5A2QR

Structure of the hcv ires bound to the human ribosome
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
132
structure length
132
Chain Sequence
GRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Cryo-Em Structure of Hepatitis C Virus Ires Bound to the Human Ribosome at 3.9 Angstrom Resolution
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 18S RRNA
total genus 28
structure length 132
sequence length 132
ec nomenclature
pdb deposition date 2015-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF00833 Ribosomal_S17e Ribosomal S17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.60.20 Mainly Alpha Orthogonal Bundle Diphtheria Toxin Repressor; domain 2 Ribosomal protein S17e-like 5a2qR01
5IT9R 5FLXR 3J81R 3JAMR 3J7AW 1RQ6A 3J80R 5A2QR
chains in the Genus database with same CATH superfamily
2MZ4A 1ON2A 1B1BA 1BI3A 2EV5A 3JAMR 2HYGD 3J81R 1RQ6A 1G3TA 5FLXR 2MVTA 2QQAA 2TDXA 2X98A 4HX8A 2F5FA 2F5DA 4HV5A 4O5VA 2F5CA 3J80R 3R60A 1C0WA 4HX7A 2DTRA 5IT9R 2HYFA 4O6JA 2QQ9A 3R61A 1BI2A 2EV6A 1ON1A 1BI1A 1G3WA 1G3SA 1P92A 1FWZA 1FX7A 2F5EA 2M35A 2EV0A 1G3YA 2QQBA 3A52A 3GLXA 3J7AW 2MUNA 4HV6A 1DDNA 2ISZA 1BI0A 1XCVA 2H09A 2P0TA 1U8RA 1F5TA 1DPRA 5A2QR 4HX4A
chains in the Genus database with same CATH topology
5IT9R 5FLXR 3J81R 3JAMR 3J7AW 1RQ6A 3J80R 5A2QR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IT9 R;  5FLX R;  3J81 R;  3JAM R;  3J7A W;  1RQ6 A;  3J80 R;  5A2Q R; 
#chains in the Genus database with same CATH topology
 2MZ4 A;  1ON2 A;  1B1B A;  1BI3 A;  2EV5 A;  3JAM R;  2HYG D;  3J81 R;  1RQ6 A;  1G3T A;  5FLX R;  2MVT A;  2QQA A;  2TDX A;  2X98 A;  4HX8 A;  2F5F A;  2F5D A;  4HV5 A;  4O5V A;  2F5C A;  3J80 R;  3R60 A;  1C0W A;  4HX7 A;  2DTR A;  5IT9 R;  2HYF A;  4O6J A;  2QQ9 A;  3R61 A;  1BI2 A;  2EV6 A;  1ON1 A;  1BI1 A;  1G3W A;  1G3S A;  1P92 A;  1FWZ A;  1FX7 A;  2F5E A;  2M35 A;  2EV0 A;  1G3Y A;  2QQB A;  3A52 A;  3GLX A;  3J7A W;  2MUN A;  4HV6 A;  1DDN A;  2ISZ A;  1BI0 A;  1XCV A;  2H09 A;  2P0T A;  1U8R A;  1F5T A;  1DPR A;  5A2Q R;  4HX4 A; 
#chains in the Genus database with same CATH homology
 5IT9 R;  5FLX R;  3J81 R;  3JAM R;  3J7A W;  1RQ6 A;  3J80 R;  5A2Q R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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