5AGSA

Crystal structure of the leurs editing domain of mycobacterium tuberculosis in complex with the adduct 3-(aminomethyl)-4-bromo-7-ethoxybenzo[c][1,2]oxaborol-1(3h)-ol-amp
Total Genus 54
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
201
structure length
192
Chain Sequence
GAVALFSARAVDIEVFTTRPDTLFGATYLVLAPEHDLVDELVAASWPAGVNPLWTYGGGTPGEAIAAYRRAIAAKSDLERQEEKTGVFLGSYAINPANGEPVPIFIADYVLAGYGTGAIMAVPGHDQRDWDFARAFGLPIVEVIAGGNISESAYTGDGILVNSDYLNGMSVPAAKRAIVDRLESAGRGRARI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
molecule keywords LEUCYL-TRNA SYNTHETASE
publication title Discovery of Novel Oral Protein Synthesis Inhibitors of Mycobacterium Tuberculosis that Target Leucyl-tRNA Synthetase.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 54
structure length 192
sequence length 201
ec nomenclature ec 6.1.1.4: Leucine--tRNA ligase.
pdb deposition date 2015-02-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.740.10 Alpha Beta Alpha-Beta Complex Isoleucyl-tRNA Synthetase; domain 2 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 5agsA00
5AGHA 4ARCA 1WK8A 1WZ2A 2WFEA 2AJIA 3O0AA 2AJHA 2V0CA 5AGJA 4AS1A 3ZJTA 1UE0A 4AQ7A 3ZJVA 4K48A 1WNZA 2BYTA 2WFDA 1WKBA 1OBHA 1GAXA 2AJGA 5AGRA 2V0GA 1WNYA 1OBCA 1UDZA 1WKAA 3ZJUA 4K47A 3PZ0A 1QU2A 4CQNA 2WFGA 3PZ6A 1WK9A 1QU3A 5AGSA 5AGTA 5AGIA 1H3NA 4ARIA 1JZSA 1JZQA 1FFYA 3ZGZA 3PZ5A 1ILEA 2BTEA 1IVSA
chains in the Genus database with same CATH superfamily
5AGHA 4ARCA 1WK8A 1WZ2A 2WFEA 2AJIA 3O0AA 2AJHA 2V0CA 5AGJA 4AS1A 3ZJTA 1UE0A 4AQ7A 3ZJVA 4K48A 1WNZA 2BYTA 2WFDA 1WKBA 1OBHA 1GAXA 2AJGA 5AGRA 2V0GA 1WNYA 1OBCA 1UDZA 1WKAA 3ZJUA 4K47A 3PZ0A 1QU2A 4CQNA 2WFGA 3PZ6A 1WK9A 1QU3A 5AGSA 5AGTA 5AGIA 1H3NA 4ARIA 1JZSA 1JZQA 1FFYA 3ZGZA 3PZ5A 1ILEA 2BTEA 1IVSA
chains in the Genus database with same CATH topology
5AGHA 4ARCA 1WK8A 1WZ2A 2WFEA 2AJIA 3O0AA 2AJHA 2V0CA 5AGJA 4AS1A 3ZJTA 1UE0A 4AQ7A 3ZJVA 4K48A 1WNZA 2BYTA 2WFDA 1WKBA 1OBHA 1GAXA 2AJGA 5AGRA 2V0GA 1WNYA 1OBCA 1UDZA 1WKAA 3ZJUA 4K47A 3PZ0A 1QU2A 4CQNA 2WFGA 3PZ6A 1WK9A 1QU3A 5AGSA 5AGTA 5AGIA 1H3NA 4ARIA 1JZSA 1JZQA 1FFYA 3ZGZA 3PZ5A 1ILEA 2BTEA 1IVSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AGH A;  4ARC A;  1WK8 A;  1WZ2 A;  2WFE A;  2AJI A;  3O0A A;  2AJH A;  2V0C A;  5AGJ A;  4AS1 A;  3ZJT A;  1UE0 A;  4AQ7 A;  3ZJV A;  4K48 A;  1WNZ A;  2BYT A;  2WFD A;  1WKB A;  1OBH A;  1GAX A;  2AJG A;  5AGR A;  2V0G A;  1WNY A;  1OBC A;  1UDZ A;  1WKA A;  3ZJU A;  4K47 A;  3PZ0 A;  1QU2 A;  4CQN A;  2WFG A;  3PZ6 A;  1WK9 A;  1QU3 A;  5AGS A;  5AGT A;  5AGI A;  1H3N A;  4ARI A;  1JZS A;  1JZQ A;  1FFY A;  3ZGZ A;  3PZ5 A;  1ILE A;  2BTE A;  1IVS A; 
#chains in the Genus database with same CATH topology
 5AGH A;  4ARC A;  1WK8 A;  1WZ2 A;  2WFE A;  2AJI A;  3O0A A;  2AJH A;  2V0C A;  5AGJ A;  4AS1 A;  3ZJT A;  1UE0 A;  4AQ7 A;  3ZJV A;  4K48 A;  1WNZ A;  2BYT A;  2WFD A;  1WKB A;  1OBH A;  1GAX A;  2AJG A;  5AGR A;  2V0G A;  1WNY A;  1OBC A;  1UDZ A;  1WKA A;  3ZJU A;  4K47 A;  3PZ0 A;  1QU2 A;  4CQN A;  2WFG A;  3PZ6 A;  1WK9 A;  1QU3 A;  5AGS A;  5AGT A;  5AGI A;  1H3N A;  4ARI A;  1JZS A;  1JZQ A;  1FFY A;  3ZGZ A;  3PZ5 A;  1ILE A;  2BTE A;  1IVS A; 
#chains in the Genus database with same CATH homology
 5AGH A;  4ARC A;  1WK8 A;  1WZ2 A;  2WFE A;  2AJI A;  3O0A A;  2AJH A;  2V0C A;  5AGJ A;  4AS1 A;  3ZJT A;  1UE0 A;  4AQ7 A;  3ZJV A;  4K48 A;  1WNZ A;  2BYT A;  2WFD A;  1WKB A;  1OBH A;  1GAX A;  2AJG A;  5AGR A;  2V0G A;  1WNY A;  1OBC A;  1UDZ A;  1WKA A;  3ZJU A;  4K47 A;  3PZ0 A;  1QU2 A;  4CQN A;  2WFG A;  3PZ6 A;  1WK9 A;  1QU3 A;  5AGS A;  5AGT A;  5AGI A;  1H3N A;  4ARI A;  1JZS A;  1JZQ A;  1FFY A;  3ZGZ A;  3PZ5 A;  1ILE A;  2BTE A;  1IVS A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...