5AOPA

Sulfite reductase structure reduced with crii edta, 5-coordinate siroheme, siroheme feii, [4fe-4s] +1
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
490
structure length
456
Chain Sequence
b'LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILPVHQMLHSVGLDALNDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords SULFITE REDUCTASE HEMOPROTEIN
molecule tags Oxidoreductase
source organism Escherichia coli
publication title Structures of the siroheme- and Fe4S4-containing active center of sulfite reductase in different states of oxidation: heme activation via reduction-gated exogenous ligand exchange.
pubmed doi rcsb
total genus 156
structure length 456
sequence length 490
ec nomenclature ec 1.8.1.2: Assimilatory sulfite reductase (NADPH).
pdb deposition date 1997-07-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 5aopA01
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 5aopA03
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 5aopA02
2GEPA 3B0NA 4S38A 2XSJA 3OR2A 4S3BA 3VLZA 3VKRA 3MM6A 3MMBB 3MM9B 3B0GA 3B0MA 4G39A 3MMAB 4AOPA 2AOPA 4S39A 3B0JA 3MMBA 4G38A 3B0HA 3VM1A 2AKJA 5GEPA 3MM7B 4S3DA 4S3FA 2XSJB 3MM5A 3MMCB 3OR2B 1ZJ8A 3MM8B 3VKQA 3MM7A 4S23A 5AOPA 3MMCA 3VLYA 3VKTA 2Y0FA 3MM8A 3NOYA 4S3CA 3GEOA 8GEPA 2V4JB 3OR1B 1ZJ9A 3MM6B 4S3AA 3VM0A 7GEPA 3MM9A 4HTRA 3MM5B 2V4JA 3OR1A 3VKSA 3AOPA 4G9PA 3VLXA 3MMAA 6GEPA 1AOPA 4GEPA 3B0LA 4S3EA 3VKPA
chains in the Genus database with same CATH superfamily
2GEPA 3B0NA 4S38A 2XSJA 3OR2A 4S3BA 3VLZA 3VKRA 3MM6A 3MMBB 3MM9B 3B0GA 3B0MA 4G39A 3MMAB 4AOPA 2AOPA 4S39A 3B0JA 3MMBA 4G38A 3B0HA 3VM1A 2AKJA 5GEPA 3MM7B 4S3DA 4S3FA 2XSJB 3MM5A 3MMCB 3OR2B 1ZJ8A 3MM8B 3VKQA 3MM7A 4S23A 5AOPA 3MMCA 3VLYA 3VKTA 2Y0FA 3MM8A 3NOYA 4S3CA 3GEOA 8GEPA 2V4JB 3OR1B 1ZJ9A 3MM6B 4S3AA 3VM0A 7GEPA 3MM9A 4HTRA 3MM5B 2V4JA 3OR1A 3VKSA 3AOPA 4G9PA 3VLXA 3MMAA 6GEPA 1AOPA 4GEPA 3B0LA 4S3EA 3VKPA
chains in the Genus database with same CATH topology
2GEPA 3B0NA 4S38A 2XSJA 3OR2A 4S3BA 3VLZA 3VKRA 3MM6A 3MMBB 3MM9B 3B0GA 3B0MA 4G39A 3MMAB 4AOPA 2AOPA 4S39A 3B0JA 3MMBA 4G38A 3B0HA 3VM1A 2AKJA 5GEPA 3MM7B 4S3DA 4S3FA 2XSJB 3MM5A 3MMCB 3OR2B 1ZJ8A 3MM8B 3VKQA 3MM7A 4S23A 5AOPA 3MMCA 3VLYA 3VKTA 2Y0FA 3MM8A 3NOYA 4S3CA 3GEOA 8GEPA 2V4JB 3OR1B 1ZJ9A 3MM6B 4S3AA 3VM0A 7GEPA 3MM9A 4HTRA 3MM5B 2V4JA 3OR1A 3VKSA 3AOPA 4G9PA 3VLXA 3MMAA 6GEPA 1AOPA 4GEPA 3B0LA 4S3EA 3VKPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GEP A;  3B0N A;  4S38 A;  2XSJ A;  3OR2 A;  4S3B A;  3VLZ A;  3VKR A;  3MM6 A;  3MMB B;  3MM9 B;  3B0G A;  3B0M A;  4G39 A;  3MMA B;  4AOP A;  2AOP A;  4S39 A;  3B0J A;  3MMB A;  4G38 A;  3B0H A;  3VM1 A;  2AKJ A;  5GEP A;  3MM7 B;  4S3D A;  4S3F A;  2XSJ B;  3MM5 A;  3MMC B;  3OR2 B;  1ZJ8 A;  3MM8 B;  3VKQ A;  3MM7 A;  4S23 A;  5AOP A;  3MMC A;  3VLY A;  3VKT A;  2Y0F A;  3MM8 A;  3NOY A;  4S3C A;  3GEO A;  8GEP A;  2V4J B;  3OR1 B;  1ZJ9 A;  3MM6 B;  4S3A A;  3VM0 A;  7GEP A;  3MM9 A;  4HTR A;  3MM5 B;  2V4J A;  3OR1 A;  3VKS A;  3AOP A;  4G9P A;  3VLX A;  3MMA A;  6GEP A;  1AOP A;  4GEP A;  3B0L A;  4S3E A;  3VKP A; 
#chains in the Genus database with same CATH topology
 2GEP A;  3B0N A;  4S38 A;  2XSJ A;  3OR2 A;  4S3B A;  3VLZ A;  3VKR A;  3MM6 A;  3MMB B;  3MM9 B;  3B0G A;  3B0M A;  4G39 A;  3MMA B;  4AOP A;  2AOP A;  4S39 A;  3B0J A;  3MMB A;  4G38 A;  3B0H A;  3VM1 A;  2AKJ A;  5GEP A;  3MM7 B;  4S3D A;  4S3F A;  2XSJ B;  3MM5 A;  3MMC B;  3OR2 B;  1ZJ8 A;  3MM8 B;  3VKQ A;  3MM7 A;  4S23 A;  5AOP A;  3MMC A;  3VLY A;  3VKT A;  2Y0F A;  3MM8 A;  3NOY A;  4S3C A;  3GEO A;  8GEP A;  2V4J B;  3OR1 B;  1ZJ9 A;  3MM6 B;  4S3A A;  3VM0 A;  7GEP A;  3MM9 A;  4HTR A;  3MM5 B;  2V4J A;  3OR1 A;  3VKS A;  3AOP A;  4G9P A;  3VLX A;  3MMA A;  6GEP A;  1AOP A;  4GEP A;  3B0L A;  4S3E A;  3VKP A; 
#chains in the Genus database with same CATH homology
 2GEP A;  3B0N A;  4S38 A;  2XSJ A;  3OR2 A;  4S3B A;  3VLZ A;  3VKR A;  3MM6 A;  3MMB B;  3MM9 B;  3B0G A;  3B0M A;  4G39 A;  3MMA B;  4AOP A;  2AOP A;  4S39 A;  3B0J A;  3MMB A;  4G38 A;  3B0H A;  3VM1 A;  2AKJ A;  5GEP A;  3MM7 B;  4S3D A;  4S3F A;  2XSJ B;  3MM5 A;  3MMC B;  3OR2 B;  1ZJ8 A;  3MM8 B;  3VKQ A;  3MM7 A;  4S23 A;  5AOP A;  3MMC A;  3VLY A;  3VKT A;  2Y0F A;  3MM8 A;  3NOY A;  4S3C A;  3GEO A;  8GEP A;  2V4J B;  3OR1 B;  1ZJ9 A;  3MM6 B;  4S3A A;  3VM0 A;  7GEP A;  3MM9 A;  4HTR A;  3MM5 B;  2V4J A;  3OR1 A;  3VKS A;  3AOP A;  4G9P A;  3VLX A;  3MMA A;  6GEP A;  1AOP A;  4GEP A;  3B0L A;  4S3E A;  3VKP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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