5AYDA

Crystal structure of ruminococcus albus beta-(1,4)-mannooligosaccharide phosphorylase (ramp2) in complexes with phosphate
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
335
structure length
335
Chain Sequence
MKTQIINGVSLPNIPWQDKPADCKDVIWRYDANPIIPRDQLPTSNSIFNSAVVPYESEKGKFAGVFRVDDKCRNMELHAGFSKDGIHWDINPDRIVFEQAEKSTEEVNQWGYGYDPRVCFIEDRFWVTWCNAYGWKPTIGVAYTFDFKTFYQCENAFLPFNRNGVLFPRKINGKYVMFSRPSDSGHTPFGDMFISQSPDMKYWGEHRHVMGPLRAWESKKIGAGPIPIETSEGWLCFYHGVLESCNGFVYSFSACILDKDEPWKVKYRCAEYLLSPQKIYECVGDVQNVTFPCATLVDADTGRIAIYYGCADTCVSMAFTTVDDVVDYVKSHSSV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Beta-1,4-mannooligosaccharide phosphorylase
publication title Structural insights into the difference in substrate recognition of two mannoside phosphorylases from two GH130 subfamilies.
pubmed doi rcsb
source organism Ruminococcus albus (strain atcc 27210 / dsm 20455 / jcm 14654 / ncdo 2250 / 7)
total genus 86
structure length 335
sequence length 335
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.4.1.319: Beta-1,4-mannooligosaccharide phosphorylase.
pdb deposition date 2015-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04041 Glyco_hydro_130 beta-1,4-mannooligosaccharide phosphorylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 5aydA00
1Y9MA 3OM2A 5FK8A 5C0PA 3U75A 4AK7A 3LIHA 3AKIA 3LV4A 4KCBA 5GLQA 1Y9GA 4UDGA 5ANNA 5GLRA 4N2ZA 2YFRA 5FKCA 3LF7A 5JOYA 3QEEA 2YFSA 3WATA 2X8TA 3BYLA 3C7FA 2ADEA 2QQVA 5FKBA 4D47A 3UGGA 3U14A 4N2RA 4EQVA 3QEDA 5FMCA 3SC7X 5JOXA 3WN1A 2OXBA 4FFFA 3WPYA 5AYEA 3C7GA 5FLWA 3PIJA 5AYCA 3KF5A 1YI7A 4N4BA 4PVIA 5GLOA 3AKFA 5A8CA 5GLMA 4UDJA 3PIGA 2QQWA 3ZXJA 2EXIA 2AC1A 4KC8A 3K1UA 1VKDA 3AKGA 4QQSA 3C7HA 3VT2A 2EXKA 3TAWA 3VSRA 4ONZA 3WMYA 3D61A 3CU9A 2ADDA 5B6SA 3D5ZA 4UDKE 3VSZA 5GLNA 3NQHA 3WASA 4MLGA 4KMIA 3OM5A 4U6BA 5FK7A 4FFGA 4O8PA 3WPZA 1OYGA 5GLKA 3C7EA 3OM7A 3ZXKA 5FIXA 3WN0A 4AK6A 1GYEB 1ST8A 3WN2A 5FMDA 2AEYA 4FFHA 4UDIA 1W2TA 4N1IA 3UGFA 4U6DA 3RWKX 2EXHA 1UYPA 4O8OA 3LFIA 3UGHA 3WMZA 3LEMA 3VT1A 3WPUA 1UV4A 4PVAA 4KCAA 3BYNA 3LDRA 5AYDA 4NOVA 3WAUA 3OM4A 2VDTA 3LDKA 5JOWA 1Y7BA 3R4ZA 5A7VB 3R4YA 3WPVA 3BYKA 3C7OA 3VSFA 3LIGA 1WL7A 3P2NA 5FMBA 2YFTA 4AK5A 3D5YA 1YIFA 3QEFA 3QC2A 5JOZA 4O8NA 1GYDB 3KF3A 2QQUA 1YRZA 4KC7A 2X8FA 5A8DA 4FFIA 4UDKA 5GLPA 3ZXLA 2AEZA 1PT2A 3R67A 1Y4WA 5A7VA 5GLLA 3VSSA 4COTA 3AKHA 3KSTA 1GYHA 2X8SA 3BYJA 2EXJA 3QZ4A 3D60A 5AY9A 3OM6A 3VT0A 2XQRA 5B6TA 2B4WA 1W18A 3C2UA
chains in the Genus database with same CATH superfamily
1Y9MA 3OM2A 5FK8A 5C0PA 3U75A 4AK7A 3LIHA 3AKIA 3LV4A 4KCBA 5GLQA 1Y9GA 4UDGA 5ANNA 5GLRA 4N2ZA 2YFRA 5FKCA 3LF7A 5JOYA 3QEEA 2YFSA 3WATA 2X8TA 3BYLA 3C7FA 2ADEA 2QQVA 5FKBA 4D47A 3UGGA 3U14A 4N2RA 4EQVA 3QEDA 5FMCA 3SC7X 5JOXA 3WN1A 2OXBA 4FFFA 3WPYA 5AYEA 3C7GA 5FLWA 3PIJA 5AYCA 3KF5A 1YI7A 4N4BA 4PVIA 5GLOA 3AKFA 5A8CA 5C2MA 5GLMA 4UDJA 3PIGA 2QQWA 3ZXJA 2EXIA 2AC1A 4KC8A 3K1UA 1VKDA 3AKGA 4QQSA 3C7HA 3VT2A 2EXKA 3TAWA 3VSRA 4ONZA 3WMYA 3D61A 3CU9A 2ADDA 5B6SA 3D5ZA 4UDKE 3VSZA 5GLNA 3NQHA 3WASA 4MLGA 4KMIA 3OM5A 4U6BA 5FK7A 4FFGA 4O8PA 3WPZA 1OYGA 5GLKA 3C7EA 3OM7A 3ZXKA 5FIXA 3WN0A 4AK6A 1GYEB 1ST8A 3WN2A 5FMDA 2AEYA 4FFHA 4UDIA 1W2TA 4N1IA 3UGFA 4U6DA 3RWKX 2EXHA 1UYPA 4O8OA 3LFIA 3UGHA 3WMZA 3LEMA 3VT1A 3WPUA 1UV4A 4PVAA 4KCAA 3BYNA 3LDRA 5AYDA 4NOVA 3WAUA 3OM4A 2VDTA 3LDKA 5JOWA 1Y7BA 3R4ZA 5A7VB 3R4YA 3WPVA 3BYKA 3C7OA 3VSFA 3LIGA 1WL7A 3P2NA 5FMBA 2YFTA 4AK5A 3D5YA 1YIFA 3QEFA 3QC2A 5JOZA 4O8NA 1GYDB 3KF3A 2QQUA 1YRZA 4KC7A 2X8FA 5A8DA 4FFIA 4UDKA 5GLPA 3ZXLA 2AEZA 1PT2A 3R67A 1Y4WA 5A7VA 5GLLA 3VSSA 4COTA 3AKHA 3KSTA 1GYHA 2X8SA 3BYJA 2EXJA 3QZ4A 3D60A 5AY9A 3OM6A 1TL2A 3VT0A 2XQRA 5B6TA 2B4WA 1W18A 3C2UA
chains in the Genus database with same CATH topology
1Y9MA 3OM2A 5FK8A 5C0PA 3U75A 4AK7A 3LIHA 3AKIA 3LV4A 4KCBA 5GLQA 1Y9GA 4UDGA 5ANNA 5GLRA 4N2ZA 2YFRA 5FKCA 3LF7A 5JOYA 3QEEA 2YFSA 3WATA 2X8TA 3BYLA 3C7FA 2ADEA 2QQVA 5FKBA 4D47A 3UGGA 3U14A 4N2RA 4EQVA 3QEDA 5FMCA 3SC7X 5JOXA 3WN1A 2OXBA 4FFFA 3WPYA 5AYEA 3C7GA 5FLWA 3PIJA 5AYCA 3KF5A 1YI7A 4N4BA 4PVIA 5GLOA 3AKFA 5A8CA 5GLMA 4UDJA 3PIGA 2QQWA 3ZXJA 2EXIA 2AC1A 4KC8A 3K1UA 1VKDA 3AKGA 4QQSA 3C7HA 3VT2A 2EXKA 3TAWA 3VSRA 4ONZA 3WMYA 3D61A 3CU9A 2ADDA 5B6SA 3D5ZA 4UDKE 3VSZA 5GLNA 3NQHA 3WASA 4MLGA 4KMIA 3OM5A 4U6BA 5FK7A 4FFGA 4O8PA 3WPZA 1OYGA 5GLKA 3C7EA 3OM7A 3ZXKA 5FIXA 3WN0A 4AK6A 1GYEB 1ST8A 3WN2A 5FMDA 2AEYA 4FFHA 4UDIA 1W2TA 4N1IA 3UGFA 4U6DA 3RWKX 2EXHA 1UYPA 4O8OA 3LFIA 3UGHA 3WMZA 3LEMA 3VT1A 3WPUA 1UV4A 4PVAA 4KCAA 3BYNA 3LDRA 5AYDA 4NOVA 3WAUA 3OM4A 2VDTA 3LDKA 5JOWA 1Y7BA 3R4ZA 5A7VB 3R4YA 3WPVA 3BYKA 3C7OA 3VSFA 3LIGA 1WL7A 3P2NA 5FMBA 2YFTA 4AK5A 3D5YA 1YIFA 3QEFA 3QC2A 5JOZA 4O8NA 1GYDB 3KF3A 2QQUA 1YRZA 4KC7A 2X8FA 5A8DA 4FFIA 4UDKA 5GLPA 3ZXLA 2AEZA 1PT2A 3R67A 1Y4WA 5A7VA 5GLLA 3VSSA 4COTA 3AKHA 3KSTA 1GYHA 2X8SA 3BYJA 2EXJA 3QZ4A 3D60A 5AY9A 3OM6A 3VT0A 2XQRA 5B6TA 2B4WA 1W18A 3C2UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y9M A;  3OM2 A;  5FK8 A;  5C0P A;  3U75 A;  4AK7 A;  3LIH A;  3AKI A;  3LV4 A;  4KCB A;  5GLQ A;  1Y9G A;  4UDG A;  5ANN A;  5GLR A;  4N2Z A;  2YFR A;  5FKC A;  3LF7 A;  5JOY A;  3QEE A;  2YFS A;  3WAT A;  2X8T A;  3BYL A;  3C7F A;  2ADE A;  2QQV A;  5FKB A;  4D47 A;  3UGG A;  3U14 A;  4N2R A;  4EQV A;  3QED A;  5FMC A;  3SC7 X;  5JOX A;  3WN1 A;  2OXB A;  4FFF A;  3WPY A;  5AYE A;  3C7G A;  5FLW A;  3PIJ A;  5AYC A;  3KF5 A;  1YI7 A;  4N4B A;  4PVI A;  5GLO A;  3AKF A;  5A8C A;  5GLM A;  4UDJ A;  3PIG A;  2QQW A;  3ZXJ A;  2EXI A;  2AC1 A;  4KC8 A;  3K1U A;  1VKD A;  3AKG A;  4QQS A;  3C7H A;  3VT2 A;  2EXK A;  3TAW A;  3VSR A;  4ONZ A;  3WMY A;  3D61 A;  3CU9 A;  2ADD A;  5B6S A;  3D5Z A;  4UDK E;  3VSZ A;  5GLN A;  3NQH A;  3WAS A;  4MLG A;  4KMI A;  3OM5 A;  4U6B A;  5FK7 A;  4FFG A;  4O8P A;  3WPZ A;  1OYG A;  5GLK A;  3C7E A;  3OM7 A;  3ZXK A;  5FIX A;  3WN0 A;  4AK6 A;  1GYE B;  1ST8 A;  3WN2 A;  5FMD A;  2AEY A;  4FFH A;  4UDI A;  1W2T A;  4N1I A;  3UGF A;  4U6D A;  3RWK X;  2EXH A;  1UYP A;  4O8O A;  3LFI A;  3UGH A;  3WMZ A;  3LEM A;  3VT1 A;  3WPU A;  1UV4 A;  4PVA A;  4KCA A;  3BYN A;  3LDR A;  5AYD A;  4NOV A;  3WAU A;  3OM4 A;  2VDT A;  3LDK A;  5JOW A;  1Y7B A;  3R4Z A;  5A7V B;  3R4Y A;  3WPV A;  3BYK A;  3C7O A;  3VSF A;  3LIG A;  1WL7 A;  3P2N A;  5FMB A;  2YFT A;  4AK5 A;  3D5Y A;  1YIF A;  3QEF A;  3QC2 A;  5JOZ A;  4O8N A;  1GYD B;  3KF3 A;  2QQU A;  1YRZ A;  4KC7 A;  2X8F A;  5A8D A;  4FFI A;  4UDK A;  5GLP A;  3ZXL A;  2AEZ A;  1PT2 A;  3R67 A;  1Y4W A;  5A7V A;  5GLL A;  3VSS A;  4COT A;  3AKH A;  3KST A;  1GYH A;  2X8S A;  3BYJ A;  2EXJ A;  3QZ4 A;  3D60 A;  5AY9 A;  3OM6 A;  3VT0 A;  2XQR A;  5B6T A;  2B4W A;  1W18 A;  3C2U A; 
#chains in the Genus database with same CATH topology
 1Y9M A;  3OM2 A;  5FK8 A;  5C0P A;  3U75 A;  4AK7 A;  3LIH A;  3AKI A;  3LV4 A;  4KCB A;  5GLQ A;  1Y9G A;  4UDG A;  5ANN A;  5GLR A;  4N2Z A;  2YFR A;  5FKC A;  3LF7 A;  5JOY A;  3QEE A;  2YFS A;  3WAT A;  2X8T A;  3BYL A;  3C7F A;  2ADE A;  2QQV A;  5FKB A;  4D47 A;  3UGG A;  3U14 A;  4N2R A;  4EQV A;  3QED A;  5FMC A;  3SC7 X;  5JOX A;  3WN1 A;  2OXB A;  4FFF A;  3WPY A;  5AYE A;  3C7G A;  5FLW A;  3PIJ A;  5AYC A;  3KF5 A;  1YI7 A;  4N4B A;  4PVI A;  5GLO A;  3AKF A;  5A8C A;  5C2M A;  5GLM A;  4UDJ A;  3PIG A;  2QQW A;  3ZXJ A;  2EXI A;  2AC1 A;  4KC8 A;  3K1U A;  1VKD A;  3AKG A;  4QQS A;  3C7H A;  3VT2 A;  2EXK A;  3TAW A;  3VSR A;  4ONZ A;  3WMY A;  3D61 A;  3CU9 A;  2ADD A;  5B6S A;  3D5Z A;  4UDK E;  3VSZ A;  5GLN A;  3NQH A;  3WAS A;  4MLG A;  4KMI A;  3OM5 A;  4U6B A;  5FK7 A;  4FFG A;  4O8P A;  3WPZ A;  1OYG A;  5GLK A;  3C7E A;  3OM7 A;  3ZXK A;  5FIX A;  3WN0 A;  4AK6 A;  1GYE B;  1ST8 A;  3WN2 A;  5FMD A;  2AEY A;  4FFH A;  4UDI A;  1W2T A;  4N1I A;  3UGF A;  4U6D A;  3RWK X;  2EXH A;  1UYP A;  4O8O A;  3LFI A;  3UGH A;  3WMZ A;  3LEM A;  3VT1 A;  3WPU A;  1UV4 A;  4PVA A;  4KCA A;  3BYN A;  3LDR A;  5AYD A;  4NOV A;  3WAU A;  3OM4 A;  2VDT A;  3LDK A;  5JOW A;  1Y7B A;  3R4Z A;  5A7V B;  3R4Y A;  3WPV A;  3BYK A;  3C7O A;  3VSF A;  3LIG A;  1WL7 A;  3P2N A;  5FMB A;  2YFT A;  4AK5 A;  3D5Y A;  1YIF A;  3QEF A;  3QC2 A;  5JOZ A;  4O8N A;  1GYD B;  3KF3 A;  2QQU A;  1YRZ A;  4KC7 A;  2X8F A;  5A8D A;  4FFI A;  4UDK A;  5GLP A;  3ZXL A;  2AEZ A;  1PT2 A;  3R67 A;  1Y4W A;  5A7V A;  5GLL A;  3VSS A;  4COT A;  3AKH A;  3KST A;  1GYH A;  2X8S A;  3BYJ A;  2EXJ A;  3QZ4 A;  3D60 A;  5AY9 A;  3OM6 A;  1TL2 A;  3VT0 A;  2XQR A;  5B6T A;  2B4W A;  1W18 A;  3C2U A; 
#chains in the Genus database with same CATH homology
 1Y9M A;  3OM2 A;  5FK8 A;  5C0P A;  3U75 A;  4AK7 A;  3LIH A;  3AKI A;  3LV4 A;  4KCB A;  5GLQ A;  1Y9G A;  4UDG A;  5ANN A;  5GLR A;  4N2Z A;  2YFR A;  5FKC A;  3LF7 A;  5JOY A;  3QEE A;  2YFS A;  3WAT A;  2X8T A;  3BYL A;  3C7F A;  2ADE A;  2QQV A;  5FKB A;  4D47 A;  3UGG A;  3U14 A;  4N2R A;  4EQV A;  3QED A;  5FMC A;  3SC7 X;  5JOX A;  3WN1 A;  2OXB A;  4FFF A;  3WPY A;  5AYE A;  3C7G A;  5FLW A;  3PIJ A;  5AYC A;  3KF5 A;  1YI7 A;  4N4B A;  4PVI A;  5GLO A;  3AKF A;  5A8C A;  5GLM A;  4UDJ A;  3PIG A;  2QQW A;  3ZXJ A;  2EXI A;  2AC1 A;  4KC8 A;  3K1U A;  1VKD A;  3AKG A;  4QQS A;  3C7H A;  3VT2 A;  2EXK A;  3TAW A;  3VSR A;  4ONZ A;  3WMY A;  3D61 A;  3CU9 A;  2ADD A;  5B6S A;  3D5Z A;  4UDK E;  3VSZ A;  5GLN A;  3NQH A;  3WAS A;  4MLG A;  4KMI A;  3OM5 A;  4U6B A;  5FK7 A;  4FFG A;  4O8P A;  3WPZ A;  1OYG A;  5GLK A;  3C7E A;  3OM7 A;  3ZXK A;  5FIX A;  3WN0 A;  4AK6 A;  1GYE B;  1ST8 A;  3WN2 A;  5FMD A;  2AEY A;  4FFH A;  4UDI A;  1W2T A;  4N1I A;  3UGF A;  4U6D A;  3RWK X;  2EXH A;  1UYP A;  4O8O A;  3LFI A;  3UGH A;  3WMZ A;  3LEM A;  3VT1 A;  3WPU A;  1UV4 A;  4PVA A;  4KCA A;  3BYN A;  3LDR A;  5AYD A;  4NOV A;  3WAU A;  3OM4 A;  2VDT A;  3LDK A;  5JOW A;  1Y7B A;  3R4Z A;  5A7V B;  3R4Y A;  3WPV A;  3BYK A;  3C7O A;  3VSF A;  3LIG A;  1WL7 A;  3P2N A;  5FMB A;  2YFT A;  4AK5 A;  3D5Y A;  1YIF A;  3QEF A;  3QC2 A;  5JOZ A;  4O8N A;  1GYD B;  3KF3 A;  2QQU A;  1YRZ A;  4KC7 A;  2X8F A;  5A8D A;  4FFI A;  4UDK A;  5GLP A;  3ZXL A;  2AEZ A;  1PT2 A;  3R67 A;  1Y4W A;  5A7V A;  5GLL A;  3VSS A;  4COT A;  3AKH A;  3KST A;  1GYH A;  2X8S A;  3BYJ A;  2EXJ A;  3QZ4 A;  3D60 A;  5AY9 A;  3OM6 A;  3VT0 A;  2XQR A;  5B6T A;  2B4W A;  1W18 A;  3C2U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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