5AFMB

Alpha7-achbp in complex with lobeline and fragment 4
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
207
structure length
207
Chain Sequence
b'GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKGRS'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Molecular Blueprint of Allosteric Binding Sites in a Homologue of the Agonist-Binding Domain of the Alpha7 Nicotinic Acetylcholine Receptor.
pubmed doi rcsb
molecule keywords ACETYLCHOLINE-BINDING PROTEIN, NEURONAL ACETYLCHOLINE RECEPT
source organism Homo sapiens
molecule tags Transport protein
total genus 41
structure length 207
sequence length 207
ec nomenclature
pdb deposition date 2015-01-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5afmB00
2XNUA 3C79A 3PEOA 3RI5A 5LXBA 3RIAA 2XZ5A 3SQ6A 5CFBA 4TWHA 4UM3S 5HEJA 3UQ4A 4UM3P 5JMEA 4XHEA 5L4HA 4QAAA 4IREA 2ZJVA 3ZDGA 4Z91A 4A98A 4LMLA 3TLWA 5BW2A 4A97A 4LMJA 4Z90A 5AINA 5AFKA 2WZYA 2YMEA 2Y56A 5HCJA 2W8FA 4UM3A 5BRXA 2BJ0A 2VL0A 4TWFA 3RHWA 3TLUA 5AFMA 3JADA 4HFIA 3U8LA 2XQ6A 3C84A 5HEHA 2QC1B 3TLSA 3UU6A 2W8GA 4PIRA 5AFLA 2BYQA 4ZJSA 3UQ7A 2WNCA 3WTOA 4HFDA 4NPPA 5BP0A 3WTIA 5HCMA 4XK9A 3SQ9A 2BG9C 2XQ4A 5KZUA 1I9BA 4ILBA 3GUAA 3U8JA 5AFJA 5HEUA 4HFEA 4ZR6A 2Y57A 2YN6A 3ZDHA 3U8MA 2XYSA 3ZKRA 2BG9A 3WTHA 4QH1A 4TNVA 3P4WA 3UU5A 4HFBA 2BYPA 5IUXA 3SH1A 3WTKA 3LSVA 3WTJA 3WIPA 3EI0A 2XQ3A 4TNWA 4AFGA 4UY2A 3UU4A 4NZBA 4ZK4A 2UZ6A 2Y54A 3WTMA 4D01A 4QACA 4ZRUA 3PMZA 4ZJTA 4COFA 4AFTA 3IGQA 2ZJUA 5J5GA 2PH9A 2BG9E 2XNVA 4IL9A 5LG3A 3SIOA 4ZZBA 3UU3A 1UX2A 4ILAA 2BR8A 1UW6A 2WNLA 3U8NA 2X00D 4BQTA 3WTLA 4LMKA 4IL4A 5L47A 5KE4A 2WN9A 2XYTA 4F8HA 4WV9A 5J5FA 4TWDA 5J5HA 4FRRA 2YMDA 3RQWA 5AFNA 2XQAA 2WNJA 4ZK1A 3UUBA 2Y7YA 2XQ8A 4HFHA 2XNTA 4X5TA 5HEGA 2YOEA 4DBMA 3T4MA 4HQPA 3TLTA 3TLVA 5J0ZA 3RIFA 2BR7A 4UM1A 1UV6A 2X00A 5SYOA 5TVCA 2YKSA 2BYNA 4ILCA 3RQUA 5L4EA 4UXUA 3EAMA 3U8KA 5AFHA 5AFMB 2PGZA 2BYRA 5J5IA 2XQ5A 2BG9B 4QABA 2BYSA 3P50A 4AFHA 3JAEA 2XQ9A 2XZ6A 2XQ7A 3EHZA 4QH5A 3UU8A 3WTNA 4B5DA 4BFQA 2Y58A 3JAFA 5FJVA 2C9TA 4ZZCA 4EZ1A 5CO5A 4QH4A 4HFCA 4ALXA 5HEOA
chains in the Genus database with same CATH superfamily
2XNUA 3C79A 3PEOA 3RI5A 5LXBA 3RIAA 2XZ5A 3SQ6A 5CFBA 4TWHA 4UM3S 5HEJA 3UQ4A 4UM3P 5JMEA 4XHEA 5L4HA 4QAAA 4IREA 2ZJVA 3ZDGA 4Z91A 4A98A 4LMLA 3TLWA 5BW2A 4A97A 4LMJA 4Z90A 5AINA 5AFKA 2WZYA 2YMEA 2Y56A 5HCJA 2W8FA 4UM3A 5BRXA 2BJ0A 2VL0A 4TWFA 3RHWA 3TLUA 5AFMA 3JADA 4HFIA 3U8LA 2XQ6A 3C84A 5HEHA 2QC1B 3TLSA 3UU6A 2W8GA 4PIRA 5AFLA 2BYQA 4ZJSA 3UQ7A 2WNCA 3WTOA 4HFDA 4NPPA 5BP0A 3WTIA 5HCMA 4XK9A 3SQ9A 2BG9C 2XQ4A 5KZUA 1I9BA 4ILBA 3GUAA 3U8JA 5AFJA 5HEUA 4HFEA 4ZR6A 2Y57A 2YN6A 3ZDHA 3U8MA 2XYSA 3ZKRA 2BG9A 3WTHA 4QH1A 4TNVA 3P4WA 3UU5A 4HFBA 2BYPA 5IUXA 3SH1A 3WTKA 3LSVA 3WTJA 3WIPA 3EI0A 2XQ3A 4TNWA 4AFGA 4UY2A 3UU4A 4NZBA 4ZK4A 2UZ6A 2Y54A 3WTMA 4D01A 4QACA 4ZRUA 3PMZA 4ZJTA 4COFA 4AFTA 3IGQA 2ZJUA 5J5GA 2PH9A 2BG9E 2XNVA 4IL9A 5LG3A 3SIOA 4ZZBA 3UU3A 1UX2A 4ILAA 2BR8A 1UW6A 2WNLA 3U8NA 2X00D 4BQTA 3WTLA 4LMKA 4IL4A 5L47A 5KE4A 2WN9A 2XYTA 4F8HA 4WV9A 5J5FA 4TWDA 5J5HA 4FRRA 2YMDA 3RQWA 5AFNA 2XQAA 2WNJA 4ZK1A 3UUBA 2Y7YA 2XQ8A 4HFHA 2XNTA 4X5TA 5HEGA 2YOEA 4DBMA 3T4MA 4HQPA 3TLTA 3TLVA 5J0ZA 3RIFA 2BR7A 4UM1A 1UV6A 2X00A 5SYOA 5TVCA 2YKSA 2BYNA 4ILCA 3RQUA 5L4EA 4UXUA 3EAMA 3U8KA 5AFHA 5AFMB 2PGZA 2BYRA 5J5IA 2XQ5A 2BG9B 4QABA 2BYSA 3P50A 4AFHA 3JAEA 2XQ9A 2XZ6A 2XQ7A 3EHZA 4QH5A 3UU8A 3WTNA 4B5DA 4BFQA 2Y58A 3JAFA 5FJVA 2C9TA 4ZZCA 4EZ1A 5CO5A 4QH4A 4HFCA 4ALXA 5HEOA
chains in the Genus database with same CATH topology
2XNUA 3C79A 3PEOA 3RI5A 5LXBA 3RIAA 2XZ5A 3SQ6A 5CFBA 4TWHA 4UM3S 5HEJA 3UQ4A 4UM3P 5JMEA 4XHEA 5L4HA 4QAAA 4IREA 2ZJVA 3ZDGA 4Z91A 4A98A 4LMLA 3TLWA 5BW2A 4A97A 4LMJA 4Z90A 5AINA 5AFKA 2WZYA 2YMEA 2Y56A 5HCJA 2W8FA 4UM3A 5BRXA 2BJ0A 2VL0A 4TWFA 3RHWA 3TLUA 5AFMA 3JADA 4HFIA 3U8LA 2XQ6A 3C84A 5HEHA 2QC1B 3TLSA 3UU6A 2W8GA 4PIRA 5AFLA 2BYQA 4ZJSA 3UQ7A 2WNCA 3WTOA 4HFDA 4NPPA 5BP0A 3WTIA 5HCMA 4XK9A 3SQ9A 2BG9C 2XQ4A 5KZUA 1I9BA 4ILBA 3GUAA 3U8JA 5AFJA 5HEUA 4HFEA 4ZR6A 2Y57A 2YN6A 3ZDHA 3U8MA 2XYSA 3ZKRA 2BG9A 3WTHA 4QH1A 4TNVA 3P4WA 3UU5A 4HFBA 2BYPA 5IUXA 3SH1A 3WTKA 3LSVA 3WTJA 3WIPA 3EI0A 2XQ3A 4TNWA 4AFGA 4UY2A 3UU4A 4NZBA 4ZK4A 2UZ6A 2Y54A 3WTMA 4D01A 4QACA 4ZRUA 3PMZA 4ZJTA 4COFA 4AFTA 3IGQA 2ZJUA 5J5GA 2PH9A 2BG9E 2XNVA 4IL9A 5LG3A 3SIOA 4ZZBA 3UU3A 1UX2A 4ILAA 2BR8A 1UW6A 2WNLA 3U8NA 2X00D 4BQTA 3WTLA 4LMKA 4IL4A 5L47A 5KE4A 2WN9A 2XYTA 4F8HA 4WV9A 5J5FA 4TWDA 5J5HA 4FRRA 2YMDA 3RQWA 5AFNA 2XQAA 2WNJA 4ZK1A 3UUBA 2Y7YA 2XQ8A 4HFHA 2XNTA 4X5TA 5HEGA 2YOEA 4DBMA 3T4MA 4HQPA 3TLTA 3TLVA 5J0ZA 3RIFA 2BR7A 4UM1A 1UV6A 2X00A 5SYOA 5TVCA 2YKSA 2BYNA 4ILCA 3RQUA 5L4EA 4UXUA 3EAMA 3U8KA 5AFHA 5AFMB 2PGZA 2BYRA 5J5IA 2XQ5A 2BG9B 4QABA 2BYSA 3P50A 4AFHA 3JAEA 2XQ9A 2XZ6A 2XQ7A 3EHZA 4QH5A 3UU8A 3WTNA 4B5DA 4BFQA 2Y58A 3JAFA 5FJVA 2C9TA 4ZZCA 4EZ1A 5CO5A 4QH4A 4HFCA 4ALXA 5HEOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XNU A;  3C79 A;  3PEO A;  3RI5 A;  5LXB A;  3RIA A;  2XZ5 A;  3SQ6 A;  5CFB A;  4TWH A;  4UM3 S;  5HEJ A;  3UQ4 A;  4UM3 P;  5JME A;  4XHE A;  5L4H A;  4QAA A;  4IRE A;  2ZJV A;  3ZDG A;  4Z91 A;  4A98 A;  4LML A;  3TLW A;  5BW2 A;  4A97 A;  4LMJ A;  4Z90 A;  5AIN A;  5AFK A;  2WZY A;  2YME A;  2Y56 A;  5HCJ A;  2W8F A;  4UM3 A;  5BRX A;  2BJ0 A;  2VL0 A;  4TWF A;  3RHW A;  3TLU A;  5AFM A;  3JAD A;  4HFI A;  3U8L A;  2XQ6 A;  3C84 A;  5HEH A;  2QC1 B;  3TLS A;  3UU6 A;  2W8G A;  4PIR A;  5AFL A;  2BYQ A;  4ZJS A;  3UQ7 A;  2WNC A;  3WTO A;  4HFD A;  4NPP A;  5BP0 A;  3WTI A;  5HCM A;  4XK9 A;  3SQ9 A;  2BG9 C;  2XQ4 A;  5KZU A;  1I9B A;  4ILB A;  3GUA A;  3U8J A;  5AFJ A;  5HEU A;  4HFE A;  4ZR6 A;  2Y57 A;  2YN6 A;  3ZDH A;  3U8M A;  2XYS A;  3ZKR A;  2BG9 A;  3WTH A;  4QH1 A;  4TNV A;  3P4W A;  3UU5 A;  4HFB A;  2BYP A;  5IUX A;  3SH1 A;  3WTK A;  3LSV A;  3WTJ A;  3WIP A;  3EI0 A;  2XQ3 A;  4TNW A;  4AFG A;  4UY2 A;  3UU4 A;  4NZB A;  4ZK4 A;  2UZ6 A;  2Y54 A;  3WTM A;  4D01 A;  4QAC A;  4ZRU A;  3PMZ A;  4ZJT A;  4COF A;  4AFT A;  3IGQ A;  2ZJU A;  5J5G A;  2PH9 A;  2BG9 E;  2XNV A;  4IL9 A;  5LG3 A;  3SIO A;  4ZZB A;  3UU3 A;  1UX2 A;  4ILA A;  2BR8 A;  1UW6 A;  2WNL A;  3U8N A;  2X00 D;  4BQT A;  3WTL A;  4LMK A;  4IL4 A;  5L47 A;  5KE4 A;  2WN9 A;  2XYT A;  4F8H A;  4WV9 A;  5J5F A;  4TWD A;  5J5H A;  4FRR A;  2YMD A;  3RQW A;  5AFN A;  2XQA A;  2WNJ A;  4ZK1 A;  3UUB A;  2Y7Y A;  2XQ8 A;  4HFH A;  2XNT A;  4X5T A;  5HEG A;  2YOE A;  4DBM A;  3T4M A;  4HQP A;  3TLT A;  3TLV A;  5J0Z A;  3RIF A;  2BR7 A;  4UM1 A;  1UV6 A;  2X00 A;  5SYO A;  5TVC A;  2YKS A;  2BYN A;  4ILC A;  3RQU A;  5L4E A;  4UXU A;  3EAM A;  3U8K A;  5AFH A;  5AFM B;  2PGZ A;  2BYR A;  5J5I A;  2XQ5 A;  2BG9 B;  4QAB A;  2BYS A;  3P50 A;  4AFH A;  3JAE A;  2XQ9 A;  2XZ6 A;  2XQ7 A;  3EHZ A;  4QH5 A;  3UU8 A;  3WTN A;  4B5D A;  4BFQ A;  2Y58 A;  3JAF A;  5FJV A;  2C9T A;  4ZZC A;  4EZ1 A;  5CO5 A;  4QH4 A;  4HFC A;  4ALX A;  5HEO A; 
#chains in the Genus database with same CATH topology
 2XNU A;  3C79 A;  3PEO A;  3RI5 A;  5LXB A;  3RIA A;  2XZ5 A;  3SQ6 A;  5CFB A;  4TWH A;  4UM3 S;  5HEJ A;  3UQ4 A;  4UM3 P;  5JME A;  4XHE A;  5L4H A;  4QAA A;  4IRE A;  2ZJV A;  3ZDG A;  4Z91 A;  4A98 A;  4LML A;  3TLW A;  5BW2 A;  4A97 A;  4LMJ A;  4Z90 A;  5AIN A;  5AFK A;  2WZY A;  2YME A;  2Y56 A;  5HCJ A;  2W8F A;  4UM3 A;  5BRX A;  2BJ0 A;  2VL0 A;  4TWF A;  3RHW A;  3TLU A;  5AFM A;  3JAD A;  4HFI A;  3U8L A;  2XQ6 A;  3C84 A;  5HEH A;  2QC1 B;  3TLS A;  3UU6 A;  2W8G A;  4PIR A;  5AFL A;  2BYQ A;  4ZJS A;  3UQ7 A;  2WNC A;  3WTO A;  4HFD A;  4NPP A;  5BP0 A;  3WTI A;  5HCM A;  4XK9 A;  3SQ9 A;  2BG9 C;  2XQ4 A;  5KZU A;  1I9B A;  4ILB A;  3GUA A;  3U8J A;  5AFJ A;  5HEU A;  4HFE A;  4ZR6 A;  2Y57 A;  2YN6 A;  3ZDH A;  3U8M A;  2XYS A;  3ZKR A;  2BG9 A;  3WTH A;  4QH1 A;  4TNV A;  3P4W A;  3UU5 A;  4HFB A;  2BYP A;  5IUX A;  3SH1 A;  3WTK A;  3LSV A;  3WTJ A;  3WIP A;  3EI0 A;  2XQ3 A;  4TNW A;  4AFG A;  4UY2 A;  3UU4 A;  4NZB A;  4ZK4 A;  2UZ6 A;  2Y54 A;  3WTM A;  4D01 A;  4QAC A;  4ZRU A;  3PMZ A;  4ZJT A;  4COF A;  4AFT A;  3IGQ A;  2ZJU A;  5J5G A;  2PH9 A;  2BG9 E;  2XNV A;  4IL9 A;  5LG3 A;  3SIO A;  4ZZB A;  3UU3 A;  1UX2 A;  4ILA A;  2BR8 A;  1UW6 A;  2WNL A;  3U8N A;  2X00 D;  4BQT A;  3WTL A;  4LMK A;  4IL4 A;  5L47 A;  5KE4 A;  2WN9 A;  2XYT A;  4F8H A;  4WV9 A;  5J5F A;  4TWD A;  5J5H A;  4FRR A;  2YMD A;  3RQW A;  5AFN A;  2XQA A;  2WNJ A;  4ZK1 A;  3UUB A;  2Y7Y A;  2XQ8 A;  4HFH A;  2XNT A;  4X5T A;  5HEG A;  2YOE A;  4DBM A;  3T4M A;  4HQP A;  3TLT A;  3TLV A;  5J0Z A;  3RIF A;  2BR7 A;  4UM1 A;  1UV6 A;  2X00 A;  5SYO A;  5TVC A;  2YKS A;  2BYN A;  4ILC A;  3RQU A;  5L4E A;  4UXU A;  3EAM A;  3U8K A;  5AFH A;  5AFM B;  2PGZ A;  2BYR A;  5J5I A;  2XQ5 A;  2BG9 B;  4QAB A;  2BYS A;  3P50 A;  4AFH A;  3JAE A;  2XQ9 A;  2XZ6 A;  2XQ7 A;  3EHZ A;  4QH5 A;  3UU8 A;  3WTN A;  4B5D A;  4BFQ A;  2Y58 A;  3JAF A;  5FJV A;  2C9T A;  4ZZC A;  4EZ1 A;  5CO5 A;  4QH4 A;  4HFC A;  4ALX A;  5HEO A; 
#chains in the Genus database with same CATH homology
 2XNU A;  3C79 A;  3PEO A;  3RI5 A;  5LXB A;  3RIA A;  2XZ5 A;  3SQ6 A;  5CFB A;  4TWH A;  4UM3 S;  5HEJ A;  3UQ4 A;  4UM3 P;  5JME A;  4XHE A;  5L4H A;  4QAA A;  4IRE A;  2ZJV A;  3ZDG A;  4Z91 A;  4A98 A;  4LML A;  3TLW A;  5BW2 A;  4A97 A;  4LMJ A;  4Z90 A;  5AIN A;  5AFK A;  2WZY A;  2YME A;  2Y56 A;  5HCJ A;  2W8F A;  4UM3 A;  5BRX A;  2BJ0 A;  2VL0 A;  4TWF A;  3RHW A;  3TLU A;  5AFM A;  3JAD A;  4HFI A;  3U8L A;  2XQ6 A;  3C84 A;  5HEH A;  2QC1 B;  3TLS A;  3UU6 A;  2W8G A;  4PIR A;  5AFL A;  2BYQ A;  4ZJS A;  3UQ7 A;  2WNC A;  3WTO A;  4HFD A;  4NPP A;  5BP0 A;  3WTI A;  5HCM A;  4XK9 A;  3SQ9 A;  2BG9 C;  2XQ4 A;  5KZU A;  1I9B A;  4ILB A;  3GUA A;  3U8J A;  5AFJ A;  5HEU A;  4HFE A;  4ZR6 A;  2Y57 A;  2YN6 A;  3ZDH A;  3U8M A;  2XYS A;  3ZKR A;  2BG9 A;  3WTH A;  4QH1 A;  4TNV A;  3P4W A;  3UU5 A;  4HFB A;  2BYP A;  5IUX A;  3SH1 A;  3WTK A;  3LSV A;  3WTJ A;  3WIP A;  3EI0 A;  2XQ3 A;  4TNW A;  4AFG A;  4UY2 A;  3UU4 A;  4NZB A;  4ZK4 A;  2UZ6 A;  2Y54 A;  3WTM A;  4D01 A;  4QAC A;  4ZRU A;  3PMZ A;  4ZJT A;  4COF A;  4AFT A;  3IGQ A;  2ZJU A;  5J5G A;  2PH9 A;  2BG9 E;  2XNV A;  4IL9 A;  5LG3 A;  3SIO A;  4ZZB A;  3UU3 A;  1UX2 A;  4ILA A;  2BR8 A;  1UW6 A;  2WNL A;  3U8N A;  2X00 D;  4BQT A;  3WTL A;  4LMK A;  4IL4 A;  5L47 A;  5KE4 A;  2WN9 A;  2XYT A;  4F8H A;  4WV9 A;  5J5F A;  4TWD A;  5J5H A;  4FRR A;  2YMD A;  3RQW A;  5AFN A;  2XQA A;  2WNJ A;  4ZK1 A;  3UUB A;  2Y7Y A;  2XQ8 A;  4HFH A;  2XNT A;  4X5T A;  5HEG A;  2YOE A;  4DBM A;  3T4M A;  4HQP A;  3TLT A;  3TLV A;  5J0Z A;  3RIF A;  2BR7 A;  4UM1 A;  1UV6 A;  2X00 A;  5SYO A;  5TVC A;  2YKS A;  2BYN A;  4ILC A;  3RQU A;  5L4E A;  4UXU A;  3EAM A;  3U8K A;  5AFH A;  5AFM B;  2PGZ A;  2BYR A;  5J5I A;  2XQ5 A;  2BG9 B;  4QAB A;  2BYS A;  3P50 A;  4AFH A;  3JAE A;  2XQ9 A;  2XZ6 A;  2XQ7 A;  3EHZ A;  4QH5 A;  3UU8 A;  3WTN A;  4B5D A;  4BFQ A;  2Y58 A;  3JAF A;  5FJV A;  2C9T A;  4ZZC A;  4EZ1 A;  5CO5 A;  4QH4 A;  4HFC A;  4ALX A;  5HEO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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