5AILA

Human parp9 2nd macrodomain
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
184
structure length
180
Chain Sequence
SMNAMVVNNLTLQIVQGHIEWQTADVIVNSVNPHDITVGPVAKSILQQAGVEMKSEFLATKAKQQLVLVTKGFNLFCKYIYHVLWHSEFPKPQILKHAMKECLEKCIEQNITSISFPALGTGNMEIKKETAAEILFDEVLTFAKDHVKHQLTVKFVIFPTDLEIYKAFSSEMAKRSKMLS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription
molecule keywords POLY [ADP-RIBOSE] POLYMERASE 9
publication title Structure of Parp9 2Nd Macrodomain
rcsb
source organism Homo sapiens
total genus 59
structure length 180
sequence length 184
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-02-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 5ailA00
4X2TA 3IIFA 1VHUA 5FSZA 3H8GA 3GQEA 4ZY0A 1SPVA 3JRUA 5AILA 4ZY2A 3KR4A 5FSUA 5CMSA 4ZYQA 2J9AA 1TXZA 3PEIA 4R7MA 3KQZA 3EJFA 5DUSA 4K0CA 2FXKA 2EEEA 3SIIA 5FSVA 4TU0A 5HOLA 3EWRA 2ACFA 4UMLA 3EW5A 3GPQA 1HJZA 4ABLA 1GYTA 4ZX8A 3T8WA 4JCAA 5FSXA 2X47A 1LCPA 3SIJA 3VFQA 3Q6ZA 3KR5A 4KSIA 2VRIA 4GVWA 4ETJA 1ZR3A 4R76A 4JGKA 5HIHA 4J5QA 2FG1A 3JZTA 4IQYA 4JLLA 3V2BA 4ZY1A 4ZI6A 3EKEA 2AFCA 5CBMA 4D86A 4K3NA 5FSYA 4ETKA 4KYBA 1BPMA 4ABKA 1BLLE 4GUAA 3H8FA 4J4ZA 2FAVA 1LANA 4R6TA 3IIDA 3Q71A 4ZX9A 3KZWA 1LAMA 1TY8A 2DX6A 3EWOA 4J5RA 4ESSA 4JVVA 3V45A 3SIHA 3SIGA 3GPOA 2EWBA 2L8RA 3EWQA 4GVVA 3GQOA 2BFRA 2XD7A 3KQXA 5CB5A 1BPNA 3GPGA 2LGRA 5E3BA 4J5SA 5D8NA 1NJRA 1YD9A 3EJGA 3ETIA 1ZR5A 3H8EA 2BFQA 3EWPA 3IJ3A 5CB3A 1LAPA
chains in the Genus database with same CATH superfamily
4X2TA 3IIFA 1VHUA 5FSZA 3H8GA 3GQEA 4ZY0A 1SPVA 3JRUA 5AILA 4ZY2A 2KQVA 3KR4A 5FSUA 5CMSA 4ZYQA 2J9AA 1TXZA 3PEIA 4R7MA 3KQZA 3EJFA 5DUSA 4K0CA 2FXKA 2EEEA 3SIIA 5FSVA 4TU0A 5HOLA 3EWRA 2ACFA 4UMLA 3EW5A 3GPQA 1HJZA 4ABLA 1GYTA 4ZX8A 3T8WA 4JCAA 5FSXA 2X47A 1LCPA 3SIJA 3VFQA 3Q6ZA 2JZEA 3KR5A 4KSIA 2VRIA 2RNKA 4GVWA 4ETJA 1ZR3A 2W2GA 4R76A 4JGKA 5HIHA 4J5QA 2FG1A 3JZTA 4IQYA 4JLLA 3V2BA 4ZY1A 4ZI6A 3EKEA 2AFCA 5CBMA 4D86A 4K3NA 5FSYA 4ETKA 4KYBA 1BPMA 4ABKA 1BLLE 4GUAA 3H8FA 4J4ZA 2FAVA 1LANA 4R6TA 3IIDA 3Q71A 4ZX9A 3KZWA 2JZFA 2WCTA 1LAMA 1TY8A 2DX6A 3EWOA 4J5RA 4ESSA 4JVVA 3V45A 3SIHA 3SIGA 3GPOA 2EWBA 2L8RA 3EWQA 4GVVA 3GQOA 2BFRA 2XD7A 3KQXA 5CB5A 1BPNA 3GPGA 2LGRA 5E3BA 4J5SA 5D8NA 1NJRA 1YD9A 3EJGA 3ETIA 2JZDA 1ZR5A 3H8EA 2BFQA 3EWPA 3IJ3A 5CB3A 1LAPA
chains in the Genus database with same CATH topology
4X2TA 3IIFA 1VHUA 5FSZA 3H8GA 3GQEA 4ZY0A 1SPVA 3JRUA 5AILA 4ZY2A 3KR4A 5FSUA 5CMSA 4ZYQA 2J9AA 1TXZA 3PEIA 4R7MA 3KQZA 3EJFA 5DUSA 4K0CA 2FXKA 2EEEA 3SIIA 5FSVA 4TU0A 5HOLA 3EWRA 2ACFA 4UMLA 3EW5A 3GPQA 1HJZA 4ABLA 1GYTA 4ZX8A 3T8WA 4JCAA 5FSXA 2X47A 1LCPA 3SIJA 3VFQA 3Q6ZA 3KR5A 4KSIA 2VRIA 4GVWA 4ETJA 1ZR3A 4R76A 4JGKA 5HIHA 4J5QA 2FG1A 3JZTA 4IQYA 4JLLA 3V2BA 4ZY1A 4ZI6A 3EKEA 2AFCA 5CBMA 4D86A 4K3NA 5FSYA 4ETKA 4KYBA 1BPMA 4ABKA 1BLLE 4GUAA 3H8FA 4J4ZA 2FAVA 1LANA 4R6TA 3IIDA 3Q71A 4ZX9A 3KZWA 1LAMA 1TY8A 2DX6A 3EWOA 4J5RA 4ESSA 4JVVA 3V45A 3SIHA 3SIGA 3GPOA 2EWBA 2L8RA 3EWQA 4GVVA 3GQOA 2BFRA 2XD7A 3KQXA 5CB5A 1BPNA 3GPGA 2LGRA 5E3BA 4J5SA 5D8NA 1NJRA 1YD9A 3EJGA 3ETIA 1ZR5A 3H8EA 2BFQA 3EWPA 3IJ3A 5CB3A 1LAPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4X2T A;  3IIF A;  1VHU A;  5FSZ A;  3H8G A;  3GQE A;  4ZY0 A;  1SPV A;  3JRU A;  5AIL A;  4ZY2 A;  3KR4 A;  5FSU A;  5CMS A;  4ZYQ A;  2J9A A;  1TXZ A;  3PEI A;  4R7M A;  3KQZ A;  3EJF A;  5DUS A;  4K0C A;  2FXK A;  2EEE A;  3SII A;  5FSV A;  4TU0 A;  5HOL A;  3EWR A;  2ACF A;  4UML A;  3EW5 A;  3GPQ A;  1HJZ A;  4ABL A;  1GYT A;  4ZX8 A;  3T8W A;  4JCA A;  5FSX A;  2X47 A;  1LCP A;  3SIJ A;  3VFQ A;  3Q6Z A;  3KR5 A;  4KSI A;  2VRI A;  4GVW A;  4ETJ A;  1ZR3 A;  4R76 A;  4JGK A;  5HIH A;  4J5Q A;  2FG1 A;  3JZT A;  4IQY A;  4JLL A;  3V2B A;  4ZY1 A;  4ZI6 A;  3EKE A;  2AFC A;  5CBM A;  4D86 A;  4K3N A;  5FSY A;  4ETK A;  4KYB A;  1BPM A;  4ABK A;  1BLL E;  4GUA A;  3H8F A;  4J4Z A;  2FAV A;  1LAN A;  4R6T A;  3IID A;  3Q71 A;  4ZX9 A;  3KZW A;  1LAM A;  1TY8 A;  2DX6 A;  3EWO A;  4J5R A;  4ESS A;  4JVV A;  3V45 A;  3SIH A;  3SIG A;  3GPO A;  2EWB A;  2L8R A;  3EWQ A;  4GVV A;  3GQO A;  2BFR A;  2XD7 A;  3KQX A;  5CB5 A;  1BPN A;  3GPG A;  2LGR A;  5E3B A;  4J5S A;  5D8N A;  1NJR A;  1YD9 A;  3EJG A;  3ETI A;  1ZR5 A;  3H8E A;  2BFQ A;  3EWP A;  3IJ3 A;  5CB3 A;  1LAP A; 
#chains in the Genus database with same CATH topology
 4X2T A;  3IIF A;  1VHU A;  5FSZ A;  3H8G A;  3GQE A;  4ZY0 A;  1SPV A;  3JRU A;  5AIL A;  4ZY2 A;  2KQV A;  3KR4 A;  5FSU A;  5CMS A;  4ZYQ A;  2J9A A;  1TXZ A;  3PEI A;  4R7M A;  3KQZ A;  3EJF A;  5DUS A;  4K0C A;  2FXK A;  2EEE A;  3SII A;  5FSV A;  4TU0 A;  5HOL A;  3EWR A;  2ACF A;  4UML A;  3EW5 A;  3GPQ A;  1HJZ A;  4ABL A;  1GYT A;  4ZX8 A;  3T8W A;  4JCA A;  5FSX A;  2X47 A;  1LCP A;  3SIJ A;  3VFQ A;  3Q6Z A;  2JZE A;  3KR5 A;  4KSI A;  2VRI A;  2RNK A;  4GVW A;  4ETJ A;  1ZR3 A;  2W2G A;  4R76 A;  4JGK A;  5HIH A;  4J5Q A;  2FG1 A;  3JZT A;  4IQY A;  4JLL A;  3V2B A;  4ZY1 A;  4ZI6 A;  3EKE A;  2AFC A;  5CBM A;  4D86 A;  4K3N A;  5FSY A;  4ETK A;  4KYB A;  1BPM A;  4ABK A;  1BLL E;  4GUA A;  3H8F A;  4J4Z A;  2FAV A;  1LAN A;  4R6T A;  3IID A;  3Q71 A;  4ZX9 A;  3KZW A;  2JZF A;  2WCT A;  1LAM A;  1TY8 A;  2DX6 A;  3EWO A;  4J5R A;  4ESS A;  4JVV A;  3V45 A;  3SIH A;  3SIG A;  3GPO A;  2EWB A;  2L8R A;  3EWQ A;  4GVV A;  3GQO A;  2BFR A;  2XD7 A;  3KQX A;  5CB5 A;  1BPN A;  3GPG A;  2LGR A;  5E3B A;  4J5S A;  5D8N A;  1NJR A;  1YD9 A;  3EJG A;  3ETI A;  2JZD A;  1ZR5 A;  3H8E A;  2BFQ A;  3EWP A;  3IJ3 A;  5CB3 A;  1LAP A; 
#chains in the Genus database with same CATH homology
 4X2T A;  3IIF A;  1VHU A;  5FSZ A;  3H8G A;  3GQE A;  4ZY0 A;  1SPV A;  3JRU A;  5AIL A;  4ZY2 A;  3KR4 A;  5FSU A;  5CMS A;  4ZYQ A;  2J9A A;  1TXZ A;  3PEI A;  4R7M A;  3KQZ A;  3EJF A;  5DUS A;  4K0C A;  2FXK A;  2EEE A;  3SII A;  5FSV A;  4TU0 A;  5HOL A;  3EWR A;  2ACF A;  4UML A;  3EW5 A;  3GPQ A;  1HJZ A;  4ABL A;  1GYT A;  4ZX8 A;  3T8W A;  4JCA A;  5FSX A;  2X47 A;  1LCP A;  3SIJ A;  3VFQ A;  3Q6Z A;  3KR5 A;  4KSI A;  2VRI A;  4GVW A;  4ETJ A;  1ZR3 A;  4R76 A;  4JGK A;  5HIH A;  4J5Q A;  2FG1 A;  3JZT A;  4IQY A;  4JLL A;  3V2B A;  4ZY1 A;  4ZI6 A;  3EKE A;  2AFC A;  5CBM A;  4D86 A;  4K3N A;  5FSY A;  4ETK A;  4KYB A;  1BPM A;  4ABK A;  1BLL E;  4GUA A;  3H8F A;  4J4Z A;  2FAV A;  1LAN A;  4R6T A;  3IID A;  3Q71 A;  4ZX9 A;  3KZW A;  1LAM A;  1TY8 A;  2DX6 A;  3EWO A;  4J5R A;  4ESS A;  4JVV A;  3V45 A;  3SIH A;  3SIG A;  3GPO A;  2EWB A;  2L8R A;  3EWQ A;  4GVV A;  3GQO A;  2BFR A;  2XD7 A;  3KQX A;  5CB5 A;  1BPN A;  3GPG A;  2LGR A;  5E3B A;  4J5S A;  5D8N A;  1NJR A;  1YD9 A;  3EJG A;  3ETI A;  1ZR5 A;  3H8E A;  2BFQ A;  3EWP A;  3IJ3 A;  5CB3 A;  1LAP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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