5A78A

Crystal structure of the homing endonuclease i-cvui in complex with i- crei target (c1221) in the presence of 2 mm mg revealing dna not cleaved
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
157
structure length
157
Chain Sequence
NFHDQLKFAWLAGFVDADGCINAQIVSREDYLLKYQVRVSLTVFQSTTQHFILLDIQKILGCGTVRKRNDGMSEFCVVGGTSLQTTLEKLLPYLQLKRAQAKLVLQIIKKLPNTKDPSVLMEAALLADKVGLLTDGKKRTILAENVRECLKKLGHVV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords DNA ENDONUCLEASE I-CVUI
publication title Crystal Structure of the Homing Endonuclease I-Cvui Provides a New Template for Genome Modification
pubmed doi rcsb
source organism Chlorella vulgaris
total genus 46
structure length 157
sequence length 157
chains with identical sequence B
ec nomenclature ec 3.1.-.-:
pdb deposition date 2015-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00961 LAGLIDADG_1 LAGLIDADG endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 5a78A00
2I3QA 5E5SA 4UN8A 1R7MA 2XE0A 2VS7A 1DFAA 4UT0A 5AKNA 2CW8A 2EX5A 3E54A 5A74A 3C0WA 1U0CA 4UN9A 4D6NA 4Z1XA 4LQ0A 3MIPA 2XE0B 5AK9A 2O7MA 5A78A 3OOLA 3MXBB 1G9ZA 4AAGA 3OORA 1T9IA 1JVAA 3MXBA 1LWTA 4AAEA 4Z1ZA 4AQXA 4UN7G 2VBOA 4UN8G 3HYJA 2I3PA 1LWSA 5A0WA 1T9JA 2CW7A 1N3FA 4UN9G 1UM2A 4Z20A 2QOJZ 4UNBA 1EF0A 2VBLB 5E63A 4AABA 2VBOB 4UNAA 5A77A 4AAFA 4YHXA 2VBNA 2VBLA 5E67A 4YITA 3MX9A 4AADA 4LOXA 1VDEA 2VBJB 5A72A 3KO2A 1N3EA 5E5OA 5A0MA 3R7PA 1U0DA 3MXAA 3HYIA 1MOWA 2VBJA 5AKFA 1B24A 3C0XA 5AKMA 4YISA 3EH8A 2VBNB 2DCHX 1AF5A 1M5XA 2FLDA 5A0MB 3MISA 3FD2A 2VS8A 3QQYA 1P8KZ 4EFJA 2AB5A 4D6OA 1DQ3A 4UNCA 3UVFA 1G9YA 1BP7A 4AQUA 4UN7A
chains in the Genus database with same CATH superfamily
2I3QA 5E5SA 4UN8A 1R7MA 2XE0A 2VS7A 1DFAA 4UT0A 5AKNA 2CW8A 2EX5A 3E54A 5A74A 3C0WA 1U0CA 4UN9A 4D6NA 4Z1XA 4LQ0A 2F4LA 3MIPA 4KZSA 2XE0B 5AK9A 2O7MA 5A78A 3OOLA 3MXBB 1G9ZA 4AAGA 3OORA 1T9IA 1JVAA 3MXBA 1LWTA 4AAEA 4Z1ZA 4AQXA 4UN7G 2VBOA 4UN8G 3HYJA 2I3PA 1LWSA 5A0WA 1T9JA 2CW7A 1N3FA 4UN9G 1UM2A 4Z20A 2QOJZ 4UNBA 1EF0A 2VBLB 5E63A 4AABA 2VBOB 4UNAA 5A77A 4AAFA 4YHXA 2VBNA 2VBLA 5E67A 4YITA 3MX9A 4AADA 4LOXA 1VDEA 2VBJB 5A72A 3KO2A 1N3EA 5E5OA 5A0MA 3R7PA 1U0DA 3MXAA 3HYIA 1MOWA 2VBJA 5AKFA 1B24A 3C0XA 5AKMA 4YISA 3EH8A 2VBNB 2DCHX 1AF5A 1M5XA 2FLDA 5A0MB 3MISA 3FD2A 2VS8A 3QQYA 1P8KZ 4EFJA 2AB5A 4D6OA 1DQ3A 4UNCA 3UVFA 1G9YA 1BP7A 4AQUA 4UN7A
chains in the Genus database with same CATH topology
2I3QA 5E5SA 4UN8A 1R7MA 2XE0A 2VS7A 1DFAA 4UT0A 5AKNA 2CW8A 2EX5A 3E54A 5A74A 3C0WA 1U0CA 4UN9A 4D6NA 4Z1XA 4LQ0A 3MIPA 2XE0B 5AK9A 2O7MA 5A78A 3OOLA 3MXBB 1G9ZA 4AAGA 3OORA 1T9IA 1JVAA 3MXBA 1LWTA 4AAEA 4Z1ZA 4AQXA 4UN7G 2VBOA 4UN8G 3HYJA 2I3PA 1LWSA 5A0WA 1T9JA 2CW7A 1N3FA 4UN9G 1UM2A 4Z20A 2QOJZ 4UNBA 1EF0A 2VBLB 5E63A 4AABA 2VBOB 4UNAA 5A77A 4AAFA 4YHXA 2VBNA 2VBLA 5E67A 4YITA 3MX9A 4AADA 4LOXA 1VDEA 2VBJB 5A72A 3KO2A 1N3EA 5E5OA 5A0MA 3R7PA 1U0DA 3MXAA 3HYIA 1MOWA 2VBJA 5AKFA 1B24A 3C0XA 5AKMA 4YISA 3EH8A 2VBNB 2DCHX 1AF5A 1M5XA 2FLDA 5A0MB 3MISA 3FD2A 2VS8A 3QQYA 1P8KZ 4EFJA 2AB5A 4D6OA 1DQ3A 4UNCA 3UVFA 1G9YA 1BP7A 4AQUA 4UN7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2I3Q A;  5E5S A;  4UN8 A;  1R7M A;  2XE0 A;  2VS7 A;  1DFA A;  4UT0 A;  5AKN A;  2CW8 A;  2EX5 A;  3E54 A;  5A74 A;  3C0W A;  1U0C A;  4UN9 A;  4D6N A;  4Z1X A;  4LQ0 A;  3MIP A;  2XE0 B;  5AK9 A;  2O7M A;  5A78 A;  3OOL A;  3MXB B;  1G9Z A;  4AAG A;  3OOR A;  1T9I A;  1JVA A;  3MXB A;  1LWT A;  4AAE A;  4Z1Z A;  4AQX A;  4UN7 G;  2VBO A;  4UN8 G;  3HYJ A;  2I3P A;  1LWS A;  5A0W A;  1T9J A;  2CW7 A;  1N3F A;  4UN9 G;  1UM2 A;  4Z20 A;  2QOJ Z;  4UNB A;  1EF0 A;  2VBL B;  5E63 A;  4AAB A;  2VBO B;  4UNA A;  5A77 A;  4AAF A;  4YHX A;  2VBN A;  2VBL A;  5E67 A;  4YIT A;  3MX9 A;  4AAD A;  4LOX A;  1VDE A;  2VBJ B;  5A72 A;  3KO2 A;  1N3E A;  5E5O A;  5A0M A;  3R7P A;  1U0D A;  3MXA A;  3HYI A;  1MOW A;  2VBJ A;  5AKF A;  1B24 A;  3C0X A;  5AKM A;  4YIS A;  3EH8 A;  2VBN B;  2DCH X;  1AF5 A;  1M5X A;  2FLD A;  5A0M B;  3MIS A;  3FD2 A;  2VS8 A;  3QQY A;  1P8K Z;  4EFJ A;  2AB5 A;  4D6O A;  1DQ3 A;  4UNC A;  3UVF A;  1G9Y A;  1BP7 A;  4AQU A;  4UN7 A; 
#chains in the Genus database with same CATH topology
 2I3Q A;  5E5S A;  4UN8 A;  1R7M A;  2XE0 A;  2VS7 A;  1DFA A;  4UT0 A;  5AKN A;  2CW8 A;  2EX5 A;  3E54 A;  5A74 A;  3C0W A;  1U0C A;  4UN9 A;  4D6N A;  4Z1X A;  4LQ0 A;  2F4L A;  3MIP A;  4KZS A;  2XE0 B;  5AK9 A;  2O7M A;  5A78 A;  3OOL A;  3MXB B;  1G9Z A;  4AAG A;  3OOR A;  1T9I A;  1JVA A;  3MXB A;  1LWT A;  4AAE A;  4Z1Z A;  4AQX A;  4UN7 G;  2VBO A;  4UN8 G;  3HYJ A;  2I3P A;  1LWS A;  5A0W A;  1T9J A;  2CW7 A;  1N3F A;  4UN9 G;  1UM2 A;  4Z20 A;  2QOJ Z;  4UNB A;  1EF0 A;  2VBL B;  5E63 A;  4AAB A;  2VBO B;  4UNA A;  5A77 A;  4AAF A;  4YHX A;  2VBN A;  2VBL A;  5E67 A;  4YIT A;  3MX9 A;  4AAD A;  4LOX A;  1VDE A;  2VBJ B;  5A72 A;  3KO2 A;  1N3E A;  5E5O A;  5A0M A;  3R7P A;  1U0D A;  3MXA A;  3HYI A;  1MOW A;  2VBJ A;  5AKF A;  1B24 A;  3C0X A;  5AKM A;  4YIS A;  3EH8 A;  2VBN B;  2DCH X;  1AF5 A;  1M5X A;  2FLD A;  5A0M B;  3MIS A;  3FD2 A;  2VS8 A;  3QQY A;  1P8K Z;  4EFJ A;  2AB5 A;  4D6O A;  1DQ3 A;  4UNC A;  3UVF A;  1G9Y A;  1BP7 A;  4AQU A;  4UN7 A; 
#chains in the Genus database with same CATH homology
 2I3Q A;  5E5S A;  4UN8 A;  1R7M A;  2XE0 A;  2VS7 A;  1DFA A;  4UT0 A;  5AKN A;  2CW8 A;  2EX5 A;  3E54 A;  5A74 A;  3C0W A;  1U0C A;  4UN9 A;  4D6N A;  4Z1X A;  4LQ0 A;  3MIP A;  2XE0 B;  5AK9 A;  2O7M A;  5A78 A;  3OOL A;  3MXB B;  1G9Z A;  4AAG A;  3OOR A;  1T9I A;  1JVA A;  3MXB A;  1LWT A;  4AAE A;  4Z1Z A;  4AQX A;  4UN7 G;  2VBO A;  4UN8 G;  3HYJ A;  2I3P A;  1LWS A;  5A0W A;  1T9J A;  2CW7 A;  1N3F A;  4UN9 G;  1UM2 A;  4Z20 A;  2QOJ Z;  4UNB A;  1EF0 A;  2VBL B;  5E63 A;  4AAB A;  2VBO B;  4UNA A;  5A77 A;  4AAF A;  4YHX A;  2VBN A;  2VBL A;  5E67 A;  4YIT A;  3MX9 A;  4AAD A;  4LOX A;  1VDE A;  2VBJ B;  5A72 A;  3KO2 A;  1N3E A;  5E5O A;  5A0M A;  3R7P A;  1U0D A;  3MXA A;  3HYI A;  1MOW A;  2VBJ A;  5AKF A;  1B24 A;  3C0X A;  5AKM A;  4YIS A;  3EH8 A;  2VBN B;  2DCH X;  1AF5 A;  1M5X A;  2FLD A;  5A0M B;  3MIS A;  3FD2 A;  2VS8 A;  3QQY A;  1P8K Z;  4EFJ A;  2AB5 A;  4D6O A;  1DQ3 A;  4UNC A;  3UVF A;  1G9Y A;  1BP7 A;  4AQU A;  4UN7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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