5AYCA

Crystal structure of ruminococcus albus 4-o-beta-d-mannosyl-d-glucose phosphorylase (ramp1) in complexes with sulfate and 4-o-beta-d-mannosyl-d-glucose
Total Genus 112
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
sequence length
386
structure length
386
Chain Sequence
MIHEKYTEMRNEQEALLSRKNTKTSFYNGIYDRYEHPVLTREHIPLHWRYDLNKETNPFFQERLGINAVFNAGAIKLNDRYCLVARVEGNDRKSFFAVAESDKGTEGFRFRQYPVCLPALTDDETNVYDMRLTQHEDGWIYGVFCVEKSAGTADLSEAVASAGIARTKDLTNWERLPDLVTLRSPQQRNVTLLPEFVDGKYAFYTRPMDGFIETGSGGGIGFGLADDITHAVIDEERMTSIRRYHTITESKNGAGATPIKTERGWLNIAHGVRNTAAGLRYVIYCFVTDLSEPWKVIAEPGGYLIAPFKDERVGDVSNVVFTNGAIVDDNGDVYIYYASSDTRLHVAVSSIDKLLDYAFNTPADALRTAECVKQRCDLIKRNIELL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Ruminococcus albus (strain atcc 27210 / dsm 20455 / jcm 14654 / ncdo 2250 / 7)
publication title Structural insights into the difference in substrate recognition of two mannoside phosphorylases from two GH130 subfamilies.
pubmed doi rcsb
molecule keywords 4-O-beta-D-mannosyl-D-glucose phosphorylase
total genus 112
structure length 386
sequence length 386
ec nomenclature ec 2.4.1.281: 4-O-beta-D-mannosyl-D-glucose phosphorylase.
pdb deposition date 2015-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04041 Glyco_hydro_130 beta-1,4-mannooligosaccharide phosphorylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 5aycA00
3OM2A 2QQUA 4KCAA 4O8OA 3WATA 3BYLA 3KSTA 4KMIA 3WN2A 5AYCA 3QEDA 3LDKA 4KCBA 2ADEA 2X8TA 3VT1A 5JOYA 4ONZA 2EXKA 3WMZA 3AKGA 3CU9A 3VT2A 1Y7BA 5GLOA 4AK7A 2EXJA 4FFIA 4FFFA 5JOWA 4UDKE 1Y9GA 3OM4A 5B6TA 2X8FA 3AKIA 4MLGA 2YFTA 3QEFA 3TAWA 3OM5A 5FK8A 3VT0A 5FMCA 5ANNA 2QQWA 5B6SA 3PIJA 5GLQA 3UGFA 3VSSA 4EQVA 4U6BA 3BYNA 1UV4A 3D5ZA 1GYHA 1W18A 4KC7A 5FMBA 3WN1A 4UDJA 3ZXJA 3P2NA 3VSFA 3QEEA 4COTA 4D47A 3C7GA 4O8NA 2EXHA 3WN0A 2AEYA 5JOXA 2ADDA 4UDGA 3LV4A 3WAUA 3AKFA 4U6DA 3OM7A 3VSZA 1WL7A 5FK7A 1Y4WA 3ZXKA 5A8CA 3LF7A 1GYDB 3KF5A 4N4BA 1YI7A 3UGGA 2VDTA 5GLMA 4FFGA 4PVIA 4UDIA 5FLWA 2B4WA 5FKCA 1GYEB 1YIFA 3QC2A 5AYDA 3RWKX 3QZ4A 3LFIA 3U14A 3ZXLA 1PT2A 3KF3A 2YFSA 4PVAA 2X8SA 3D5YA 3LEMA 5GLLA 5A7VA 1ST8A 1VKDA 5GLRA 3SC7X 4QQSA 5JOZA 3WPYA 4N1IA 3VSRA 3WPUA 4AK5A 3D61A 1OYGA 3WASA 4NOVA 2EXIA 3K1UA 5C0PA 3C7EA 5FMDA 1W2TA 3UGHA 3WMYA 3AKHA 3BYJA 5A8DA 3C7OA 4UDKA 5GLKA 1YRZA 3U75A 5A7VB 5AY9A 4KC8A 3LIHA 3NQHA 4FFHA 3C7HA 2AEZA 4N2RA 2XQRA 3PIGA 3C7FA 4O8PA 3R4YA 3BYKA 3C2UA 3LDRA 3OM6A 4AK6A 5GLNA 3R67A 1UYPA 5FIXA 3D60A 3WPZA 5AYEA 3WPVA 5GLPA 2OXBA 2YFRA 5FKBA 3R4ZA 4N2ZA 2AC1A 2QQVA 3LIGA 1Y9MA
chains in the Genus database with same CATH superfamily
3OM2A 2QQUA 4KCAA 4O8OA 3WATA 3BYLA 3KSTA 4KMIA 3WN2A 5AYCA 3QEDA 3LDKA 4KCBA 2ADEA 2X8TA 3VT1A 5JOYA 4ONZA 2EXKA 3WMZA 3AKGA 3CU9A 3VT2A 1Y7BA 5GLOA 4AK7A 2EXJA 4FFIA 4FFFA 5JOWA 4UDKE 1Y9GA 3OM4A 5B6TA 2X8FA 3AKIA 4MLGA 2YFTA 3QEFA 3TAWA 3OM5A 5FK8A 3VT0A 5FMCA 5ANNA 2QQWA 5B6SA 3PIJA 5GLQA 3UGFA 3VSSA 4EQVA 4U6BA 3BYNA 1UV4A 3D5ZA 1GYHA 1W18A 4KC7A 5FMBA 3WN1A 4UDJA 3ZXJA 5C2MA 3P2NA 3VSFA 3QEEA 4COTA 4D47A 3C7GA 1TL2A 4O8NA 2EXHA 3WN0A 2AEYA 5JOXA 2ADDA 4UDGA 3LV4A 3WAUA 3AKFA 4U6DA 3OM7A 3VSZA 1WL7A 5FK7A 1Y4WA 3ZXKA 5A8CA 3LF7A 1GYDB 3KF5A 4N4BA 1YI7A 3UGGA 2VDTA 5GLMA 4FFGA 4PVIA 4UDIA 5FLWA 2B4WA 5FKCA 1GYEB 1YIFA 3QC2A 5AYDA 3RWKX 3QZ4A 3LFIA 3U14A 3ZXLA 1PT2A 3KF3A 2YFSA 4PVAA 2X8SA 3D5YA 3LEMA 5GLLA 5A7VA 1ST8A 1VKDA 5GLRA 3SC7X 4QQSA 5JOZA 3WPYA 4N1IA 3VSRA 3WPUA 4AK5A 3D61A 1OYGA 3WASA 4NOVA 2EXIA 3K1UA 5C0PA 3C7EA 5FMDA 1W2TA 3UGHA 3WMYA 3AKHA 3BYJA 5A8DA 3C7OA 4UDKA 5GLKA 1YRZA 3U75A 5A7VB 5AY9A 4KC8A 3LIHA 3NQHA 4FFHA 3C7HA 2AEZA 4N2RA 2XQRA 3PIGA 3C7FA 4O8PA 3R4YA 3BYKA 3C2UA 3LDRA 3OM6A 4AK6A 5GLNA 3R67A 1UYPA 5FIXA 3D60A 3WPZA 5AYEA 3WPVA 5GLPA 2OXBA 2YFRA 5FKBA 3R4ZA 4N2ZA 2AC1A 2QQVA 3LIGA 1Y9MA
chains in the Genus database with same CATH topology
3OM2A 2QQUA 4KCAA 4O8OA 3WATA 3BYLA 3KSTA 4KMIA 3WN2A 5AYCA 3QEDA 3LDKA 4KCBA 2ADEA 2X8TA 3VT1A 5JOYA 4ONZA 2EXKA 3WMZA 3AKGA 3CU9A 3VT2A 1Y7BA 5GLOA 4AK7A 2EXJA 4FFIA 4FFFA 5JOWA 4UDKE 1Y9GA 3OM4A 5B6TA 2X8FA 3AKIA 4MLGA 2YFTA 3QEFA 3TAWA 3OM5A 5FK8A 3VT0A 5FMCA 5ANNA 2QQWA 5B6SA 3PIJA 5GLQA 3UGFA 3VSSA 4EQVA 4U6BA 3BYNA 1UV4A 3D5ZA 1GYHA 1W18A 4KC7A 5FMBA 3WN1A 4UDJA 3ZXJA 3P2NA 3VSFA 3QEEA 4COTA 4D47A 3C7GA 4O8NA 2EXHA 3WN0A 2AEYA 5JOXA 2ADDA 4UDGA 3LV4A 3WAUA 3AKFA 4U6DA 3OM7A 3VSZA 1WL7A 5FK7A 1Y4WA 3ZXKA 5A8CA 3LF7A 1GYDB 3KF5A 4N4BA 1YI7A 3UGGA 2VDTA 5GLMA 4FFGA 4PVIA 4UDIA 5FLWA 2B4WA 5FKCA 1GYEB 1YIFA 3QC2A 5AYDA 3RWKX 3QZ4A 3LFIA 3U14A 3ZXLA 1PT2A 3KF3A 2YFSA 4PVAA 2X8SA 3D5YA 3LEMA 5GLLA 5A7VA 1ST8A 1VKDA 5GLRA 3SC7X 4QQSA 5JOZA 3WPYA 4N1IA 3VSRA 3WPUA 4AK5A 3D61A 1OYGA 3WASA 4NOVA 2EXIA 3K1UA 5C0PA 3C7EA 5FMDA 1W2TA 3UGHA 3WMYA 3AKHA 3BYJA 5A8DA 3C7OA 4UDKA 5GLKA 1YRZA 3U75A 5A7VB 5AY9A 4KC8A 3LIHA 3NQHA 4FFHA 3C7HA 2AEZA 4N2RA 2XQRA 3PIGA 3C7FA 4O8PA 3R4YA 3BYKA 3C2UA 3LDRA 3OM6A 4AK6A 5GLNA 3R67A 1UYPA 5FIXA 3D60A 3WPZA 5AYEA 3WPVA 5GLPA 2OXBA 2YFRA 5FKBA 3R4ZA 4N2ZA 2AC1A 2QQVA 3LIGA 1Y9MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OM2 A;  2QQU A;  4KCA A;  4O8O A;  3WAT A;  3BYL A;  3KST A;  4KMI A;  3WN2 A;  5AYC A;  3QED A;  3LDK A;  4KCB A;  2ADE A;  2X8T A;  3VT1 A;  5JOY A;  4ONZ A;  2EXK A;  3WMZ A;  3AKG A;  3CU9 A;  3VT2 A;  1Y7B A;  5GLO A;  4AK7 A;  2EXJ A;  4FFI A;  4FFF A;  5JOW A;  4UDK E;  1Y9G A;  3OM4 A;  5B6T A;  2X8F A;  3AKI A;  4MLG A;  2YFT A;  3QEF A;  3TAW A;  3OM5 A;  5FK8 A;  3VT0 A;  5FMC A;  5ANN A;  2QQW A;  5B6S A;  3PIJ A;  5GLQ A;  3UGF A;  3VSS A;  4EQV A;  4U6B A;  3BYN A;  1UV4 A;  3D5Z A;  1GYH A;  1W18 A;  4KC7 A;  5FMB A;  3WN1 A;  4UDJ A;  3ZXJ A;  3P2N A;  3VSF A;  3QEE A;  4COT A;  4D47 A;  3C7G A;  4O8N A;  2EXH A;  3WN0 A;  2AEY A;  5JOX A;  2ADD A;  4UDG A;  3LV4 A;  3WAU A;  3AKF A;  4U6D A;  3OM7 A;  3VSZ A;  1WL7 A;  5FK7 A;  1Y4W A;  3ZXK A;  5A8C A;  3LF7 A;  1GYD B;  3KF5 A;  4N4B A;  1YI7 A;  3UGG A;  2VDT A;  5GLM A;  4FFG A;  4PVI A;  4UDI A;  5FLW A;  2B4W A;  5FKC A;  1GYE B;  1YIF A;  3QC2 A;  5AYD A;  3RWK X;  3QZ4 A;  3LFI A;  3U14 A;  3ZXL A;  1PT2 A;  3KF3 A;  2YFS A;  4PVA A;  2X8S A;  3D5Y A;  3LEM A;  5GLL A;  5A7V A;  1ST8 A;  1VKD A;  5GLR A;  3SC7 X;  4QQS A;  5JOZ A;  3WPY A;  4N1I A;  3VSR A;  3WPU A;  4AK5 A;  3D61 A;  1OYG A;  3WAS A;  4NOV A;  2EXI A;  3K1U A;  5C0P A;  3C7E A;  5FMD A;  1W2T A;  3UGH A;  3WMY A;  3AKH A;  3BYJ A;  5A8D A;  3C7O A;  4UDK A;  5GLK A;  1YRZ A;  3U75 A;  5A7V B;  5AY9 A;  4KC8 A;  3LIH A;  3NQH A;  4FFH A;  3C7H A;  2AEZ A;  4N2R A;  2XQR A;  3PIG A;  3C7F A;  4O8P A;  3R4Y A;  3BYK A;  3C2U A;  3LDR A;  3OM6 A;  4AK6 A;  5GLN A;  3R67 A;  1UYP A;  5FIX A;  3D60 A;  3WPZ A;  5AYE A;  3WPV A;  5GLP A;  2OXB A;  2YFR A;  5FKB A;  3R4Z A;  4N2Z A;  2AC1 A;  2QQV A;  3LIG A;  1Y9M A; 
#chains in the Genus database with same CATH topology
 3OM2 A;  2QQU A;  4KCA A;  4O8O A;  3WAT A;  3BYL A;  3KST A;  4KMI A;  3WN2 A;  5AYC A;  3QED A;  3LDK A;  4KCB A;  2ADE A;  2X8T A;  3VT1 A;  5JOY A;  4ONZ A;  2EXK A;  3WMZ A;  3AKG A;  3CU9 A;  3VT2 A;  1Y7B A;  5GLO A;  4AK7 A;  2EXJ A;  4FFI A;  4FFF A;  5JOW A;  4UDK E;  1Y9G A;  3OM4 A;  5B6T A;  2X8F A;  3AKI A;  4MLG A;  2YFT A;  3QEF A;  3TAW A;  3OM5 A;  5FK8 A;  3VT0 A;  5FMC A;  5ANN A;  2QQW A;  5B6S A;  3PIJ A;  5GLQ A;  3UGF A;  3VSS A;  4EQV A;  4U6B A;  3BYN A;  1UV4 A;  3D5Z A;  1GYH A;  1W18 A;  4KC7 A;  5FMB A;  3WN1 A;  4UDJ A;  3ZXJ A;  5C2M A;  3P2N A;  3VSF A;  3QEE A;  4COT A;  4D47 A;  3C7G A;  1TL2 A;  4O8N A;  2EXH A;  3WN0 A;  2AEY A;  5JOX A;  2ADD A;  4UDG A;  3LV4 A;  3WAU A;  3AKF A;  4U6D A;  3OM7 A;  3VSZ A;  1WL7 A;  5FK7 A;  1Y4W A;  3ZXK A;  5A8C A;  3LF7 A;  1GYD B;  3KF5 A;  4N4B A;  1YI7 A;  3UGG A;  2VDT A;  5GLM A;  4FFG A;  4PVI A;  4UDI A;  5FLW A;  2B4W A;  5FKC A;  1GYE B;  1YIF A;  3QC2 A;  5AYD A;  3RWK X;  3QZ4 A;  3LFI A;  3U14 A;  3ZXL A;  1PT2 A;  3KF3 A;  2YFS A;  4PVA A;  2X8S A;  3D5Y A;  3LEM A;  5GLL A;  5A7V A;  1ST8 A;  1VKD A;  5GLR A;  3SC7 X;  4QQS A;  5JOZ A;  3WPY A;  4N1I A;  3VSR A;  3WPU A;  4AK5 A;  3D61 A;  1OYG A;  3WAS A;  4NOV A;  2EXI A;  3K1U A;  5C0P A;  3C7E A;  5FMD A;  1W2T A;  3UGH A;  3WMY A;  3AKH A;  3BYJ A;  5A8D A;  3C7O A;  4UDK A;  5GLK A;  1YRZ A;  3U75 A;  5A7V B;  5AY9 A;  4KC8 A;  3LIH A;  3NQH A;  4FFH A;  3C7H A;  2AEZ A;  4N2R A;  2XQR A;  3PIG A;  3C7F A;  4O8P A;  3R4Y A;  3BYK A;  3C2U A;  3LDR A;  3OM6 A;  4AK6 A;  5GLN A;  3R67 A;  1UYP A;  5FIX A;  3D60 A;  3WPZ A;  5AYE A;  3WPV A;  5GLP A;  2OXB A;  2YFR A;  5FKB A;  3R4Z A;  4N2Z A;  2AC1 A;  2QQV A;  3LIG A;  1Y9M A; 
#chains in the Genus database with same CATH homology
 3OM2 A;  2QQU A;  4KCA A;  4O8O A;  3WAT A;  3BYL A;  3KST A;  4KMI A;  3WN2 A;  5AYC A;  3QED A;  3LDK A;  4KCB A;  2ADE A;  2X8T A;  3VT1 A;  5JOY A;  4ONZ A;  2EXK A;  3WMZ A;  3AKG A;  3CU9 A;  3VT2 A;  1Y7B A;  5GLO A;  4AK7 A;  2EXJ A;  4FFI A;  4FFF A;  5JOW A;  4UDK E;  1Y9G A;  3OM4 A;  5B6T A;  2X8F A;  3AKI A;  4MLG A;  2YFT A;  3QEF A;  3TAW A;  3OM5 A;  5FK8 A;  3VT0 A;  5FMC A;  5ANN A;  2QQW A;  5B6S A;  3PIJ A;  5GLQ A;  3UGF A;  3VSS A;  4EQV A;  4U6B A;  3BYN A;  1UV4 A;  3D5Z A;  1GYH A;  1W18 A;  4KC7 A;  5FMB A;  3WN1 A;  4UDJ A;  3ZXJ A;  3P2N A;  3VSF A;  3QEE A;  4COT A;  4D47 A;  3C7G A;  4O8N A;  2EXH A;  3WN0 A;  2AEY A;  5JOX A;  2ADD A;  4UDG A;  3LV4 A;  3WAU A;  3AKF A;  4U6D A;  3OM7 A;  3VSZ A;  1WL7 A;  5FK7 A;  1Y4W A;  3ZXK A;  5A8C A;  3LF7 A;  1GYD B;  3KF5 A;  4N4B A;  1YI7 A;  3UGG A;  2VDT A;  5GLM A;  4FFG A;  4PVI A;  4UDI A;  5FLW A;  2B4W A;  5FKC A;  1GYE B;  1YIF A;  3QC2 A;  5AYD A;  3RWK X;  3QZ4 A;  3LFI A;  3U14 A;  3ZXL A;  1PT2 A;  3KF3 A;  2YFS A;  4PVA A;  2X8S A;  3D5Y A;  3LEM A;  5GLL A;  5A7V A;  1ST8 A;  1VKD A;  5GLR A;  3SC7 X;  4QQS A;  5JOZ A;  3WPY A;  4N1I A;  3VSR A;  3WPU A;  4AK5 A;  3D61 A;  1OYG A;  3WAS A;  4NOV A;  2EXI A;  3K1U A;  5C0P A;  3C7E A;  5FMD A;  1W2T A;  3UGH A;  3WMY A;  3AKH A;  3BYJ A;  5A8D A;  3C7O A;  4UDK A;  5GLK A;  1YRZ A;  3U75 A;  5A7V B;  5AY9 A;  4KC8 A;  3LIH A;  3NQH A;  4FFH A;  3C7H A;  2AEZ A;  4N2R A;  2XQR A;  3PIG A;  3C7F A;  4O8P A;  3R4Y A;  3BYK A;  3C2U A;  3LDR A;  3OM6 A;  4AK6 A;  5GLN A;  3R67 A;  1UYP A;  5FIX A;  3D60 A;  3WPZ A;  5AYE A;  3WPV A;  5GLP A;  2OXB A;  2YFR A;  5FKB A;  3R4Z A;  4N2Z A;  2AC1 A;  2QQV A;  3LIG A;  1Y9M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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