5AOPA

Sulfite reductase structure reduced with crii edta, 5-coordinate siroheme, siroheme feii, [4fe-4s] +1
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
490
structure length
456
Chain Sequence
LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILPVHQMLHSVGLDALNDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of the siroheme- and Fe4S4-containing active center of sulfite reductase in different states of oxidation: heme activation via reduction-gated exogenous ligand exchange.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Oxidoreductase
molecule keywords SULFITE REDUCTASE HEMOPROTEIN
total genus 156
structure length 456
sequence length 490
ec nomenclature ec 1.8.1.2: Assimilatory sulfite reductase (NADPH).
pdb deposition date 1997-07-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 5aopA01
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 5aopA03
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 5aopA02
7GEPA 3MM6B 3OR1A 4S39A 3VM0A 1ZJ8A 3MM7A 3VKPA 1ZJ9A 3MMCA 4S38A 3B0HA 3VLYA 3VM1A 3MM7B 2GEPA 3VKQA 2XSJA 4S3BA 3AOPA 3VKSA 4S3CA 3GEOA 4G38A 4HTRA 3B0JA 4G39A 2V4JA 3MM6A 3OR1B 4AOPA 3MMAA 4S3EA 3MM9A 3OR2B 4GEPA 4S3DA 4G9PA 3MMAB 3MMBB 3VLZA 6GEPA 4S3FA 3VKRA 5AOPA 3B0MA 3MM8A 4S23A 3B0GA 2Y0FA 3MMBA 1AOPA 3B0NA 3MM8B 8GEPA 2V4JB 3MM9B 3MMCB 3NOYA 3VKTA 3MM5B 3OR2A 3B0LA 3VLXA 2AKJA 4S3AA 2XSJB 2AOPA 3MM5A 5GEPA
chains in the Genus database with same CATH superfamily
7GEPA 3MM6B 3OR1A 4S39A 3VM0A 1ZJ8A 3MM7A 3VKPA 1ZJ9A 3MMCA 4S38A 3B0HA 3VLYA 3VM1A 3MM7B 2GEPA 3VKQA 2XSJA 4S3BA 3AOPA 3VKSA 4S3CA 3GEOA 4G38A 4HTRA 3B0JA 4G39A 2V4JA 3MM6A 3OR1B 4AOPA 3MMAA 4S3EA 3MM9A 3OR2B 4GEPA 4S3DA 4G9PA 3MMAB 3MMBB 3VLZA 6GEPA 4S3FA 3VKRA 5AOPA 3B0MA 3MM8A 4S23A 3B0GA 2Y0FA 3MMBA 1AOPA 3B0NA 3MM8B 8GEPA 2V4JB 3MM9B 3MMCB 3NOYA 3VKTA 3MM5B 3OR2A 3B0LA 3VLXA 2AKJA 4S3AA 2XSJB 2AOPA 3MM5A 5GEPA
chains in the Genus database with same CATH topology
7GEPA 3MM6B 3OR1A 4S39A 3VM0A 1ZJ8A 3MM7A 3VKPA 1ZJ9A 3MMCA 4S38A 3B0HA 3VLYA 3VM1A 3MM7B 2GEPA 3VKQA 2XSJA 4S3BA 3AOPA 3VKSA 4S3CA 3GEOA 4G38A 4HTRA 3B0JA 4G39A 2V4JA 3MM6A 3OR1B 4AOPA 3MMAA 4S3EA 3MM9A 3OR2B 4GEPA 4S3DA 4G9PA 3MMAB 3MMBB 3VLZA 6GEPA 4S3FA 3VKRA 5AOPA 3B0MA 3MM8A 4S23A 3B0GA 2Y0FA 3MMBA 1AOPA 3B0NA 3MM8B 8GEPA 2V4JB 3MM9B 3MMCB 3NOYA 3VKTA 3MM5B 3OR2A 3B0LA 3VLXA 2AKJA 4S3AA 2XSJB 2AOPA 3MM5A 5GEPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 7GEP A;  3MM6 B;  3OR1 A;  4S39 A;  3VM0 A;  1ZJ8 A;  3MM7 A;  3VKP A;  1ZJ9 A;  3MMC A;  4S38 A;  3B0H A;  3VLY A;  3VM1 A;  3MM7 B;  2GEP A;  3VKQ A;  2XSJ A;  4S3B A;  3AOP A;  3VKS A;  4S3C A;  3GEO A;  4G38 A;  4HTR A;  3B0J A;  4G39 A;  2V4J A;  3MM6 A;  3OR1 B;  4AOP A;  3MMA A;  4S3E A;  3MM9 A;  3OR2 B;  4GEP A;  4S3D A;  4G9P A;  3MMA B;  3MMB B;  3VLZ A;  6GEP A;  4S3F A;  3VKR A;  5AOP A;  3B0M A;  3MM8 A;  4S23 A;  3B0G A;  2Y0F A;  3MMB A;  1AOP A;  3B0N A;  3MM8 B;  8GEP A;  2V4J B;  3MM9 B;  3MMC B;  3NOY A;  3VKT A;  3MM5 B;  3OR2 A;  3B0L A;  3VLX A;  2AKJ A;  4S3A A;  2XSJ B;  2AOP A;  3MM5 A;  5GEP A; 
#chains in the Genus database with same CATH topology
 7GEP A;  3MM6 B;  3OR1 A;  4S39 A;  3VM0 A;  1ZJ8 A;  3MM7 A;  3VKP A;  1ZJ9 A;  3MMC A;  4S38 A;  3B0H A;  3VLY A;  3VM1 A;  3MM7 B;  2GEP A;  3VKQ A;  2XSJ A;  4S3B A;  3AOP A;  3VKS A;  4S3C A;  3GEO A;  4G38 A;  4HTR A;  3B0J A;  4G39 A;  2V4J A;  3MM6 A;  3OR1 B;  4AOP A;  3MMA A;  4S3E A;  3MM9 A;  3OR2 B;  4GEP A;  4S3D A;  4G9P A;  3MMA B;  3MMB B;  3VLZ A;  6GEP A;  4S3F A;  3VKR A;  5AOP A;  3B0M A;  3MM8 A;  4S23 A;  3B0G A;  2Y0F A;  3MMB A;  1AOP A;  3B0N A;  3MM8 B;  8GEP A;  2V4J B;  3MM9 B;  3MMC B;  3NOY A;  3VKT A;  3MM5 B;  3OR2 A;  3B0L A;  3VLX A;  2AKJ A;  4S3A A;  2XSJ B;  2AOP A;  3MM5 A;  5GEP A; 
#chains in the Genus database with same CATH homology
 7GEP A;  3MM6 B;  3OR1 A;  4S39 A;  3VM0 A;  1ZJ8 A;  3MM7 A;  3VKP A;  1ZJ9 A;  3MMC A;  4S38 A;  3B0H A;  3VLY A;  3VM1 A;  3MM7 B;  2GEP A;  3VKQ A;  2XSJ A;  4S3B A;  3AOP A;  3VKS A;  4S3C A;  3GEO A;  4G38 A;  4HTR A;  3B0J A;  4G39 A;  2V4J A;  3MM6 A;  3OR1 B;  4AOP A;  3MMA A;  4S3E A;  3MM9 A;  3OR2 B;  4GEP A;  4S3D A;  4G9P A;  3MMA B;  3MMB B;  3VLZ A;  6GEP A;  4S3F A;  3VKR A;  5AOP A;  3B0M A;  3MM8 A;  4S23 A;  3B0G A;  2Y0F A;  3MMB A;  1AOP A;  3B0N A;  3MM8 B;  8GEP A;  2V4J B;  3MM9 B;  3MMC B;  3NOY A;  3VKT A;  3MM5 B;  3OR2 A;  3B0L A;  3VLX A;  2AKJ A;  4S3A A;  2XSJ B;  2AOP A;  3MM5 A;  5GEP A; 
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similar chains in the pdb database (?% sequence similarity)

 
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