5A2QR

Structure of the hcv ires bound to the human ribosome
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
132
structure length
132
Chain Sequence
GRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 18S RRNA
publication title Cryo-Em Structure of Hepatitis C Virus Ires Bound to the Human Ribosome at 3.9 Angstrom Resolution
pubmed doi rcsb
total genus 28
structure length 132
sequence length 132
ec nomenclature
pdb deposition date 2015-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF00833 Ribosomal_S17e Ribosomal S17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.60.20 Mainly Alpha Orthogonal Bundle Diphtheria Toxin Repressor; domain 2 Ribosomal protein S17e-like 5a2qR01
5A2QR 3J7AW 5FLXR 5IT9R 1RQ6A 3J81R 3JAMR 3J80R
chains in the Genus database with same CATH superfamily
2H09A 3A52A 1G3SA 2X98A 4O6JA 4HV5A 1DPRA 1DDNA 4HV6A 4HX8A 2ISZA 1FWZA 3R61A 2F5DA 2F5CA 1XCVA 2P0TA 2M35A 2HYFA 3JAMR 5FLXR 2F5FA 2TDXA 3J81R 1B1BA 1F5TA 3J80R 1U8RA 2QQBA 1G3YA 3R60A 2DTRA 1BI0A 1FX7A 3J7AW 4HX4A 2EV6A 2QQAA 1ON2A 1G3WA 2F5EA 2HYGD 4HX7A 2QQ9A 3GLXA 2MVTA 5A2QR 1BI1A 2MZ4A 1C0WA 2MUNA 5IT9R 1G3TA 2EV0A 1RQ6A 4O5VA 1ON1A 1P92A 1BI2A 1BI3A 2EV5A
chains in the Genus database with same CATH topology
5A2QR 3J7AW 5FLXR 5IT9R 1RQ6A 3J81R 3JAMR 3J80R
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5A2Q R;  3J7A W;  5FLX R;  5IT9 R;  1RQ6 A;  3J81 R;  3JAM R;  3J80 R; 
#chains in the Genus database with same CATH topology
 2H09 A;  3A52 A;  1G3S A;  2X98 A;  4O6J A;  4HV5 A;  1DPR A;  1DDN A;  4HV6 A;  4HX8 A;  2ISZ A;  1FWZ A;  3R61 A;  2F5D A;  2F5C A;  1XCV A;  2P0T A;  2M35 A;  2HYF A;  3JAM R;  5FLX R;  2F5F A;  2TDX A;  3J81 R;  1B1B A;  1F5T A;  3J80 R;  1U8R A;  2QQB A;  1G3Y A;  3R60 A;  2DTR A;  1BI0 A;  1FX7 A;  3J7A W;  4HX4 A;  2EV6 A;  2QQA A;  1ON2 A;  1G3W A;  2F5E A;  2HYG D;  4HX7 A;  2QQ9 A;  3GLX A;  2MVT A;  5A2Q R;  1BI1 A;  2MZ4 A;  1C0W A;  2MUN A;  5IT9 R;  1G3T A;  2EV0 A;  1RQ6 A;  4O5V A;  1ON1 A;  1P92 A;  1BI2 A;  1BI3 A;  2EV5 A; 
#chains in the Genus database with same CATH homology
 5A2Q R;  3J7A W;  5FLX R;  5IT9 R;  1RQ6 A;  3J81 R;  3JAM R;  3J80 R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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