5AH2A

The sliding clamp of mycobacterium smegmatis in complex with a natural product.
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
388
structure length
380
Chain Sequence
TDLKFRVVREDFADAVAWVARSLPTRPTIPVLAGVLLTGTDEGLTISGFDYEVSAEVKVSAEIASAGSVLVSGRLLSDITKALPAKPVEVSVEGTRVSLTCGSARFSLPTLAVEDYPALPALPEETGVIASDLFAEAIGQVAVAAGRLPMLTGIRVEISGESVVLAATDRFRLAVRELTWVTTAGDVEAAVLVPAKTLAEAAKAGTDGNQVHLALGSGASVGKDGLLGIRSEGKRSTTRLLDAEFPKFRQLLPAEHTAVATIGVAELTEAIKRVALVADRGAQIRMEFSDDTLKLSAGADDVGRAEEDLPVDFAGEPLTIAFNPTYLTDGLGSLHSERVTFGFTTPSRPAVLRPAGEGGSGPFPAAKTDYVYLLMPVRLP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/antibiotic
molecule keywords DNA POLYMERASE III SUBUNIT BETA
publication title Antibiotics. Targeting Dnan for Tuberculosis Therapy Using Novel Griselimycins.
pubmed doi rcsb
source organism Mycobacterium smegmatis
total genus 85
structure length 380
sequence length 388
chains with identical sequence B, C, D
ec nomenclature ec 2.7.7.7: DNA-directed DNA polymerase.
pdb deposition date 2015-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00712 DNA_pol3_beta DNA polymerase III beta subunit, N-terminal domain
A PF02767 DNA_pol3_beta_2 DNA polymerase III beta subunit, central domain
A PF02768 DNA_pol3_beta_3 DNA polymerase III beta subunit, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 5ah2A01
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 5ah2A02
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 5ah2A03
4K3RA 2XURA 4PNUA 4TR6A 3Q4JA 4N95A 3BEPA 4TR8A 5AGUA 3D1FA 4N97A 4K3PA 4N9AA 1VPKA 3D1EA 4N96A 4PNVA 4OVGA 5AH4A 3L0WA 4K3QA 4MJRA 4MJQA 4MJPA 5AH2A 3D1GA 1MMIA 1JQJA 3L0XA 4N94A 5FVEA 4PNWA 3RB9A 1JQLA 3QSBB 3PGEB 3L10A 4N99A 4K3KA 4K3OA 4TSZA 1OK7A 4S3IA 3PWEA 2POLA 4TR7A 4K74A 4N98A 2AVTA 3Q4KA 4OVFA 4RKIA 4OVHA 4TRTA 5FRQA 1UNNA 3T0PA 4K3LA 2AWAA 4K3SA 3F1VA 5AGVA 3Q4LA 4K3MA 3QSBA 3P16A
chains in the Genus database with same CATH superfamily
4K3RA 2XURA 3PGEA 4PNUA 3Q4JA 4N95A 4TR7A 4TR6A 3BEPA 4TR8A 5AGUA 3D1FA 4N97A 4K3PA 4N9AA 1VPKA 3L10B 3D1EA 4N96A 4PNVA 4OVGA 5AH4A 3L0WA 4K3QA 4MJRA 4MJQA 4MJPA 5AH2A 3D1GA 1MMIA 1JQJA 3L0XA 4N94A 5FVEA 4PNWA 3RB9A 1JQLA 3QSBB 3P16A 3PGEB 3L10A 4N99A 4K3KA 4K3OA 4TSZA 1OK7A 4S3IA 3PWEA 2POLA 3QSBA 4K74A 4N98A 2AVTA 3Q4KA 4OVFA 4RKIA 4OVHA 4TRTA 5FRQA 1UNNA 3T0PA 4K3LA 2AWAA 4K3SA 3F1VA 5AGVA 3Q4LA 4K3MA 3L0WB 3L0XB
chains in the Genus database with same CATH topology
4K3RA 2XURA 4PNUA 4TR6A 3Q4JA 4N95A 3BEPA 4TR8A 5AGUA 3D1FA 4N97A 4K3PA 4N9AA 1VPKA 3D1EA 4N96A 4PNVA 4OVGA 5AH4A 3L0WA 4K3QA 4MJRA 4MJQA 4MJPA 5AH2A 3D1GA 1MMIA 1JQJA 3L0XA 4N94A 5FVEA 4PNWA 3RB9A 1JQLA 3QSBB 3PGEB 3L10A 4N99A 4K3KA 4K3OA 4TSZA 1OK7A 4S3IA 3PWEA 2POLA 4TR7A 4K74A 4N98A 2AVTA 3Q4KA 4OVFA 4RKIA 4OVHA 4TRTA 5FRQA 1UNNA 3T0PA 4K3LA 2AWAA 4K3SA 3F1VA 5AGVA 3Q4LA 4K3MA 3QSBA 3P16A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4K3R A;  2XUR A;  4PNU A;  4TR6 A;  3Q4J A;  4N95 A;  3BEP A;  4TR8 A;  5AGU A;  3D1F A;  4N97 A;  4K3P A;  4N9A A;  1VPK A;  3D1E A;  4N96 A;  4PNV A;  4OVG A;  5AH4 A;  3L0W A;  4K3Q A;  4MJR A;  4MJQ A;  4MJP A;  5AH2 A;  3D1G A;  1MMI A;  1JQJ A;  3L0X A;  4N94 A;  5FVE A;  4PNW A;  3RB9 A;  1JQL A;  3QSB B;  3PGE B;  3L10 A;  4N99 A;  4K3K A;  4K3O A;  4TSZ A;  1OK7 A;  4S3I A;  3PWE A;  2POL A;  4TR7 A;  4K74 A;  4N98 A;  2AVT A;  3Q4K A;  4OVF A;  4RKI A;  4OVH A;  4TRT A;  5FRQ A;  1UNN A;  3T0P A;  4K3L A;  2AWA A;  4K3S A;  3F1V A;  5AGV A;  3Q4L A;  4K3M A;  3QSB A;  3P16 A; 
#chains in the Genus database with same CATH topology
 4K3R A;  2XUR A;  3PGE A;  4PNU A;  3Q4J A;  4N95 A;  4TR7 A;  4TR6 A;  3BEP A;  4TR8 A;  5AGU A;  3D1F A;  4N97 A;  4K3P A;  4N9A A;  1VPK A;  3L10 B;  3D1E A;  4N96 A;  4PNV A;  4OVG A;  5AH4 A;  3L0W A;  4K3Q A;  4MJR A;  4MJQ A;  4MJP A;  5AH2 A;  3D1G A;  1MMI A;  1JQJ A;  3L0X A;  4N94 A;  5FVE A;  4PNW A;  3RB9 A;  1JQL A;  3QSB B;  3P16 A;  3PGE B;  3L10 A;  4N99 A;  4K3K A;  4K3O A;  4TSZ A;  1OK7 A;  4S3I A;  3PWE A;  2POL A;  3QSB A;  4K74 A;  4N98 A;  2AVT A;  3Q4K A;  4OVF A;  4RKI A;  4OVH A;  4TRT A;  5FRQ A;  1UNN A;  3T0P A;  4K3L A;  2AWA A;  4K3S A;  3F1V A;  5AGV A;  3Q4L A;  4K3M A;  3L0W B;  3L0X B; 
#chains in the Genus database with same CATH homology
 4K3R A;  2XUR A;  4PNU A;  4TR6 A;  3Q4J A;  4N95 A;  3BEP A;  4TR8 A;  5AGU A;  3D1F A;  4N97 A;  4K3P A;  4N9A A;  1VPK A;  3D1E A;  4N96 A;  4PNV A;  4OVG A;  5AH4 A;  3L0W A;  4K3Q A;  4MJR A;  4MJQ A;  4MJP A;  5AH2 A;  3D1G A;  1MMI A;  1JQJ A;  3L0X A;  4N94 A;  5FVE A;  4PNW A;  3RB9 A;  1JQL A;  3QSB B;  3PGE B;  3L10 A;  4N99 A;  4K3K A;  4K3O A;  4TSZ A;  1OK7 A;  4S3I A;  3PWE A;  2POL A;  4TR7 A;  4K74 A;  4N98 A;  2AVT A;  3Q4K A;  4OVF A;  4RKI A;  4OVH A;  4TRT A;  5FRQ A;  1UNN A;  3T0P A;  4K3L A;  2AWA A;  4K3S A;  3F1V A;  5AGV A;  3Q4L A;  4K3M A;  3QSB A;  3P16 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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