5AFNA

Alpha7-achbp in complex with lobeline and fragment 5
Total Genus 46
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
205
structure length
205
Chain Sequence
b'GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Molecular Blueprint of Allosteric Binding Sites in a Homologue of the Agonist-Binding Domain of the Alpha7 Nicotinic Acetylcholine Receptor.
pubmed doi rcsb
molecule keywords ACETYLCHOLINE-BINDING PROTEIN, NEURONAL ACETYLCHOLINE RECEPT
source organism Homo sapiens
molecule tags Transport protein
total genus 46
structure length 205
sequence length 205
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2015-01-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5afnA00
5BRXA 4LMJA 4UM3S 3UU3A 2ZJUA 2QC1B 4IREA 2Y56A 4ZK4A 4ZJSA 4AFTA 5KE4A 4QAAA 5AFHA 3RI5A 4BQTA 3U8JA 2BR7A 5FJVA 2WNCA 4ZJTA 2XYSA 2XQ8A 4ZK1A 2BR8A 3UU6A 3EAMA 2BG9C 3C84A 3WTKA 4F8HA 2ZJVA 2YN6A 2BYRA 2BG9A 2Y57A 5L4HA 2X00A 4HFDA 4COFA 4ZR6A 4LMLA 2Y54A 2XQ6A 2WNLA 4QH4A 3RQWA 4QH5A 5HCJA 3ZDHA 3TLTA 5LXBA 2C9TA 4AFHA 3PMZA 5J0ZA 2WZYA 3TLVA 2XQ3A 2BYPA 2W8FA 4LMKA 4QABA 4Z91A 2Y58A 3SQ9A 4DBMA 2WN9A 5AFLA 4A97A 2WNJA 5J5GA 4NPPA 3RQUA 3WTJA 5LG3A 1I9BA 4HFIA 4ZZCA 3P4WA 4UM3A 3IGQA 3SH1A 4HFCA 3SQ6A 2XZ6A 2YOEA 4ILAA 4TWDA 5J5IA 3UQ4A 3UUBA 4QH1A 4TWHA 3JADA 4TNVA 4TWFA 5AFNA 5J5HA 4D01A 3JAEA 5CFBA 3U8MA 3EI0A 2PGZA 3WTNA 2UZ6A 4AFGA 4HFHA 3ZKRA 3JAFA 2XNUA 5HEJA 2XQ9A 5JMEA 2XQ7A 5HEHA 4HQPA 2YMDA 4HFBA 3SIOA 2XZ5A 3U8NA 3ZDGA 4IL9A 1UV6A 3T4MA 5AFMB 4UY2A 3U8LA 4ZRUA 3TLUA 2XQ4A 4UXUA 2BG9E 3WTIA 3TLWA 4UM1A 3WTMA 5AINA 4QACA 5BW2A 4X5TA 5J5FA 4XHEA 2XQAA 4TNWA 3U8KA 1UX2A 3UQ7A 2BYSA 2YKSA 2XQ5A 3TLSA 2BG9B 5L47A 4ZZBA 2XNVA 4UM3P 3WTLA 2XNTA 3C79A 2YMEA 4EZ1A 2PH9A 2Y7YA 5AFJA 4A98A 5AFKA 2BYQA 5HCMA 4XK9A 4ILCA 2X00D 4BFQA 2W8GA 5CO5A 5HEOA 2BJ0A 5TVCA 3GUAA 4WV9A 3PEOA 5L4EA 3UU8A 4NZBA 3WTHA 4Z90A 3P50A 3RHWA 5KZUA 3UU4A 4ILBA 3LSVA 5IUXA 3RIFA 4HFEA 2BYNA 5SYOA 3RIAA 4PIRA 5HEUA 4IL4A 4FRRA 3WTOA 3EHZA 2XYTA 3UU5A 4ALXA 3WIPA 5BP0A 5AFMA 2VL0A 1UW6A 5HEGA 4B5DA
chains in the Genus database with same CATH superfamily
5BRXA 4LMJA 4UM3S 3UU3A 2ZJUA 2QC1B 4IREA 2Y56A 4ZK4A 4ZJSA 4AFTA 5KE4A 4QAAA 5AFHA 3RI5A 4BQTA 3U8JA 2BR7A 5FJVA 2WNCA 4ZJTA 2XYSA 2XQ8A 4ZK1A 2BR8A 3UU6A 3EAMA 2BG9C 3C84A 3WTKA 4F8HA 2ZJVA 2YN6A 2BYRA 2BG9A 2Y57A 5L4HA 2X00A 4HFDA 4COFA 4ZR6A 4LMLA 2Y54A 2XQ6A 2WNLA 4QH4A 3RQWA 4QH5A 5HCJA 3ZDHA 3TLTA 5LXBA 2C9TA 4AFHA 3PMZA 5J0ZA 2WZYA 3TLVA 2XQ3A 2BYPA 2W8FA 4LMKA 4QABA 4Z91A 2Y58A 3SQ9A 4DBMA 2WN9A 5AFLA 4A97A 2WNJA 5J5GA 4NPPA 3RQUA 3WTJA 5LG3A 1I9BA 4HFIA 4ZZCA 3P4WA 4UM3A 3IGQA 3SH1A 4HFCA 3SQ6A 2XZ6A 2YOEA 4ILAA 4TWDA 5J5IA 3UQ4A 3UUBA 4QH1A 4TWHA 3JADA 4TNVA 4TWFA 5AFNA 5J5HA 4D01A 3JAEA 5CFBA 3U8MA 3EI0A 2PGZA 3WTNA 2UZ6A 4AFGA 4HFHA 3ZKRA 3JAFA 2XNUA 5HEJA 2XQ9A 5JMEA 2XQ7A 5HEHA 4HQPA 2YMDA 4HFBA 3SIOA 2XZ5A 3U8NA 3ZDGA 4IL9A 1UV6A 3T4MA 5AFMB 4UY2A 3U8LA 4ZRUA 3TLUA 2XQ4A 4UXUA 2BG9E 3WTIA 3TLWA 4UM1A 3WTMA 5AINA 4QACA 5BW2A 4X5TA 5J5FA 4XHEA 2XQAA 4TNWA 3U8KA 1UX2A 3UQ7A 2BYSA 2YKSA 2XQ5A 3TLSA 2BG9B 5L47A 4ZZBA 2XNVA 4UM3P 3WTLA 2XNTA 3C79A 2YMEA 4EZ1A 2PH9A 2Y7YA 5AFJA 4A98A 5AFKA 2BYQA 5HCMA 4XK9A 4ILCA 2X00D 4BFQA 2W8GA 5CO5A 5HEOA 2BJ0A 5TVCA 3GUAA 4WV9A 3PEOA 5L4EA 3UU8A 4NZBA 3WTHA 4Z90A 3P50A 3RHWA 5KZUA 3UU4A 4ILBA 3LSVA 5IUXA 3RIFA 4HFEA 2BYNA 5SYOA 3RIAA 4PIRA 5HEUA 4IL4A 4FRRA 3WTOA 3EHZA 2XYTA 3UU5A 4ALXA 3WIPA 5BP0A 5AFMA 2VL0A 1UW6A 5HEGA 4B5DA
chains in the Genus database with same CATH topology
5BRXA 4LMJA 4UM3S 3UU3A 2ZJUA 2QC1B 4IREA 2Y56A 4ZK4A 4ZJSA 4AFTA 5KE4A 4QAAA 5AFHA 3RI5A 4BQTA 3U8JA 2BR7A 5FJVA 2WNCA 4ZJTA 2XYSA 2XQ8A 4ZK1A 2BR8A 3UU6A 3EAMA 2BG9C 3C84A 3WTKA 4F8HA 2ZJVA 2YN6A 2BYRA 2BG9A 2Y57A 5L4HA 2X00A 4HFDA 4COFA 4ZR6A 4LMLA 2Y54A 2XQ6A 2WNLA 4QH4A 3RQWA 4QH5A 5HCJA 3ZDHA 3TLTA 5LXBA 2C9TA 4AFHA 3PMZA 5J0ZA 2WZYA 3TLVA 2XQ3A 2BYPA 2W8FA 4LMKA 4QABA 4Z91A 2Y58A 3SQ9A 4DBMA 2WN9A 5AFLA 4A97A 2WNJA 5J5GA 4NPPA 3RQUA 3WTJA 5LG3A 1I9BA 4HFIA 4ZZCA 3P4WA 4UM3A 3IGQA 3SH1A 4HFCA 3SQ6A 2XZ6A 2YOEA 4ILAA 4TWDA 5J5IA 3UQ4A 3UUBA 4QH1A 4TWHA 3JADA 4TNVA 4TWFA 5AFNA 5J5HA 4D01A 3JAEA 5CFBA 3U8MA 3EI0A 2PGZA 3WTNA 2UZ6A 4AFGA 4HFHA 3ZKRA 3JAFA 2XNUA 5HEJA 2XQ9A 5JMEA 2XQ7A 5HEHA 4HQPA 2YMDA 4HFBA 3SIOA 2XZ5A 3U8NA 3ZDGA 4IL9A 1UV6A 3T4MA 5AFMB 4UY2A 3U8LA 4ZRUA 3TLUA 2XQ4A 4UXUA 2BG9E 3WTIA 3TLWA 4UM1A 3WTMA 5AINA 4QACA 5BW2A 4X5TA 5J5FA 4XHEA 2XQAA 4TNWA 3U8KA 1UX2A 3UQ7A 2BYSA 2YKSA 2XQ5A 3TLSA 2BG9B 5L47A 4ZZBA 2XNVA 4UM3P 3WTLA 2XNTA 3C79A 2YMEA 4EZ1A 2PH9A 2Y7YA 5AFJA 4A98A 5AFKA 2BYQA 5HCMA 4XK9A 4ILCA 2X00D 4BFQA 2W8GA 5CO5A 5HEOA 2BJ0A 5TVCA 3GUAA 4WV9A 3PEOA 5L4EA 3UU8A 4NZBA 3WTHA 4Z90A 3P50A 3RHWA 5KZUA 3UU4A 4ILBA 3LSVA 5IUXA 3RIFA 4HFEA 2BYNA 5SYOA 3RIAA 4PIRA 5HEUA 4IL4A 4FRRA 3WTOA 3EHZA 2XYTA 3UU5A 4ALXA 3WIPA 5BP0A 5AFMA 2VL0A 1UW6A 5HEGA 4B5DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5BRX A;  4LMJ A;  4UM3 S;  3UU3 A;  2ZJU A;  2QC1 B;  4IRE A;  2Y56 A;  4ZK4 A;  4ZJS A;  4AFT A;  5KE4 A;  4QAA A;  5AFH A;  3RI5 A;  4BQT A;  3U8J A;  2BR7 A;  5FJV A;  2WNC A;  4ZJT A;  2XYS A;  2XQ8 A;  4ZK1 A;  2BR8 A;  3UU6 A;  3EAM A;  2BG9 C;  3C84 A;  3WTK A;  4F8H A;  2ZJV A;  2YN6 A;  2BYR A;  2BG9 A;  2Y57 A;  5L4H A;  2X00 A;  4HFD A;  4COF A;  4ZR6 A;  4LML A;  2Y54 A;  2XQ6 A;  2WNL A;  4QH4 A;  3RQW A;  4QH5 A;  5HCJ A;  3ZDH A;  3TLT A;  5LXB A;  2C9T A;  4AFH A;  3PMZ A;  5J0Z A;  2WZY A;  3TLV A;  2XQ3 A;  2BYP A;  2W8F A;  4LMK A;  4QAB A;  4Z91 A;  2Y58 A;  3SQ9 A;  4DBM A;  2WN9 A;  5AFL A;  4A97 A;  2WNJ A;  5J5G A;  4NPP A;  3RQU A;  3WTJ A;  5LG3 A;  1I9B A;  4HFI A;  4ZZC A;  3P4W A;  4UM3 A;  3IGQ A;  3SH1 A;  4HFC A;  3SQ6 A;  2XZ6 A;  2YOE A;  4ILA A;  4TWD A;  5J5I A;  3UQ4 A;  3UUB A;  4QH1 A;  4TWH A;  3JAD A;  4TNV A;  4TWF A;  5AFN A;  5J5H A;  4D01 A;  3JAE A;  5CFB A;  3U8M A;  3EI0 A;  2PGZ A;  3WTN A;  2UZ6 A;  4AFG A;  4HFH A;  3ZKR A;  3JAF A;  2XNU A;  5HEJ A;  2XQ9 A;  5JME A;  2XQ7 A;  5HEH A;  4HQP A;  2YMD A;  4HFB A;  3SIO A;  2XZ5 A;  3U8N A;  3ZDG A;  4IL9 A;  1UV6 A;  3T4M A;  5AFM B;  4UY2 A;  3U8L A;  4ZRU A;  3TLU A;  2XQ4 A;  4UXU A;  2BG9 E;  3WTI A;  3TLW A;  4UM1 A;  3WTM A;  5AIN A;  4QAC A;  5BW2 A;  4X5T A;  5J5F A;  4XHE A;  2XQA A;  4TNW A;  3U8K A;  1UX2 A;  3UQ7 A;  2BYS A;  2YKS A;  2XQ5 A;  3TLS A;  2BG9 B;  5L47 A;  4ZZB A;  2XNV A;  4UM3 P;  3WTL A;  2XNT A;  3C79 A;  2YME A;  4EZ1 A;  2PH9 A;  2Y7Y A;  5AFJ A;  4A98 A;  5AFK A;  2BYQ A;  5HCM A;  4XK9 A;  4ILC A;  2X00 D;  4BFQ A;  2W8G A;  5CO5 A;  5HEO A;  2BJ0 A;  5TVC A;  3GUA A;  4WV9 A;  3PEO A;  5L4E A;  3UU8 A;  4NZB A;  3WTH A;  4Z90 A;  3P50 A;  3RHW A;  5KZU A;  3UU4 A;  4ILB A;  3LSV A;  5IUX A;  3RIF A;  4HFE A;  2BYN A;  5SYO A;  3RIA A;  4PIR A;  5HEU A;  4IL4 A;  4FRR A;  3WTO A;  3EHZ A;  2XYT A;  3UU5 A;  4ALX A;  3WIP A;  5BP0 A;  5AFM A;  2VL0 A;  1UW6 A;  5HEG A;  4B5D A; 
#chains in the Genus database with same CATH topology
 5BRX A;  4LMJ A;  4UM3 S;  3UU3 A;  2ZJU A;  2QC1 B;  4IRE A;  2Y56 A;  4ZK4 A;  4ZJS A;  4AFT A;  5KE4 A;  4QAA A;  5AFH A;  3RI5 A;  4BQT A;  3U8J A;  2BR7 A;  5FJV A;  2WNC A;  4ZJT A;  2XYS A;  2XQ8 A;  4ZK1 A;  2BR8 A;  3UU6 A;  3EAM A;  2BG9 C;  3C84 A;  3WTK A;  4F8H A;  2ZJV A;  2YN6 A;  2BYR A;  2BG9 A;  2Y57 A;  5L4H A;  2X00 A;  4HFD A;  4COF A;  4ZR6 A;  4LML A;  2Y54 A;  2XQ6 A;  2WNL A;  4QH4 A;  3RQW A;  4QH5 A;  5HCJ A;  3ZDH A;  3TLT A;  5LXB A;  2C9T A;  4AFH A;  3PMZ A;  5J0Z A;  2WZY A;  3TLV A;  2XQ3 A;  2BYP A;  2W8F A;  4LMK A;  4QAB A;  4Z91 A;  2Y58 A;  3SQ9 A;  4DBM A;  2WN9 A;  5AFL A;  4A97 A;  2WNJ A;  5J5G A;  4NPP A;  3RQU A;  3WTJ A;  5LG3 A;  1I9B A;  4HFI A;  4ZZC A;  3P4W A;  4UM3 A;  3IGQ A;  3SH1 A;  4HFC A;  3SQ6 A;  2XZ6 A;  2YOE A;  4ILA A;  4TWD A;  5J5I A;  3UQ4 A;  3UUB A;  4QH1 A;  4TWH A;  3JAD A;  4TNV A;  4TWF A;  5AFN A;  5J5H A;  4D01 A;  3JAE A;  5CFB A;  3U8M A;  3EI0 A;  2PGZ A;  3WTN A;  2UZ6 A;  4AFG A;  4HFH A;  3ZKR A;  3JAF A;  2XNU A;  5HEJ A;  2XQ9 A;  5JME A;  2XQ7 A;  5HEH A;  4HQP A;  2YMD A;  4HFB A;  3SIO A;  2XZ5 A;  3U8N A;  3ZDG A;  4IL9 A;  1UV6 A;  3T4M A;  5AFM B;  4UY2 A;  3U8L A;  4ZRU A;  3TLU A;  2XQ4 A;  4UXU A;  2BG9 E;  3WTI A;  3TLW A;  4UM1 A;  3WTM A;  5AIN A;  4QAC A;  5BW2 A;  4X5T A;  5J5F A;  4XHE A;  2XQA A;  4TNW A;  3U8K A;  1UX2 A;  3UQ7 A;  2BYS A;  2YKS A;  2XQ5 A;  3TLS A;  2BG9 B;  5L47 A;  4ZZB A;  2XNV A;  4UM3 P;  3WTL A;  2XNT A;  3C79 A;  2YME A;  4EZ1 A;  2PH9 A;  2Y7Y A;  5AFJ A;  4A98 A;  5AFK A;  2BYQ A;  5HCM A;  4XK9 A;  4ILC A;  2X00 D;  4BFQ A;  2W8G A;  5CO5 A;  5HEO A;  2BJ0 A;  5TVC A;  3GUA A;  4WV9 A;  3PEO A;  5L4E A;  3UU8 A;  4NZB A;  3WTH A;  4Z90 A;  3P50 A;  3RHW A;  5KZU A;  3UU4 A;  4ILB A;  3LSV A;  5IUX A;  3RIF A;  4HFE A;  2BYN A;  5SYO A;  3RIA A;  4PIR A;  5HEU A;  4IL4 A;  4FRR A;  3WTO A;  3EHZ A;  2XYT A;  3UU5 A;  4ALX A;  3WIP A;  5BP0 A;  5AFM A;  2VL0 A;  1UW6 A;  5HEG A;  4B5D A; 
#chains in the Genus database with same CATH homology
 5BRX A;  4LMJ A;  4UM3 S;  3UU3 A;  2ZJU A;  2QC1 B;  4IRE A;  2Y56 A;  4ZK4 A;  4ZJS A;  4AFT A;  5KE4 A;  4QAA A;  5AFH A;  3RI5 A;  4BQT A;  3U8J A;  2BR7 A;  5FJV A;  2WNC A;  4ZJT A;  2XYS A;  2XQ8 A;  4ZK1 A;  2BR8 A;  3UU6 A;  3EAM A;  2BG9 C;  3C84 A;  3WTK A;  4F8H A;  2ZJV A;  2YN6 A;  2BYR A;  2BG9 A;  2Y57 A;  5L4H A;  2X00 A;  4HFD A;  4COF A;  4ZR6 A;  4LML A;  2Y54 A;  2XQ6 A;  2WNL A;  4QH4 A;  3RQW A;  4QH5 A;  5HCJ A;  3ZDH A;  3TLT A;  5LXB A;  2C9T A;  4AFH A;  3PMZ A;  5J0Z A;  2WZY A;  3TLV A;  2XQ3 A;  2BYP A;  2W8F A;  4LMK A;  4QAB A;  4Z91 A;  2Y58 A;  3SQ9 A;  4DBM A;  2WN9 A;  5AFL A;  4A97 A;  2WNJ A;  5J5G A;  4NPP A;  3RQU A;  3WTJ A;  5LG3 A;  1I9B A;  4HFI A;  4ZZC A;  3P4W A;  4UM3 A;  3IGQ A;  3SH1 A;  4HFC A;  3SQ6 A;  2XZ6 A;  2YOE A;  4ILA A;  4TWD A;  5J5I A;  3UQ4 A;  3UUB A;  4QH1 A;  4TWH A;  3JAD A;  4TNV A;  4TWF A;  5AFN A;  5J5H A;  4D01 A;  3JAE A;  5CFB A;  3U8M A;  3EI0 A;  2PGZ A;  3WTN A;  2UZ6 A;  4AFG A;  4HFH A;  3ZKR A;  3JAF A;  2XNU A;  5HEJ A;  2XQ9 A;  5JME A;  2XQ7 A;  5HEH A;  4HQP A;  2YMD A;  4HFB A;  3SIO A;  2XZ5 A;  3U8N A;  3ZDG A;  4IL9 A;  1UV6 A;  3T4M A;  5AFM B;  4UY2 A;  3U8L A;  4ZRU A;  3TLU A;  2XQ4 A;  4UXU A;  2BG9 E;  3WTI A;  3TLW A;  4UM1 A;  3WTM A;  5AIN A;  4QAC A;  5BW2 A;  4X5T A;  5J5F A;  4XHE A;  2XQA A;  4TNW A;  3U8K A;  1UX2 A;  3UQ7 A;  2BYS A;  2YKS A;  2XQ5 A;  3TLS A;  2BG9 B;  5L47 A;  4ZZB A;  2XNV A;  4UM3 P;  3WTL A;  2XNT A;  3C79 A;  2YME A;  4EZ1 A;  2PH9 A;  2Y7Y A;  5AFJ A;  4A98 A;  5AFK A;  2BYQ A;  5HCM A;  4XK9 A;  4ILC A;  2X00 D;  4BFQ A;  2W8G A;  5CO5 A;  5HEO A;  2BJ0 A;  5TVC A;  3GUA A;  4WV9 A;  3PEO A;  5L4E A;  3UU8 A;  4NZB A;  3WTH A;  4Z90 A;  3P50 A;  3RHW A;  5KZU A;  3UU4 A;  4ILB A;  3LSV A;  5IUX A;  3RIF A;  4HFE A;  2BYN A;  5SYO A;  3RIA A;  4PIR A;  5HEU A;  4IL4 A;  4FRR A;  3WTO A;  3EHZ A;  2XYT A;  3UU5 A;  4ALX A;  3WIP A;  5BP0 A;  5AFM A;  2VL0 A;  1UW6 A;  5HEG A;  4B5D A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...