5AI2A

Anomalous neutron phased crystal structure of 113cd-substituted perdeuterated pyrococcus furiosus rubredoxin to 1.75a resolution at 295k
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
54
structure length
54
Chain Sequence
MAKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
publication title Macromolecular Structure Phasing by Neutron Anomalous Diffraction.
pubmed doi rcsb
molecule keywords RUBREDOXIN
total genus 11
structure length 54
sequence length 54
ec nomenclature
pdb deposition date 2015-02-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 5ai2A00
1BRFA 5RXNA 2K2DA 4AR5A 2PYAA 4RXNA 1YUZA 3KYUA 1CAAA 1SMUA 1YV1A 3SS2A 2HR5A 1E8JA 1BE7A 1QCVA 1SMWA 1B2OA 1T9OA 4K9FA 1S2ZA 1RYTA 1YK4A 2MS3A 2PVEA 1C09A 4AR4A 3QVDA 1ZRPA 1DVBA 6RXNA 1FHMA 5AI3A 2GMGA 1IU5A 2QL0A 4YWLA 5IY0A 1JYBA 7RXNA 1R0FA 2LCQA 1SMMA 2DSXA 1LKOA 4AR3A 3KYXA 2KKDA 1LKPA 1LTLA 1R0IA 3RZ6A 1R0GA 2VL6A 1IROA 1IRNA 4ME3A 1DX8A 1YK5A 1VCXA 1IU6A 2PVXA 1CADA 1BQ8A 2V3BB 1S30A 1B2JA 1BQ9A 3RYGA 1LKMA 1RWDA 3KYVA 1YUXA 1B71A 3KYWA 1T9QA 2RDVA 1RDVA 4TPUA 1RB9A 1T9PA 1BFYA 1QYBA 3KYYA 1NNQA 1S24A 2M4YA 8RXNA 1R0JA 1R0HA 3A44A 3PWFA 4POFA 1FHHA 3MPSA 3PZAA 4POGA 1B13A 1H7VA 2KN9A 3RZTA 4AR6A 5AI2A 1RDGA 4YWMA
chains in the Genus database with same CATH superfamily
1BRFA 1I6HL 3H3VM 2A6HD 5IYDL 4A3KL 2PPTA 3GTJL 2XJVA 1CAAA 2AYJA 2V0FA 3JR7A 1YV1A 2NYDA 3LWVB 1B2OA 3HAXC 2J9UB 4K9FA 1RYTA 4AHYA 2WAQP 2YU9L 2RFKB 4AHWA 4V196 4A93L 4LHNA 3HOWL 1DVBA 1FHMA 2AUSB 2XJPA 4YWLA 1R9TL 1VZGA 1JYBA 2WB1P 1R0FA 5EIOC 1Y1WL 1SMMA 4AI2A 3KYXA 4ZN1B 3CQZL 3H97A 3PO3L 1LKPA 5C4JL 1IRNA 3LWPB 4ME3A 2H12A 3P2AA 3LWRB 3S1NL 1IU6A 3B0AB 1BQ8A 4A3GL 5GADc 3LNLA 2V3BB 4JADA 3I4ML 3RYGA 4Y52L 3KYWA 2AQCA 1QQTA 2E2IL 3A44A 3RZOL 1TWFL 2XJRA 3H9BA 3HOYL 1NXEA 1Z92B 3LWOB 5AI2A 2A6ED 3M3YL 4AR5A 3B08B 3GTGL 5JVG1 2ERSA 1SMUA 3MQKB 2Y0SP 3SS2A 1E8JA 1PFWA 3H9CA 1SMWA 3HOZL 1T9OA 3IU3I 1YK4A 2V0EA 2JA5L 2MS3A 2E2JL 1C09A 4UY81 1ZRPA 2GMGA 1IU5A 2QL0A 4WFN1 3PO2L 4AYBP 4A3ML 2LCQA 5JVH1 4E6YA 5MF6A 5DM71 1R0IA 2JA6L 3PKJA 1K83L 1I3QL 5MFPA 3HOUL 2NVXL 1IW7D 5IYBL 1YK5A 2BE5D 1VCXA 2PVXA 1CADA 1TWHL 3S2HL 4BBRL 2M6PA 4BXXL 4TVMA 1PFYA 3PL5A 4B8CD 4C2M1 3GTQL 4AHZA 1BQ9A 4BBSL 4A3DL 1LKMA 1RWDA 1B71A 4ZN3B 2ZIXA 2RDVA 2EY4E 5MGNA 2NVQL 1RB9A 4TPUA 4A3CL 4BY1L 5GAHc 3P8BA 2JA7L 1R0JA 1R0HA 5GAEc 3MPSA 3J7Z1 3GTPL 2JA8L 5K2ME 4AI0A 2KN9A 4C3HL 5M3ML 2M6OA 4AI3A 3S17L 4G6BA 5IYCL 5M3FL 4X6AL 3HJWB 1WJVA 5RXNA 2APOB 4C3JL 1YUZA 3NFPI 3KYUA 5AN9H 2A68D 2R93L 1WCML 3J7Y1 4AHXA 1S2ZA 3GTKL 3VPBE 4A3BL 4GS7D 4AR4A 1PZXA 3QVDA 2CKCA 4A3LL 3S1ML 6RXNA 1OWBA 4Y7NL 3FKIL 5MLC3 1TWGL 4XGHA 2XJUA 4AI1A 4AR3A 1LTLA 4U671 1F4LA 3RZ6A 4JAFA 4JAEA 3K7AL 2XJTA 2M4VA 3H0GL 1PFUA 4BY7L 2CKAA 4A3JL 1S30A 1B2JA 5M5YL 2NVTL 4LHLA 3GTLL 3K35A 3RZDL 2R92L 1BFYA 1QYBA 2B63L 3WWLA 4A3EL 1NNQA 1S24A 3PWFA 4POFA 4POGA 2E2HL 2L0ZA 5MFZA 5DM61 1H7VA 1TWCL 5GAGc 3HKZP 2R7ZL 4AR6A 1RDGA 1SFOL 3HJYB 4YWMA 2CR8A 3GTML 2K2DA 3ZG6A 2PYAA 4RXNA 3S2DL 3S1QL 1RYQA 2B5ID 5IP7L 3FDJA 2A69D 4JAGA 2PMZP 5H1Sc 3S14L 2XJQA 2HR5A 3PIO1 1BE7A 1QCVA 2JI1A 2XJSA 4A3FL 5IP9L 5M5XL 2PVEA 2Z3RB 3LPEB 3S1RL 2VUML 3LWQB 4QIWP 1VZIA 3WWNB 5AI3A 2ERJA 4XXBB 1P7PA 1Y1VL 2C6AA 1PFVA 5IY0A 7RXNA 2NVYL 3S15L 1NXGA 2DSXA 1LKOA 5FJ8L 3PKIA 2KKDA 3HOXL 3HOVL 2O5JD 5C4XL 1R0GA 1I50L 2VL6A 1IROA 3M4OL 1DX8A 5M5WL 5C3EL 1VZHA 5EINC 2JI3A 3I4NL 3S16L 3GTOL 1ODHA 4A3IL 2PSMC 1YUXA 3KYVA 1T9QA 1OWCA 1RDVA 3MSUA 1T9PA 3KYYA 8RXNA 2M4YA 2C6BA 1FHHA 2Z3QB 3PZAA 1B13A 1TWAL 2HVYC 2JI2A 4C3IL 5FLML 3PIP1 3QQCE 5C44L 3RZTA 3H99A
chains in the Genus database with same CATH topology
1BRFA 5RXNA 2K2DA 3ZG6A 4AR5A 2PYAA 4RXNA 1YUZA 3NFPI 3B08B 2A6HD 3KYUA 2PPTA 1RYQA 2B5ID 2XJVA 5JVG1 5AN9H 2A69D 1CAAA 2AYJA 2V0FA 4JAGA 2ERSA 1SMUA 2A68D 5H1Sc 1YV1A 2XJQA 3SS2A 2HR5A 2NYDA 1E8JA 3PIO1 1BE7A 3J7Y1 1QCVA 2JI1A 4AHXA 1SMWA 2XJSA 1B2OA 2J9UB 1T9OA 3IU3I 4K9FA 1S2ZA 1RYTA 4AHYA 1YK4A 2V0EA 2MS3A 2PVEA 2Z3RB 1C09A 3VPBE 3LPEB 4GS7D 4AHWA 4AR4A 4V196 4UY81 4LHNA 3QVDA 2CKCA 1VZIA 1ZRPA 1DVBA 3WWNB 6RXNA 1FHMA 5AI3A 2GMGA 1IU5A 2ERJA 4XXBB 2QL0A 2C6AA 1OWBA 4WFN1 4YWLA 2XJPA 5IY0A 1VZGA 1JYBA 7RXNA 1R0FA 5EIOC 2LCQA 5MLC3 4XGHA 2XJUA 1SMMA 1NXGA 4AI2A 2DSXA 5JVH1 1LKOA 4AI1A 3KYXA 4AR3A 4E6YA 4ZN1B 3PKIA 5MF6A 5DM71 2KKDA 1LKPA 1LTLA 1R0IA 4U671 2O5JD 3RZ6A 4JAFA 2VL6A 3PKJA 4JAEA 1R0GA 1IROA 1IRNA 4ME3A 1DX8A 2H12A 5MFPA 3P2AA 4YWMA 1IW7D 2XJTA 1YK5A 1VZHA 1VCXA 2BE5D 1IU6A 2PVXA 1CADA 3B0AB 2M4VA 2M6PA 1BQ8A 5EINC 5GADc 3LNLA 4TVMA 2JI3A 4B8CD 2CKAA 2V3BB 4AHZA 1S30A 4JADA 1B2JA 1ODHA 2PSMC 1BQ9A 3RYGA 1LKMA 1RWDA 1YUXA 3KYVA 1B71A 4LHLA 4ZN3B 2ZIXA 1T9QA 3KYWA 2RDVA 1OWCA 3K35A 5MGNA 1RDVA 1RB9A 3MSUA 4TPUA 1T9PA 1BFYA 1QYBA 3WWLA 5GAHc 3P8BA 3KYYA 1NNQA 1S24A 2M4YA 8RXNA 1R0JA 1R0HA 2C6BA 3A44A 3PWFA 4POFA 1FHHA 5GAEc 2Z3QB 3MPSA 3PZAA 4POGA 3J7Z1 2L0ZA 1B13A 2XJRA 5MFZA 5DM61 1H7VA 5K2ME 4AI0A 2KN9A 2JI2A 2M6OA 4AI3A 3PIP1 5GAGc 1NXEA 4G6BA 3QQCE 3RZTA 1Z92B 4AR6A 5AI2A 1RDGA 1WJVA 2A6ED 2CR8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BRF A;  5RXN A;  2K2D A;  4AR5 A;  2PYA A;  4RXN A;  1YUZ A;  3KYU A;  1CAA A;  1SMU A;  1YV1 A;  3SS2 A;  2HR5 A;  1E8J A;  1BE7 A;  1QCV A;  1SMW A;  1B2O A;  1T9O A;  4K9F A;  1S2Z A;  1RYT A;  1YK4 A;  2MS3 A;  2PVE A;  1C09 A;  4AR4 A;  3QVD A;  1ZRP A;  1DVB A;  6RXN A;  1FHM A;  5AI3 A;  2GMG A;  1IU5 A;  2QL0 A;  4YWL A;  5IY0 A;  1JYB A;  7RXN A;  1R0F A;  2LCQ A;  1SMM A;  2DSX A;  1LKO A;  4AR3 A;  3KYX A;  2KKD A;  1LKP A;  1LTL A;  1R0I A;  3RZ6 A;  1R0G A;  2VL6 A;  1IRO A;  1IRN A;  4ME3 A;  1DX8 A;  1YK5 A;  1VCX A;  1IU6 A;  2PVX A;  1CAD A;  1BQ8 A;  2V3B B;  1S30 A;  1B2J A;  1BQ9 A;  3RYG A;  1LKM A;  1RWD A;  3KYV A;  1YUX A;  1B71 A;  3KYW A;  1T9Q A;  2RDV A;  1RDV A;  4TPU A;  1RB9 A;  1T9P A;  1BFY A;  1QYB A;  3KYY A;  1NNQ A;  1S24 A;  2M4Y A;  8RXN A;  1R0J A;  1R0H A;  3A44 A;  3PWF A;  4POF A;  1FHH A;  3MPS A;  3PZA A;  4POG A;  1B13 A;  1H7V A;  2KN9 A;  3RZT A;  4AR6 A;  5AI2 A;  1RDG A;  4YWM A; 
#chains in the Genus database with same CATH topology
 1BRF A;  1I6H L;  3H3V M;  2A6H D;  5IYD L;  4A3K L;  2PPT A;  3GTJ L;  2XJV A;  1CAA A;  2AYJ A;  2V0F A;  3JR7 A;  1YV1 A;  2NYD A;  3LWV B;  1B2O A;  3HAX C;  2J9U B;  4K9F A;  1RYT A;  4AHY A;  2WAQ P;  2YU9 L;  2RFK B;  4AHW A;  4V19 6;  4A93 L;  4LHN A;  3HOW L;  1DVB A;  1FHM A;  2AUS B;  2XJP A;  4YWL A;  1R9T L;  1VZG A;  1JYB A;  2WB1 P;  1R0F A;  5EIO C;  1Y1W L;  1SMM A;  4AI2 A;  3KYX A;  4ZN1 B;  3CQZ L;  3H97 A;  3PO3 L;  1LKP A;  5C4J L;  1IRN A;  3LWP B;  4ME3 A;  2H12 A;  3P2A A;  3LWR B;  3S1N L;  1IU6 A;  3B0A B;  1BQ8 A;  4A3G L;  5GAD c;  3LNL A;  2V3B B;  4JAD A;  3I4M L;  3RYG A;  4Y52 L;  3KYW A;  2AQC A;  1QQT A;  2E2I L;  3A44 A;  3RZO L;  1TWF L;  2XJR A;  3H9B A;  3HOY L;  1NXE A;  1Z92 B;  3LWO B;  5AI2 A;  2A6E D;  3M3Y L;  4AR5 A;  3B08 B;  3GTG L;  5JVG 1;  2ERS A;  1SMU A;  3MQK B;  2Y0S P;  3SS2 A;  1E8J A;  1PFW A;  3H9C A;  1SMW A;  3HOZ L;  1T9O A;  3IU3 I;  1YK4 A;  2V0E A;  2JA5 L;  2MS3 A;  2E2J L;  1C09 A;  4UY8 1;  1ZRP A;  2GMG A;  1IU5 A;  2QL0 A;  4WFN 1;  3PO2 L;  4AYB P;  4A3M L;  2LCQ A;  5JVH 1;  4E6Y A;  5MF6 A;  5DM7 1;  1R0I A;  2JA6 L;  3PKJ A;  1K83 L;  1I3Q L;  5MFP A;  3HOU L;  2NVX L;  1IW7 D;  5IYB L;  1YK5 A;  2BE5 D;  1VCX A;  2PVX A;  1CAD A;  1TWH L;  3S2H L;  4BBR L;  2M6P A;  4BXX L;  4TVM A;  1PFY A;  3PL5 A;  4B8C D;  4C2M 1;  3GTQ L;  4AHZ A;  1BQ9 A;  4BBS L;  4A3D L;  1LKM A;  1RWD A;  1B71 A;  4ZN3 B;  2ZIX A;  2RDV A;  2EY4 E;  5MGN A;  2NVQ L;  1RB9 A;  4TPU A;  4A3C L;  4BY1 L;  5GAH c;  3P8B A;  2JA7 L;  1R0J A;  1R0H A;  5GAE c;  3MPS A;  3J7Z 1;  3GTP L;  2JA8 L;  5K2M E;  4AI0 A;  2KN9 A;  4C3H L;  5M3M L;  2M6O A;  4AI3 A;  3S17 L;  4G6B A;  5IYC L;  5M3F L;  4X6A L;  3HJW B;  1WJV A;  5RXN A;  2APO B;  4C3J L;  1YUZ A;  3NFP I;  3KYU A;  5AN9 H;  2A68 D;  2R93 L;  1WCM L;  3J7Y 1;  4AHX A;  1S2Z A;  3GTK L;  3VPB E;  4A3B L;  4GS7 D;  4AR4 A;  1PZX A;  3QVD A;  2CKC A;  4A3L L;  3S1M L;  6RXN A;  1OWB A;  4Y7N L;  3FKI L;  5MLC 3;  1TWG L;  4XGH A;  2XJU A;  4AI1 A;  4AR3 A;  1LTL A;  4U67 1;  1F4L A;  3RZ6 A;  4JAF A;  4JAE A;  3K7A L;  2XJT A;  2M4V A;  3H0G L;  1PFU A;  4BY7 L;  2CKA A;  4A3J L;  1S30 A;  1B2J A;  5M5Y L;  2NVT L;  4LHL A;  3GTL L;  3K35 A;  3RZD L;  2R92 L;  1BFY A;  1QYB A;  2B63 L;  3WWL A;  4A3E L;  1NNQ A;  1S24 A;  3PWF A;  4POF A;  4POG A;  2E2H L;  2L0Z A;  5MFZ A;  5DM6 1;  1H7V A;  1TWC L;  5GAG c;  3HKZ P;  2R7Z L;  4AR6 A;  1RDG A;  1SFO L;  3HJY B;  4YWM A;  2CR8 A;  3GTM L;  2K2D A;  3ZG6 A;  2PYA A;  4RXN A;  3S2D L;  3S1Q L;  1RYQ A;  2B5I D;  5IP7 L;  3FDJ A;  2A69 D;  4JAG A;  2PMZ P;  5H1S c;  3S14 L;  2XJQ A;  2HR5 A;  3PIO 1;  1BE7 A;  1QCV A;  2JI1 A;  2XJS A;  4A3F L;  5IP9 L;  5M5X L;  2PVE A;  2Z3R B;  3LPE B;  3S1R L;  2VUM L;  3LWQ B;  4QIW P;  1VZI A;  3WWN B;  5AI3 A;  2ERJ A;  4XXB B;  1P7P A;  1Y1V L;  2C6A A;  1PFV A;  5IY0 A;  7RXN A;  2NVY L;  3S15 L;  1NXG A;  2DSX A;  1LKO A;  5FJ8 L;  3PKI A;  2KKD A;  3HOX L;  3HOV L;  2O5J D;  5C4X L;  1R0G A;  1I50 L;  2VL6 A;  1IRO A;  3M4O L;  1DX8 A;  5M5W L;  5C3E L;  1VZH A;  5EIN C;  2JI3 A;  3I4N L;  3S16 L;  3GTO L;  1ODH A;  4A3I L;  2PSM C;  1YUX A;  3KYV A;  1T9Q A;  1OWC A;  1RDV A;  3MSU A;  1T9P A;  3KYY A;  8RXN A;  2M4Y A;  2C6B A;  1FHH A;  2Z3Q B;  3PZA A;  1B13 A;  1TWA L;  2HVY C;  2JI2 A;  4C3I L;  5FLM L;  3PIP 1;  3QQC E;  5C44 L;  3RZT A;  3H99 A; 
#chains in the Genus database with same CATH homology
 1BRF A;  5RXN A;  2K2D A;  3ZG6 A;  4AR5 A;  2PYA A;  4RXN A;  1YUZ A;  3NFP I;  3B08 B;  2A6H D;  3KYU A;  2PPT A;  1RYQ A;  2B5I D;  2XJV A;  5JVG 1;  5AN9 H;  2A69 D;  1CAA A;  2AYJ A;  2V0F A;  4JAG A;  2ERS A;  1SMU A;  2A68 D;  5H1S c;  1YV1 A;  2XJQ A;  3SS2 A;  2HR5 A;  2NYD A;  1E8J A;  3PIO 1;  1BE7 A;  3J7Y 1;  1QCV A;  2JI1 A;  4AHX A;  1SMW A;  2XJS A;  1B2O A;  2J9U B;  1T9O A;  3IU3 I;  4K9F A;  1S2Z A;  1RYT A;  4AHY A;  1YK4 A;  2V0E A;  2MS3 A;  2PVE A;  2Z3R B;  1C09 A;  3VPB E;  3LPE B;  4GS7 D;  4AHW A;  4AR4 A;  4V19 6;  4UY8 1;  4LHN A;  3QVD A;  2CKC A;  1VZI A;  1ZRP A;  1DVB A;  3WWN B;  6RXN A;  1FHM A;  5AI3 A;  2GMG A;  1IU5 A;  2ERJ A;  4XXB B;  2QL0 A;  2C6A A;  1OWB A;  4WFN 1;  4YWL A;  2XJP A;  5IY0 A;  1VZG A;  1JYB A;  7RXN A;  1R0F A;  5EIO C;  2LCQ A;  5MLC 3;  4XGH A;  2XJU A;  1SMM A;  1NXG A;  4AI2 A;  2DSX A;  5JVH 1;  1LKO A;  4AI1 A;  3KYX A;  4AR3 A;  4E6Y A;  4ZN1 B;  3PKI A;  5MF6 A;  5DM7 1;  2KKD A;  1LKP A;  1LTL A;  1R0I A;  4U67 1;  2O5J D;  3RZ6 A;  4JAF A;  2VL6 A;  3PKJ A;  4JAE A;  1R0G A;  1IRO A;  1IRN A;  4ME3 A;  1DX8 A;  2H12 A;  5MFP A;  3P2A A;  4YWM A;  1IW7 D;  2XJT A;  1YK5 A;  1VZH A;  1VCX A;  2BE5 D;  1IU6 A;  2PVX A;  1CAD A;  3B0A B;  2M4V A;  2M6P A;  1BQ8 A;  5EIN C;  5GAD c;  3LNL A;  4TVM A;  2JI3 A;  4B8C D;  2CKA A;  2V3B B;  4AHZ A;  1S30 A;  4JAD A;  1B2J A;  1ODH A;  2PSM C;  1BQ9 A;  3RYG A;  1LKM A;  1RWD A;  1YUX A;  3KYV A;  1B71 A;  4LHL A;  4ZN3 B;  2ZIX A;  1T9Q A;  3KYW A;  2RDV A;  1OWC A;  3K35 A;  5MGN A;  1RDV A;  1RB9 A;  3MSU A;  4TPU A;  1T9P A;  1BFY A;  1QYB A;  3WWL A;  5GAH c;  3P8B A;  3KYY A;  1NNQ A;  1S24 A;  2M4Y A;  8RXN A;  1R0J A;  1R0H A;  2C6B A;  3A44 A;  3PWF A;  4POF A;  1FHH A;  5GAE c;  2Z3Q B;  3MPS A;  3PZA A;  4POG A;  3J7Z 1;  2L0Z A;  1B13 A;  2XJR A;  5MFZ A;  5DM6 1;  1H7V A;  5K2M E;  4AI0 A;  2KN9 A;  2JI2 A;  2M6O A;  4AI3 A;  3PIP 1;  5GAG c;  1NXE A;  4G6B A;  3QQC E;  3RZT A;  1Z92 B;  4AR6 A;  5AI2 A;  1RDG A;  1WJV A;  2A6E D;  2CR8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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