5AFNA

Alpha7-achbp in complex with lobeline and fragment 5
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
205
structure length
205
Chain Sequence
GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
source organism Homo sapiens
publication title Molecular Blueprint of Allosteric Binding Sites in a Homologue of the Agonist-Binding Domain of the Alpha7 Nicotinic Acetylcholine Receptor.
pubmed doi rcsb
molecule keywords ACETYLCHOLINE-BINDING PROTEIN, NEURONAL ACETYLCHOLINE RECEPT
total genus 46
structure length 205
sequence length 205
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2015-01-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5afnA00
3JAEA 4TNVA 3PEOA 2XQ5A 3RIFA 2WN9A 4IL4A 2BG9E 4QAAA 3UU4A 3UQ4A 4UM3A 2W8GA 2X00D 2XQ6A 3LSVA 2Y58A 2BG9A 2WNLA 3U8NA 3WIPA 2YMDA 5HCMA 4TWHA 3RQUA 3UU3A 2XNTA 3TLTA 3ZDGA 5AFHA 3TLWA 5AINA 3TLUA 3PMZA 4Z91A 4QH4A 3WTKA 3ZDHA 3U8JA 2XYSA 2PGZA 5BP0A 4ZZBA 4XK9A 4HFHA 5BRXA 4NPPA 1UW6A 2QC1B 5AFLA 5AFKA 4A98A 4DBMA 3WTOA 2XQAA 2ZJUA 5SYOA 3WTIA 2XQ4A 1UV6A 5L4HA 4UM3S 5HEGA 4IL9A 4ZJSA 2YN6A 2BYNA 4QACA 5TVCA 4COFA 5L47A 2BR7A 2WZYA 4ZK1A 4F8HA 5JMEA 3P50A 2Y7YA 3ZKRA 3U8LA 3UU5A 2XYTA 3C84A 2WNJA 5HEOA 5BW2A 4LMKA 2WNCA 2YKSA 3TLVA 3UU6A 2UZ6A 4X5TA 4ZK4A 4HFCA 2C9TA 4ILCA 3WTNA 5CO5A 4QABA 4LMLA 4AFGA 2XZ5A 4ILAA 5FJVA 2BYSA 3EI0A 3P4WA 2XZ6A 2Y57A 5J5GA 3RQWA 2BYQA 5IUXA 5HEHA 4Z90A 4ZRUA 3UU8A 4UM1A 2VL0A 2YMEA 3T4MA 2XNVA 4HQPA 5AFMA 4UM3P 2BYRA 5J5HA 2XNUA 2BR8A 4PIRA 3SQ9A 3WTMA 3GUAA 5CFBA 3WTLA 5HEUA 2XQ7A 5HEJA 4NZBA 4TWFA 3SIOA 4QH5A 5AFJA 4ZZCA 3TLSA 2BG9B 5KZUA 3WTHA 4ILBA 5AFNA 4LMJA 4ZJTA 2XQ3A 3RIAA 3RHWA 2XQ8A 3JADA 4ALXA 4D01A 2ZJVA 4HFIA 3C79A 4HFEA 4IREA 3WTJA 3SH1A 2Y56A 4HFBA 2BG9C 5J5FA 5LG3A 3RI5A 4BQTA 5J5IA 4B5DA 2BYPA 3UUBA 4AFHA 4UY2A 2W8FA 2BJ0A 4TNWA 4XHEA 5KE4A 4HFDA 3SQ6A 4UXUA 4WV9A 4AFTA 5L4EA 1UX2A 2XQ9A 4BFQA 4TWDA 3U8MA 5HCJA 5LXBA 2PH9A 3UQ7A 1I9BA 2YOEA 4QH1A 3U8KA 4A97A 2X00A 5J0ZA 2Y54A 4FRRA 5AFMB 3IGQA 4EZ1A 3JAFA 4ZR6A 3EAMA 3EHZA
chains in the Genus database with same CATH superfamily
3JAEA 4TNVA 3PEOA 2XQ5A 3RIFA 2WN9A 4IL4A 2BG9E 4QAAA 3UU4A 3UQ4A 4UM3A 2W8GA 2X00D 2XQ6A 3LSVA 2Y58A 2BG9A 2WNLA 3U8NA 3WIPA 2YMDA 5HCMA 4TWHA 3RQUA 3UU3A 2XNTA 3TLTA 3ZDGA 5AFHA 3TLWA 5AINA 3TLUA 3PMZA 4Z91A 4QH4A 3WTKA 3ZDHA 3U8JA 2XYSA 2PGZA 5BP0A 4ZZBA 4XK9A 4HFHA 5BRXA 4NPPA 1UW6A 2QC1B 5AFLA 5AFKA 4A98A 4DBMA 3WTOA 2XQAA 2ZJUA 5SYOA 3WTIA 2XQ4A 1UV6A 5L4HA 4UM3S 5HEGA 4IL9A 4ZJSA 2YN6A 2BYNA 4QACA 5TVCA 4COFA 5L47A 2BR7A 2WZYA 4ZK1A 4F8HA 5JMEA 3P50A 2Y7YA 3ZKRA 3U8LA 3UU5A 2XYTA 3C84A 2WNJA 5HEOA 5BW2A 4LMKA 2WNCA 2YKSA 3TLVA 3UU6A 2UZ6A 4X5TA 4ZK4A 4HFCA 2C9TA 4ILCA 3WTNA 5CO5A 4QABA 4LMLA 4AFGA 2XZ5A 4ILAA 5FJVA 2BYSA 3EI0A 3P4WA 2XZ6A 2Y57A 5J5GA 3RQWA 2BYQA 5IUXA 5HEHA 4Z90A 4ZRUA 3UU8A 4UM1A 2VL0A 2YMEA 3T4MA 2XNVA 4HQPA 5AFMA 4UM3P 2BYRA 5J5HA 2XNUA 2BR8A 4PIRA 3SQ9A 3WTMA 3GUAA 5CFBA 3WTLA 5HEUA 2XQ7A 5HEJA 4NZBA 4TWFA 3SIOA 4QH5A 5AFJA 4ZZCA 3TLSA 2BG9B 5KZUA 3WTHA 4ILBA 5AFNA 4LMJA 4ZJTA 2XQ3A 3RIAA 3RHWA 2XQ8A 3JADA 4ALXA 4D01A 2ZJVA 4HFIA 3C79A 4HFEA 4IREA 3WTJA 3SH1A 2Y56A 4HFBA 2BG9C 5J5FA 5LG3A 3RI5A 4BQTA 5J5IA 4B5DA 2BYPA 3UUBA 4AFHA 4UY2A 2W8FA 2BJ0A 4TNWA 4XHEA 5KE4A 4HFDA 3SQ6A 4UXUA 4WV9A 4AFTA 5L4EA 1UX2A 2XQ9A 4BFQA 4TWDA 3U8MA 5HCJA 5LXBA 2PH9A 3UQ7A 1I9BA 2YOEA 4QH1A 3U8KA 4A97A 2X00A 5J0ZA 2Y54A 4FRRA 5AFMB 3IGQA 4EZ1A 3JAFA 4ZR6A 3EAMA 3EHZA
chains in the Genus database with same CATH topology
3JAEA 4TNVA 3PEOA 2XQ5A 3RIFA 2WN9A 4IL4A 2BG9E 4QAAA 3UU4A 3UQ4A 4UM3A 2W8GA 2X00D 2XQ6A 3LSVA 2Y58A 2BG9A 2WNLA 3U8NA 3WIPA 2YMDA 5HCMA 4TWHA 3RQUA 3UU3A 2XNTA 3TLTA 3ZDGA 5AFHA 3TLWA 5AINA 3TLUA 3PMZA 4Z91A 4QH4A 3WTKA 3ZDHA 3U8JA 2XYSA 2PGZA 5BP0A 4ZZBA 4XK9A 4HFHA 5BRXA 4NPPA 1UW6A 2QC1B 5AFLA 5AFKA 4A98A 4DBMA 3WTOA 2XQAA 2ZJUA 5SYOA 3WTIA 2XQ4A 1UV6A 5L4HA 4UM3S 5HEGA 4IL9A 4ZJSA 2YN6A 2BYNA 4QACA 5TVCA 4COFA 5L47A 2BR7A 2WZYA 4ZK1A 4F8HA 5JMEA 3P50A 2Y7YA 3ZKRA 3U8LA 3UU5A 2XYTA 3C84A 2WNJA 5HEOA 5BW2A 4LMKA 2WNCA 2YKSA 3TLVA 3UU6A 2UZ6A 4X5TA 4ZK4A 4HFCA 2C9TA 4ILCA 3WTNA 5CO5A 4QABA 4LMLA 4AFGA 2XZ5A 4ILAA 5FJVA 2BYSA 3EI0A 3P4WA 2XZ6A 2Y57A 5J5GA 3RQWA 2BYQA 5IUXA 5HEHA 4Z90A 4ZRUA 3UU8A 4UM1A 2VL0A 2YMEA 3T4MA 2XNVA 4HQPA 5AFMA 4UM3P 2BYRA 5J5HA 2XNUA 2BR8A 4PIRA 3SQ9A 3WTMA 3GUAA 5CFBA 3WTLA 5HEUA 2XQ7A 5HEJA 4NZBA 4TWFA 3SIOA 4QH5A 5AFJA 4ZZCA 3TLSA 2BG9B 5KZUA 3WTHA 4ILBA 5AFNA 4LMJA 4ZJTA 2XQ3A 3RIAA 3RHWA 2XQ8A 3JADA 4ALXA 4D01A 2ZJVA 4HFIA 3C79A 4HFEA 4IREA 3WTJA 3SH1A 2Y56A 4HFBA 2BG9C 5J5FA 5LG3A 3RI5A 4BQTA 5J5IA 4B5DA 2BYPA 3UUBA 4AFHA 4UY2A 2W8FA 2BJ0A 4TNWA 4XHEA 5KE4A 4HFDA 3SQ6A 4UXUA 4WV9A 4AFTA 5L4EA 1UX2A 2XQ9A 4BFQA 4TWDA 3U8MA 5HCJA 5LXBA 2PH9A 3UQ7A 1I9BA 2YOEA 4QH1A 3U8KA 4A97A 2X00A 5J0ZA 2Y54A 4FRRA 5AFMB 3IGQA 4EZ1A 3JAFA 4ZR6A 3EAMA 3EHZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JAE A;  4TNV A;  3PEO A;  2XQ5 A;  3RIF A;  2WN9 A;  4IL4 A;  2BG9 E;  4QAA A;  3UU4 A;  3UQ4 A;  4UM3 A;  2W8G A;  2X00 D;  2XQ6 A;  3LSV A;  2Y58 A;  2BG9 A;  2WNL A;  3U8N A;  3WIP A;  2YMD A;  5HCM A;  4TWH A;  3RQU A;  3UU3 A;  2XNT A;  3TLT A;  3ZDG A;  5AFH A;  3TLW A;  5AIN A;  3TLU A;  3PMZ A;  4Z91 A;  4QH4 A;  3WTK A;  3ZDH A;  3U8J A;  2XYS A;  2PGZ A;  5BP0 A;  4ZZB A;  4XK9 A;  4HFH A;  5BRX A;  4NPP A;  1UW6 A;  2QC1 B;  5AFL A;  5AFK A;  4A98 A;  4DBM A;  3WTO A;  2XQA A;  2ZJU A;  5SYO A;  3WTI A;  2XQ4 A;  1UV6 A;  5L4H A;  4UM3 S;  5HEG A;  4IL9 A;  4ZJS A;  2YN6 A;  2BYN A;  4QAC A;  5TVC A;  4COF A;  5L47 A;  2BR7 A;  2WZY A;  4ZK1 A;  4F8H A;  5JME A;  3P50 A;  2Y7Y A;  3ZKR A;  3U8L A;  3UU5 A;  2XYT A;  3C84 A;  2WNJ A;  5HEO A;  5BW2 A;  4LMK A;  2WNC A;  2YKS A;  3TLV A;  3UU6 A;  2UZ6 A;  4X5T A;  4ZK4 A;  4HFC A;  2C9T A;  4ILC A;  3WTN A;  5CO5 A;  4QAB A;  4LML A;  4AFG A;  2XZ5 A;  4ILA A;  5FJV A;  2BYS A;  3EI0 A;  3P4W A;  2XZ6 A;  2Y57 A;  5J5G A;  3RQW A;  2BYQ A;  5IUX A;  5HEH A;  4Z90 A;  4ZRU A;  3UU8 A;  4UM1 A;  2VL0 A;  2YME A;  3T4M A;  2XNV A;  4HQP A;  5AFM A;  4UM3 P;  2BYR A;  5J5H A;  2XNU A;  2BR8 A;  4PIR A;  3SQ9 A;  3WTM A;  3GUA A;  5CFB A;  3WTL A;  5HEU A;  2XQ7 A;  5HEJ A;  4NZB A;  4TWF A;  3SIO A;  4QH5 A;  5AFJ A;  4ZZC A;  3TLS A;  2BG9 B;  5KZU A;  3WTH A;  4ILB A;  5AFN A;  4LMJ A;  4ZJT A;  2XQ3 A;  3RIA A;  3RHW A;  2XQ8 A;  3JAD A;  4ALX A;  4D01 A;  2ZJV A;  4HFI A;  3C79 A;  4HFE A;  4IRE A;  3WTJ A;  3SH1 A;  2Y56 A;  4HFB A;  2BG9 C;  5J5F A;  5LG3 A;  3RI5 A;  4BQT A;  5J5I A;  4B5D A;  2BYP A;  3UUB A;  4AFH A;  4UY2 A;  2W8F A;  2BJ0 A;  4TNW A;  4XHE A;  5KE4 A;  4HFD A;  3SQ6 A;  4UXU A;  4WV9 A;  4AFT A;  5L4E A;  1UX2 A;  2XQ9 A;  4BFQ A;  4TWD A;  3U8M A;  5HCJ A;  5LXB A;  2PH9 A;  3UQ7 A;  1I9B A;  2YOE A;  4QH1 A;  3U8K A;  4A97 A;  2X00 A;  5J0Z A;  2Y54 A;  4FRR A;  5AFM B;  3IGQ A;  4EZ1 A;  3JAF A;  4ZR6 A;  3EAM A;  3EHZ A; 
#chains in the Genus database with same CATH topology
 3JAE A;  4TNV A;  3PEO A;  2XQ5 A;  3RIF A;  2WN9 A;  4IL4 A;  2BG9 E;  4QAA A;  3UU4 A;  3UQ4 A;  4UM3 A;  2W8G A;  2X00 D;  2XQ6 A;  3LSV A;  2Y58 A;  2BG9 A;  2WNL A;  3U8N A;  3WIP A;  2YMD A;  5HCM A;  4TWH A;  3RQU A;  3UU3 A;  2XNT A;  3TLT A;  3ZDG A;  5AFH A;  3TLW A;  5AIN A;  3TLU A;  3PMZ A;  4Z91 A;  4QH4 A;  3WTK A;  3ZDH A;  3U8J A;  2XYS A;  2PGZ A;  5BP0 A;  4ZZB A;  4XK9 A;  4HFH A;  5BRX A;  4NPP A;  1UW6 A;  2QC1 B;  5AFL A;  5AFK A;  4A98 A;  4DBM A;  3WTO A;  2XQA A;  2ZJU A;  5SYO A;  3WTI A;  2XQ4 A;  1UV6 A;  5L4H A;  4UM3 S;  5HEG A;  4IL9 A;  4ZJS A;  2YN6 A;  2BYN A;  4QAC A;  5TVC A;  4COF A;  5L47 A;  2BR7 A;  2WZY A;  4ZK1 A;  4F8H A;  5JME A;  3P50 A;  2Y7Y A;  3ZKR A;  3U8L A;  3UU5 A;  2XYT A;  3C84 A;  2WNJ A;  5HEO A;  5BW2 A;  4LMK A;  2WNC A;  2YKS A;  3TLV A;  3UU6 A;  2UZ6 A;  4X5T A;  4ZK4 A;  4HFC A;  2C9T A;  4ILC A;  3WTN A;  5CO5 A;  4QAB A;  4LML A;  4AFG A;  2XZ5 A;  4ILA A;  5FJV A;  2BYS A;  3EI0 A;  3P4W A;  2XZ6 A;  2Y57 A;  5J5G A;  3RQW A;  2BYQ A;  5IUX A;  5HEH A;  4Z90 A;  4ZRU A;  3UU8 A;  4UM1 A;  2VL0 A;  2YME A;  3T4M A;  2XNV A;  4HQP A;  5AFM A;  4UM3 P;  2BYR A;  5J5H A;  2XNU A;  2BR8 A;  4PIR A;  3SQ9 A;  3WTM A;  3GUA A;  5CFB A;  3WTL A;  5HEU A;  2XQ7 A;  5HEJ A;  4NZB A;  4TWF A;  3SIO A;  4QH5 A;  5AFJ A;  4ZZC A;  3TLS A;  2BG9 B;  5KZU A;  3WTH A;  4ILB A;  5AFN A;  4LMJ A;  4ZJT A;  2XQ3 A;  3RIA A;  3RHW A;  2XQ8 A;  3JAD A;  4ALX A;  4D01 A;  2ZJV A;  4HFI A;  3C79 A;  4HFE A;  4IRE A;  3WTJ A;  3SH1 A;  2Y56 A;  4HFB A;  2BG9 C;  5J5F A;  5LG3 A;  3RI5 A;  4BQT A;  5J5I A;  4B5D A;  2BYP A;  3UUB A;  4AFH A;  4UY2 A;  2W8F A;  2BJ0 A;  4TNW A;  4XHE A;  5KE4 A;  4HFD A;  3SQ6 A;  4UXU A;  4WV9 A;  4AFT A;  5L4E A;  1UX2 A;  2XQ9 A;  4BFQ A;  4TWD A;  3U8M A;  5HCJ A;  5LXB A;  2PH9 A;  3UQ7 A;  1I9B A;  2YOE A;  4QH1 A;  3U8K A;  4A97 A;  2X00 A;  5J0Z A;  2Y54 A;  4FRR A;  5AFM B;  3IGQ A;  4EZ1 A;  3JAF A;  4ZR6 A;  3EAM A;  3EHZ A; 
#chains in the Genus database with same CATH homology
 3JAE A;  4TNV A;  3PEO A;  2XQ5 A;  3RIF A;  2WN9 A;  4IL4 A;  2BG9 E;  4QAA A;  3UU4 A;  3UQ4 A;  4UM3 A;  2W8G A;  2X00 D;  2XQ6 A;  3LSV A;  2Y58 A;  2BG9 A;  2WNL A;  3U8N A;  3WIP A;  2YMD A;  5HCM A;  4TWH A;  3RQU A;  3UU3 A;  2XNT A;  3TLT A;  3ZDG A;  5AFH A;  3TLW A;  5AIN A;  3TLU A;  3PMZ A;  4Z91 A;  4QH4 A;  3WTK A;  3ZDH A;  3U8J A;  2XYS A;  2PGZ A;  5BP0 A;  4ZZB A;  4XK9 A;  4HFH A;  5BRX A;  4NPP A;  1UW6 A;  2QC1 B;  5AFL A;  5AFK A;  4A98 A;  4DBM A;  3WTO A;  2XQA A;  2ZJU A;  5SYO A;  3WTI A;  2XQ4 A;  1UV6 A;  5L4H A;  4UM3 S;  5HEG A;  4IL9 A;  4ZJS A;  2YN6 A;  2BYN A;  4QAC A;  5TVC A;  4COF A;  5L47 A;  2BR7 A;  2WZY A;  4ZK1 A;  4F8H A;  5JME A;  3P50 A;  2Y7Y A;  3ZKR A;  3U8L A;  3UU5 A;  2XYT A;  3C84 A;  2WNJ A;  5HEO A;  5BW2 A;  4LMK A;  2WNC A;  2YKS A;  3TLV A;  3UU6 A;  2UZ6 A;  4X5T A;  4ZK4 A;  4HFC A;  2C9T A;  4ILC A;  3WTN A;  5CO5 A;  4QAB A;  4LML A;  4AFG A;  2XZ5 A;  4ILA A;  5FJV A;  2BYS A;  3EI0 A;  3P4W A;  2XZ6 A;  2Y57 A;  5J5G A;  3RQW A;  2BYQ A;  5IUX A;  5HEH A;  4Z90 A;  4ZRU A;  3UU8 A;  4UM1 A;  2VL0 A;  2YME A;  3T4M A;  2XNV A;  4HQP A;  5AFM A;  4UM3 P;  2BYR A;  5J5H A;  2XNU A;  2BR8 A;  4PIR A;  3SQ9 A;  3WTM A;  3GUA A;  5CFB A;  3WTL A;  5HEU A;  2XQ7 A;  5HEJ A;  4NZB A;  4TWF A;  3SIO A;  4QH5 A;  5AFJ A;  4ZZC A;  3TLS A;  2BG9 B;  5KZU A;  3WTH A;  4ILB A;  5AFN A;  4LMJ A;  4ZJT A;  2XQ3 A;  3RIA A;  3RHW A;  2XQ8 A;  3JAD A;  4ALX A;  4D01 A;  2ZJV A;  4HFI A;  3C79 A;  4HFE A;  4IRE A;  3WTJ A;  3SH1 A;  2Y56 A;  4HFB A;  2BG9 C;  5J5F A;  5LG3 A;  3RI5 A;  4BQT A;  5J5I A;  4B5D A;  2BYP A;  3UUB A;  4AFH A;  4UY2 A;  2W8F A;  2BJ0 A;  4TNW A;  4XHE A;  5KE4 A;  4HFD A;  3SQ6 A;  4UXU A;  4WV9 A;  4AFT A;  5L4E A;  1UX2 A;  2XQ9 A;  4BFQ A;  4TWD A;  3U8M A;  5HCJ A;  5LXB A;  2PH9 A;  3UQ7 A;  1I9B A;  2YOE A;  4QH1 A;  3U8K A;  4A97 A;  2X00 A;  5J0Z A;  2Y54 A;  4FRR A;  5AFM B;  3IGQ A;  4EZ1 A;  3JAF A;  4ZR6 A;  3EAM A;  3EHZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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