;  3IRH A;  2IL6 A;  1HUW A;  3UX9 A;  1M48 A;  1CYL A;  3UEZ E;  2GMF A;  4APS A;  4QIQ A;  3NCB A;  4IKW A;  1NBP A;  1FYH A;  1V7N V;  1CNT 1;  5L6Y C;  1KF9 A;  5TS9 A;  3O7Q A;  5GXB A;  3TGX B;  2Z3Q A;  3H0G D;  1EER A;  1FG9 A;  1IJZ A;  1BUY A;  4LEP A;  5C44 D;  2LAG A;  5IYB D;  1JLI A;  2CYK A;  4MHL A;  2E9W C;  3MZG A;  4A3I D;  1SCF A;  4OAA A;  1F6F A;  1IK0 A;  1A7M A;  3INK C;  3HOY D;  1D9G A;  4FA8 E;  3N06 A;  4RS1 A;  5IP7 D;  4DKD A;  3D87 A;  5E4E A;  2R92 D;  2LMS A;  3DUH C;  1RCB A;  3DLQ I;  4DKC A;  1PW4 A;  1QVN A;  3HHC A;  1BGD A;  3UF2 A;  5IYC D;  3G6D A;  5C65 A;  1CD9 A;  3D48 P;  2B5I A;  1AU1 A;  5D70 A;  3DI3 A;  4EXN A;  4A3K D;  4BY1 D;  2O6I A;  4O6K A;  1IL6 A;  3NCF A;  4GBY A;  2Q7N B;  3HOU D;  4BY7 D;  5LQB A;  1B5L A;  1HWG A;  1BBN A;  4YDY I;  4NN5 A;  5EQH A;  1ALU A;  2Q14 A;  3NPZ A;  3VA2 A;  3BPN A;  5D22 A;  5C7X A;  4ZF7 A;  4IKX A;  4Z5R D;  3QB7 A;  5KNH I;  1IAR A;  4DOH A;  3LB6 A;  4X51 A;  1Y14 A;  3SE3 B;  4YUE C;  4ZW9 A;  3D85 C;  4DKE A;  4LRL A;  3WCY I;  1HWH A;  3FKI D;  1M4R A;  1Y1W D;  4A3C D;  1M4A A;  4WRL B;  3HOV D;  1J7V L;  3PIV A;  2JA8 D;  3S9D A;  1LK3 A;  4TPH A;  4PS4 A;  4I77 Z;  1ITL A;  1Y6N L;  1EKU A;  4TPG A;  1HIJ A;  1D9C A;  5D6K A;  3I4N D;  1Y6K L;  5EQI A;  1AXI A;  3EJJ A;  4W6V A;  4EXP A;  4XNI A;  3BPO A;  3QWR B;  1BGC A;  3QB1 A;  2B63 D;  1HGU A;  5IYD D;  2INT A;  4A3F D;  1BCN A;  3NCE A;  4UVM A;  4IKZ A;  3UF5 A;  5D71 A;  4JA3 A;  4NEM A;  4OH3 A;  3HOZ D;  2XQB A;  1WU3 I;  5FHX A;  3OQ3 A;  1CN4 C;  3HOX D;  4O9H A;  3BPL A;  4D2C A;  1ITI A;  4U4V A;  4A3B D;  5C4X D;  4A3D D;  2Y5Y A;  3QAZ A;  1GNC A;  4IKY A;  4NI7 A;  4GRW A;  1Z7C A;  3Q1S I;  1HZI A;  4Q65 A;  1Y1V D;  4BXX D;  1A22 A;  4CNI C;  2O26 A;  3NCC A;  4GC0 A;  5A2O A;  4A93 D;  1VLK A;  4GS7 A;  1YKB A;  4NKQ C;  4A3J D;  1WCM D;  1INR A;  2Q98 A;  2B90 A;  3QT2 C;  2D9Q A;  4IU8 A;  3DI2 A;  3HOW D;  1PV6 A;  2B8U A;  1V7M V;  2CFQ A;  4YB9 D;  2PSM A;  2H24 A;  1Y6M L;  3H3V E;  3BES L;  4ZS7 A;  1PV7 A;  3OG4 A;  1ITM A;  4U4W A;  4ZYR A;  1EXZ A;  1LQS L;  1PGR A;  5C3E D;  2R7Z D;  2V8N A;  5FUC A;  1M4B A;  4JR9 A;  1HIK A;  3B5K A;  4YQX A;  3AYH A;  1PY2 A;  4JRE A;  2VUM D;  4LDS A;  3LB6 B;  3PO3 D;  3N0P A;  4DKF A;  2JA6 D;  4BBS D;  2XUT A;  1EVS A;  1AX8 A;  4J4L C;  2B8Y A;  2OQP A;  1GA3 A;  3SE4 B;  2D48 A;  1Z92 A;  1IRL A;  2C35 A; 
#chains in the Genus database with same CATH homology
 2CFP A;  4JRE A;  4LEP A;  1PV7 A;  4LDS A;  4UVM A;  4APS A;  4J05 A;  4IKZ A;  4QIQ A;  4D2D A;  4TPG A;  4IU9 A;  4ZW9 A;  4IKW A;  5A2N A;  4JA3 A;  4OH3 A;  4IKY A;  4PYP A;  5EQH A;  5D59 A;  2XUT A;  5D6K A;  5C65 A;  5EQI A;  4TPJ A;  4U4W A;  4ZWB A;  4YBQ A;  4ZYR A;  5D58 A;  4D2B A;  4IU8 A;  4Q65 A;  4U4T A;  5EQG A;  2V8N A;  4W6V A;  1PV6 A;  4GBZ A;  2CFQ A;  3O7Q A;  4XNJ A;  4GBY A;  4JR9 A;  4D2C A;  4YB9 D;  4IKX A;  4U4V A;  4IKV A;  5GXB A;  1PW4 A;  4XNI A;  4ZWC A;  3O7P A;  4GC0 A;  5A2O A;  4TPH A;  3WDO A;  4OAA A;  2Y5Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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