5AFMB

Alpha7-achbp in complex with lobeline and fragment 4
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
207
structure length
207
Chain Sequence
GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKGRS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
source organism Homo sapiens
publication title Molecular Blueprint of Allosteric Binding Sites in a Homologue of the Agonist-Binding Domain of the Alpha7 Nicotinic Acetylcholine Receptor.
pubmed doi rcsb
molecule keywords ACETYLCHOLINE-BINDING PROTEIN, NEURONAL ACETYLCHOLINE RECEPT
total genus 41
structure length 207
sequence length 207
ec nomenclature
pdb deposition date 2015-01-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5afmB00
3P50A 4EZ1A 3EHZA 2BYQA 2UZ6A 5AFNA 4AFTA 2C9TA 3LSVA 4QH4A 5JMEA 2BG9E 4HFCA 4HFHA 4UM3P 4A98A 2XQ4A 5CO5A 4Z91A 3SQ9A 3UUBA 3JAEA 4UM1A 3WTMA 2BYSA 2BYNA 3U8NA 4ZRUA 5J5FA 2X00A 4TNVA 3IGQA 2XQ6A 2XZ6A 4F8HA 3C79A 5KZUA 4TWDA 3EAMA 4IREA 4LMLA 3UU3A 5KE4A 2YN6A 4QH1A 2PGZA 5J5IA 1UV6A 2W8FA 3T4MA 3U8KA 5HCMA 3WTIA 4TNWA 4A97A 2W8GA 4COFA 4TWHA 2YMDA 4WV9A 5FJVA 2Y57A 4IL4A 3U8MA 3SH1A 2BYRA 2Y7YA 2BYPA 4ZZBA 4BQTA 4DBMA 2BR8A 3U8JA 4ALXA 4TWFA 4PIRA 4ILCA 4QACA 2XQ3A 2BG9A 4LMKA 1I9BA 4HFIA 2WZYA 2XZ5A 3RQUA 5L47A 2BG9B 4NPPA 3TLWA 2WN9A 3EI0A 4X5TA 3TLTA 3UQ4A 5BW2A 2XYSA 4IL9A 4ZJSA 5IUXA 4ILAA 3WTLA 3RIAA 2XNTA 2XQ8A 5HEGA 2XYTA 2YKSA 5HEUA 3WTNA 5AINA 4HQPA 5SYOA 3SQ6A 3WTJA 2Y54A 4XK9A 4UM3S 2VL0A 3P4WA 5HEJA 3PEOA 4UXUA 2ZJUA 2XNUA 2WNCA 5AFJA 3WTKA 2XQAA 3TLVA 2YOEA 4XHEA 3UU5A 2XQ7A 2WNLA 3WTOA 3ZKRA 5L4EA 2BJ0A 3RIFA 4QABA 3C84A 3PMZA 5AFHA 5LG3A 4AFGA 2BR7A 5AFMB 1UW6A 3JAFA 5J5GA 4UM3A 3TLSA 4ZK4A 3ZDGA 4HFDA 2QC1B 2XNVA 4QAAA 5BP0A 4ZZCA 3RI5A 4NZBA 4UY2A 4B5DA 5J0ZA 5HEOA 3UU6A 4HFEA 3UQ7A 5HCJA 5HEHA 5CFBA 4ZJTA 4Z90A 5J5HA 2X00D 2XQ5A 3UU4A 5AFLA 5L4HA 3TLUA 2XQ9A 1UX2A 4FRRA 4LMJA 3UU8A 2Y56A 4QH5A 3RQWA 3WTHA 2YMEA 2WNJA 2BG9C 4HFBA 4AFHA 4ZK1A 5BRXA 3ZDHA 5LXBA 4ILBA 4ZR6A 3WIPA 5TVCA 3RHWA 3U8LA 2Y58A 3SIOA 2ZJVA 4BFQA 3GUAA 3JADA 4D01A 5AFMA 5AFKA 2PH9A
chains in the Genus database with same CATH superfamily
3P50A 4EZ1A 3EHZA 2BYQA 2UZ6A 5AFNA 4AFTA 2C9TA 3LSVA 4QH4A 5JMEA 2BG9E 4HFCA 4HFHA 4UM3P 4A98A 2XQ4A 5CO5A 4Z91A 3SQ9A 3UUBA 3JAEA 4UM1A 3WTMA 2BYSA 2BYNA 3U8NA 4ZRUA 5J5FA 2X00A 4TNVA 3IGQA 2XQ6A 2XZ6A 4F8HA 3C79A 5KZUA 4TWDA 3EAMA 4IREA 4LMLA 3UU3A 5KE4A 2YN6A 4QH1A 2PGZA 5J5IA 1UV6A 2W8FA 3T4MA 3U8KA 5HCMA 3WTIA 4TNWA 4A97A 2W8GA 4COFA 4TWHA 2YMDA 4WV9A 5FJVA 2Y57A 4IL4A 3U8MA 3SH1A 2BYRA 2Y7YA 2BYPA 4ZZBA 4BQTA 4DBMA 2BR8A 3U8JA 4ALXA 4TWFA 4PIRA 4ILCA 4QACA 2XQ3A 2BG9A 4LMKA 1I9BA 4HFIA 2WZYA 2XZ5A 3RQUA 5L47A 2BG9B 4NPPA 3TLWA 2WN9A 3EI0A 4X5TA 3TLTA 3UQ4A 5BW2A 2XYSA 4IL9A 4ZJSA 5IUXA 4ILAA 3WTLA 3RIAA 2XNTA 2XQ8A 5HEGA 2XYTA 2YKSA 5HEUA 3WTNA 5AINA 4HQPA 5SYOA 3SQ6A 3WTJA 2Y54A 4XK9A 4UM3S 2VL0A 3P4WA 5HEJA 3PEOA 4UXUA 2ZJUA 2XNUA 2WNCA 5AFJA 3WTKA 2XQAA 3TLVA 2YOEA 4XHEA 3UU5A 2XQ7A 2WNLA 3WTOA 3ZKRA 5L4EA 2BJ0A 3RIFA 4QABA 3C84A 3PMZA 5AFHA 5LG3A 4AFGA 2BR7A 5AFMB 1UW6A 3JAFA 5J5GA 4UM3A 3TLSA 4ZK4A 3ZDGA 4HFDA 2QC1B 2XNVA 4QAAA 5BP0A 4ZZCA 3RI5A 4NZBA 4UY2A 4B5DA 5J0ZA 5HEOA 3UU6A 4HFEA 3UQ7A 5HCJA 5HEHA 5CFBA 4ZJTA 4Z90A 5J5HA 2X00D 2XQ5A 3UU4A 5AFLA 5L4HA 3TLUA 2XQ9A 1UX2A 4FRRA 4LMJA 3UU8A 2Y56A 4QH5A 3RQWA 3WTHA 2YMEA 2WNJA 2BG9C 4HFBA 4AFHA 4ZK1A 5BRXA 3ZDHA 5LXBA 4ILBA 4ZR6A 3WIPA 5TVCA 3RHWA 3U8LA 2Y58A 3SIOA 2ZJVA 4BFQA 3GUAA 3JADA 4D01A 5AFMA 5AFKA 2PH9A
chains in the Genus database with same CATH topology
3P50A 4EZ1A 3EHZA 2BYQA 2UZ6A 5AFNA 4AFTA 2C9TA 3LSVA 4QH4A 5JMEA 2BG9E 4HFCA 4HFHA 4UM3P 4A98A 2XQ4A 5CO5A 4Z91A 3SQ9A 3UUBA 3JAEA 4UM1A 3WTMA 2BYSA 2BYNA 3U8NA 4ZRUA 5J5FA 2X00A 4TNVA 3IGQA 2XQ6A 2XZ6A 4F8HA 3C79A 5KZUA 4TWDA 3EAMA 4IREA 4LMLA 3UU3A 5KE4A 2YN6A 4QH1A 2PGZA 5J5IA 1UV6A 2W8FA 3T4MA 3U8KA 5HCMA 3WTIA 4TNWA 4A97A 2W8GA 4COFA 4TWHA 2YMDA 4WV9A 5FJVA 2Y57A 4IL4A 3U8MA 3SH1A 2BYRA 2Y7YA 2BYPA 4ZZBA 4BQTA 4DBMA 2BR8A 3U8JA 4ALXA 4TWFA 4PIRA 4ILCA 4QACA 2XQ3A 2BG9A 4LMKA 1I9BA 4HFIA 2WZYA 2XZ5A 3RQUA 5L47A 2BG9B 4NPPA 3TLWA 2WN9A 3EI0A 4X5TA 3TLTA 3UQ4A 5BW2A 2XYSA 4IL9A 4ZJSA 5IUXA 4ILAA 3WTLA 3RIAA 2XNTA 2XQ8A 5HEGA 2XYTA 2YKSA 5HEUA 3WTNA 5AINA 4HQPA 5SYOA 3SQ6A 3WTJA 2Y54A 4XK9A 4UM3S 2VL0A 3P4WA 5HEJA 3PEOA 4UXUA 2ZJUA 2XNUA 2WNCA 5AFJA 3WTKA 2XQAA 3TLVA 2YOEA 4XHEA 3UU5A 2XQ7A 2WNLA 3WTOA 3ZKRA 5L4EA 2BJ0A 3RIFA 4QABA 3C84A 3PMZA 5AFHA 5LG3A 4AFGA 2BR7A 5AFMB 1UW6A 3JAFA 5J5GA 4UM3A 3TLSA 4ZK4A 3ZDGA 4HFDA 2QC1B 2XNVA 4QAAA 5BP0A 4ZZCA 3RI5A 4NZBA 4UY2A 4B5DA 5J0ZA 5HEOA 3UU6A 4HFEA 3UQ7A 5HCJA 5HEHA 5CFBA 4ZJTA 4Z90A 5J5HA 2X00D 2XQ5A 3UU4A 5AFLA 5L4HA 3TLUA 2XQ9A 1UX2A 4FRRA 4LMJA 3UU8A 2Y56A 4QH5A 3RQWA 3WTHA 2YMEA 2WNJA 2BG9C 4HFBA 4AFHA 4ZK1A 5BRXA 3ZDHA 5LXBA 4ILBA 4ZR6A 3WIPA 5TVCA 3RHWA 3U8LA 2Y58A 3SIOA 2ZJVA 4BFQA 3GUAA 3JADA 4D01A 5AFMA 5AFKA 2PH9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3P50 A;  4EZ1 A;  3EHZ A;  2BYQ A;  2UZ6 A;  5AFN A;  4AFT A;  2C9T A;  3LSV A;  4QH4 A;  5JME A;  2BG9 E;  4HFC A;  4HFH A;  4UM3 P;  4A98 A;  2XQ4 A;  5CO5 A;  4Z91 A;  3SQ9 A;  3UUB A;  3JAE A;  4UM1 A;  3WTM A;  2BYS A;  2BYN A;  3U8N A;  4ZRU A;  5J5F A;  2X00 A;  4TNV A;  3IGQ A;  2XQ6 A;  2XZ6 A;  4F8H A;  3C79 A;  5KZU A;  4TWD A;  3EAM A;  4IRE A;  4LML A;  3UU3 A;  5KE4 A;  2YN6 A;  4QH1 A;  2PGZ A;  5J5I A;  1UV6 A;  2W8F A;  3T4M A;  3U8K A;  5HCM A;  3WTI A;  4TNW A;  4A97 A;  2W8G A;  4COF A;  4TWH A;  2YMD A;  4WV9 A;  5FJV A;  2Y57 A;  4IL4 A;  3U8M A;  3SH1 A;  2BYR A;  2Y7Y A;  2BYP A;  4ZZB A;  4BQT A;  4DBM A;  2BR8 A;  3U8J A;  4ALX A;  4TWF A;  4PIR A;  4ILC A;  4QAC A;  2XQ3 A;  2BG9 A;  4LMK A;  1I9B A;  4HFI A;  2WZY A;  2XZ5 A;  3RQU A;  5L47 A;  2BG9 B;  4NPP A;  3TLW A;  2WN9 A;  3EI0 A;  4X5T A;  3TLT A;  3UQ4 A;  5BW2 A;  2XYS A;  4IL9 A;  4ZJS A;  5IUX A;  4ILA A;  3WTL A;  3RIA A;  2XNT A;  2XQ8 A;  5HEG A;  2XYT A;  2YKS A;  5HEU A;  3WTN A;  5AIN A;  4HQP A;  5SYO A;  3SQ6 A;  3WTJ A;  2Y54 A;  4XK9 A;  4UM3 S;  2VL0 A;  3P4W A;  5HEJ A;  3PEO A;  4UXU A;  2ZJU A;  2XNU A;  2WNC A;  5AFJ A;  3WTK A;  2XQA A;  3TLV A;  2YOE A;  4XHE A;  3UU5 A;  2XQ7 A;  2WNL A;  3WTO A;  3ZKR A;  5L4E A;  2BJ0 A;  3RIF A;  4QAB A;  3C84 A;  3PMZ A;  5AFH A;  5LG3 A;  4AFG A;  2BR7 A;  5AFM B;  1UW6 A;  3JAF A;  5J5G A;  4UM3 A;  3TLS A;  4ZK4 A;  3ZDG A;  4HFD A;  2QC1 B;  2XNV A;  4QAA A;  5BP0 A;  4ZZC A;  3RI5 A;  4NZB A;  4UY2 A;  4B5D A;  5J0Z A;  5HEO A;  3UU6 A;  4HFE A;  3UQ7 A;  5HCJ A;  5HEH A;  5CFB A;  4ZJT A;  4Z90 A;  5J5H A;  2X00 D;  2XQ5 A;  3UU4 A;  5AFL A;  5L4H A;  3TLU A;  2XQ9 A;  1UX2 A;  4FRR A;  4LMJ A;  3UU8 A;  2Y56 A;  4QH5 A;  3RQW A;  3WTH A;  2YME A;  2WNJ A;  2BG9 C;  4HFB A;  4AFH A;  4ZK1 A;  5BRX A;  3ZDH A;  5LXB A;  4ILB A;  4ZR6 A;  3WIP A;  5TVC A;  3RHW A;  3U8L A;  2Y58 A;  3SIO A;  2ZJV A;  4BFQ A;  3GUA A;  3JAD A;  4D01 A;  5AFM A;  5AFK A;  2PH9 A; 
#chains in the Genus database with same CATH topology
 3P50 A;  4EZ1 A;  3EHZ A;  2BYQ A;  2UZ6 A;  5AFN A;  4AFT A;  2C9T A;  3LSV A;  4QH4 A;  5JME A;  2BG9 E;  4HFC A;  4HFH A;  4UM3 P;  4A98 A;  2XQ4 A;  5CO5 A;  4Z91 A;  3SQ9 A;  3UUB A;  3JAE A;  4UM1 A;  3WTM A;  2BYS A;  2BYN A;  3U8N A;  4ZRU A;  5J5F A;  2X00 A;  4TNV A;  3IGQ A;  2XQ6 A;  2XZ6 A;  4F8H A;  3C79 A;  5KZU A;  4TWD A;  3EAM A;  4IRE A;  4LML A;  3UU3 A;  5KE4 A;  2YN6 A;  4QH1 A;  2PGZ A;  5J5I A;  1UV6 A;  2W8F A;  3T4M A;  3U8K A;  5HCM A;  3WTI A;  4TNW A;  4A97 A;  2W8G A;  4COF A;  4TWH A;  2YMD A;  4WV9 A;  5FJV A;  2Y57 A;  4IL4 A;  3U8M A;  3SH1 A;  2BYR A;  2Y7Y A;  2BYP A;  4ZZB A;  4BQT A;  4DBM A;  2BR8 A;  3U8J A;  4ALX A;  4TWF A;  4PIR A;  4ILC A;  4QAC A;  2XQ3 A;  2BG9 A;  4LMK A;  1I9B A;  4HFI A;  2WZY A;  2XZ5 A;  3RQU A;  5L47 A;  2BG9 B;  4NPP A;  3TLW A;  2WN9 A;  3EI0 A;  4X5T A;  3TLT A;  3UQ4 A;  5BW2 A;  2XYS A;  4IL9 A;  4ZJS A;  5IUX A;  4ILA A;  3WTL A;  3RIA A;  2XNT A;  2XQ8 A;  5HEG A;  2XYT A;  2YKS A;  5HEU A;  3WTN A;  5AIN A;  4HQP A;  5SYO A;  3SQ6 A;  3WTJ A;  2Y54 A;  4XK9 A;  4UM3 S;  2VL0 A;  3P4W A;  5HEJ A;  3PEO A;  4UXU A;  2ZJU A;  2XNU A;  2WNC A;  5AFJ A;  3WTK A;  2XQA A;  3TLV A;  2YOE A;  4XHE A;  3UU5 A;  2XQ7 A;  2WNL A;  3WTO A;  3ZKR A;  5L4E A;  2BJ0 A;  3RIF A;  4QAB A;  3C84 A;  3PMZ A;  5AFH A;  5LG3 A;  4AFG A;  2BR7 A;  5AFM B;  1UW6 A;  3JAF A;  5J5G A;  4UM3 A;  3TLS A;  4ZK4 A;  3ZDG A;  4HFD A;  2QC1 B;  2XNV A;  4QAA A;  5BP0 A;  4ZZC A;  3RI5 A;  4NZB A;  4UY2 A;  4B5D A;  5J0Z A;  5HEO A;  3UU6 A;  4HFE A;  3UQ7 A;  5HCJ A;  5HEH A;  5CFB A;  4ZJT A;  4Z90 A;  5J5H A;  2X00 D;  2XQ5 A;  3UU4 A;  5AFL A;  5L4H A;  3TLU A;  2XQ9 A;  1UX2 A;  4FRR A;  4LMJ A;  3UU8 A;  2Y56 A;  4QH5 A;  3RQW A;  3WTH A;  2YME A;  2WNJ A;  2BG9 C;  4HFB A;  4AFH A;  4ZK1 A;  5BRX A;  3ZDH A;  5LXB A;  4ILB A;  4ZR6 A;  3WIP A;  5TVC A;  3RHW A;  3U8L A;  2Y58 A;  3SIO A;  2ZJV A;  4BFQ A;  3GUA A;  3JAD A;  4D01 A;  5AFM A;  5AFK A;  2PH9 A; 
#chains in the Genus database with same CATH homology
 3P50 A;  4EZ1 A;  3EHZ A;  2BYQ A;  2UZ6 A;  5AFN A;  4AFT A;  2C9T A;  3LSV A;  4QH4 A;  5JME A;  2BG9 E;  4HFC A;  4HFH A;  4UM3 P;  4A98 A;  2XQ4 A;  5CO5 A;  4Z91 A;  3SQ9 A;  3UUB A;  3JAE A;  4UM1 A;  3WTM A;  2BYS A;  2BYN A;  3U8N A;  4ZRU A;  5J5F A;  2X00 A;  4TNV A;  3IGQ A;  2XQ6 A;  2XZ6 A;  4F8H A;  3C79 A;  5KZU A;  4TWD A;  3EAM A;  4IRE A;  4LML A;  3UU3 A;  5KE4 A;  2YN6 A;  4QH1 A;  2PGZ A;  5J5I A;  1UV6 A;  2W8F A;  3T4M A;  3U8K A;  5HCM A;  3WTI A;  4TNW A;  4A97 A;  2W8G A;  4COF A;  4TWH A;  2YMD A;  4WV9 A;  5FJV A;  2Y57 A;  4IL4 A;  3U8M A;  3SH1 A;  2BYR A;  2Y7Y A;  2BYP A;  4ZZB A;  4BQT A;  4DBM A;  2BR8 A;  3U8J A;  4ALX A;  4TWF A;  4PIR A;  4ILC A;  4QAC A;  2XQ3 A;  2BG9 A;  4LMK A;  1I9B A;  4HFI A;  2WZY A;  2XZ5 A;  3RQU A;  5L47 A;  2BG9 B;  4NPP A;  3TLW A;  2WN9 A;  3EI0 A;  4X5T A;  3TLT A;  3UQ4 A;  5BW2 A;  2XYS A;  4IL9 A;  4ZJS A;  5IUX A;  4ILA A;  3WTL A;  3RIA A;  2XNT A;  2XQ8 A;  5HEG A;  2XYT A;  2YKS A;  5HEU A;  3WTN A;  5AIN A;  4HQP A;  5SYO A;  3SQ6 A;  3WTJ A;  2Y54 A;  4XK9 A;  4UM3 S;  2VL0 A;  3P4W A;  5HEJ A;  3PEO A;  4UXU A;  2ZJU A;  2XNU A;  2WNC A;  5AFJ A;  3WTK A;  2XQA A;  3TLV A;  2YOE A;  4XHE A;  3UU5 A;  2XQ7 A;  2WNL A;  3WTO A;  3ZKR A;  5L4E A;  2BJ0 A;  3RIF A;  4QAB A;  3C84 A;  3PMZ A;  5AFH A;  5LG3 A;  4AFG A;  2BR7 A;  5AFM B;  1UW6 A;  3JAF A;  5J5G A;  4UM3 A;  3TLS A;  4ZK4 A;  3ZDG A;  4HFD A;  2QC1 B;  2XNV A;  4QAA A;  5BP0 A;  4ZZC A;  3RI5 A;  4NZB A;  4UY2 A;  4B5D A;  5J0Z A;  5HEO A;  3UU6 A;  4HFE A;  3UQ7 A;  5HCJ A;  5HEH A;  5CFB A;  4ZJT A;  4Z90 A;  5J5H A;  2X00 D;  2XQ5 A;  3UU4 A;  5AFL A;  5L4H A;  3TLU A;  2XQ9 A;  1UX2 A;  4FRR A;  4LMJ A;  3UU8 A;  2Y56 A;  4QH5 A;  3RQW A;  3WTH A;  2YME A;  2WNJ A;  2BG9 C;  4HFB A;  4AFH A;  4ZK1 A;  5BRX A;  3ZDH A;  5LXB A;  4ILB A;  4ZR6 A;  3WIP A;  5TVC A;  3RHW A;  3U8L A;  2Y58 A;  3SIO A;  2ZJV A;  4BFQ A;  3GUA A;  3JAD A;  4D01 A;  5AFM A;  5AFK A;  2PH9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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