5B1BA

Bovine heart cytochrome c oxidase in the fully reduced state at 1.6 angstrom resolution
Total Genus 208
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
208
sequence length
513
structure length
513
Chain Sequence
FINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Cytochrome c oxidase subunit 1
publication title The Mg2+-containing Water Cluster of Mammalian Cytochrome c Oxidase Collects Four Pumping Proton Equivalents in Each Catalytic Cycle.
pubmed doi rcsb
total genus 208
structure length 513
sequence length 513
chains with identical sequence N
ec nomenclature ec 1.9.3.1: Cytochrome-c oxidase.
pdb deposition date 2015-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00115 COX1 Cytochrome C and Quinol oxidase polypeptide I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.210.10 Mainly Alpha Up-down Bundle Cytochrome C Oxidase; Chain A Cytochrome c oxidase-like, subunit I domain 5b1bA00
3FYIA 2EINA 3HB3A 1OCCA 3EH3A 4XYDA 5B3SA 2GSMA 3AYGA 1V54A 4FA7A 4FAAA 4GP4A 5B1AA 4G7RA 4G7SA 4GP5A 2QPDA 3QJRA 1OCOA 4N4YA 2EIJA 3OMNA 3ASNA 4G72A 1FFTA 3EHBA 3QJUA 3QJSA 3OMIA 1M57A 3MK7A 2OCCA 4G7QA 1M56A 3X2QA 3AG1A 1OCRA 2EIMA 3ABMA 4G70A 2DYRA 3S8FA 3AG2A 3ASOA 3OM3A 3S3BA 3S8GA 1QLEA 3O0RB 2Y69A 5B1BA 2YEVA 5DJQA 3WFBB 3S3DA 2EILA 3FYEA 3AG3A 2QPEA 5IY5A 3EH5A 3OMAA 3WFDB 3S3CA 1AR1A 3ABLA 4G71A 3QJTA 1OCZA 3AYFA 3QJQA 2EIKA 1EHKA 2ZXWA 3DTUA 3EH4A 4GP8A 3QJVA 3WFCB 1XMEA 3WFEB 3WG7A 3BVDA 2DYSA 3ABKA 1V55A 3AG4A
chains in the Genus database with same CATH superfamily
3FYIA 2EINA 3HB3A 1OCCA 3EH3A 4XYDA 5B3SA 2GSMA 3AYGA 1V54A 4FA7A 4FAAA 4GP4A 5B1AA 4G7RA 4G7SA 4GP5A 2QPDA 3QJRA 1OCOA 4N4YA 2EIJA 3OMNA 3ASNA 4G72A 1FFTA 3EHBA 3QJUA 3QJSA 3OMIA 1M57A 3MK7A 2OCCA 4G7QA 1M56A 3X2QA 3AG1A 1OCRA 2EIMA 3ABMA 4G70A 2DYRA 3S8FA 3AG2A 3ASOA 3OM3A 3S3BA 3S8GA 1QLEA 3O0RB 2Y69A 5B1BA 2YEVA 5DJQA 3WFBB 3S3DA 2EILA 3FYEA 3AG3A 2QPEA 5IY5A 3EH5A 3OMAA 3WFDB 3S3CA 1AR1A 3ABLA 4G71A 3QJTA 1OCZA 3AYFA 3QJQA 2EIKA 1EHKA 2ZXWA 3DTUA 3EH4A 4GP8A 3QJVA 3WFCB 1XMEA 3WFEB 3WG7A 3BVDA 2DYSA 3ABKA 1V55A 3AG4A
chains in the Genus database with same CATH topology
3FYIA 2EINA 3HB3A 1OCCA 3EH3A 4XYDA 5B3SA 2GSMA 3AYGA 1V54A 4FA7A 4FAAA 4GP4A 5B1AA 4G7RA 4G7SA 4GP5A 2QPDA 3QJRA 1OCOA 4N4YA 2EIJA 3OMNA 3ASNA 4G72A 1FFTA 3EHBA 3QJUA 3QJSA 3OMIA 1M57A 3MK7A 2OCCA 4G7QA 1M56A 3X2QA 3AG1A 1OCRA 2EIMA 3ABMA 4G70A 2DYRA 3S8FA 3AG2A 3ASOA 3OM3A 3S3BA 3S8GA 1QLEA 3O0RB 2Y69A 5B1BA 2YEVA 5DJQA 3WFBB 3S3DA 2EILA 3FYEA 3AG3A 2QPEA 5IY5A 3EH5A 3OMAA 3WFDB 3S3CA 1AR1A 3ABLA 4G71A 3QJTA 1OCZA 3AYFA 3QJQA 2EIKA 1EHKA 2ZXWA 3DTUA 3EH4A 4GP8A 3QJVA 3WFCB 1XMEA 3WFEB 3WG7A 3BVDA 2DYSA 3ABKA 1V55A 3AG4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FYI A;  2EIN A;  3HB3 A;  1OCC A;  3EH3 A;  4XYD A;  5B3S A;  2GSM A;  3AYG A;  1V54 A;  4FA7 A;  4FAA A;  4GP4 A;  5B1A A;  4G7R A;  4G7S A;  4GP5 A;  2QPD A;  3QJR A;  1OCO A;  4N4Y A;  2EIJ A;  3OMN A;  3ASN A;  4G72 A;  1FFT A;  3EHB A;  3QJU A;  3QJS A;  3OMI A;  1M57 A;  3MK7 A;  2OCC A;  4G7Q A;  1M56 A;  3X2Q A;  3AG1 A;  1OCR A;  2EIM A;  3ABM A;  4G70 A;  2DYR A;  3S8F A;  3AG2 A;  3ASO A;  3OM3 A;  3S3B A;  3S8G A;  1QLE A;  3O0R B;  2Y69 A;  5B1B A;  2YEV A;  5DJQ A;  3WFB B;  3S3D A;  2EIL A;  3FYE A;  3AG3 A;  2QPE A;  5IY5 A;  3EH5 A;  3OMA A;  3WFD B;  3S3C A;  1AR1 A;  3ABL A;  4G71 A;  3QJT A;  1OCZ A;  3AYF A;  3QJQ A;  2EIK A;  1EHK A;  2ZXW A;  3DTU A;  3EH4 A;  4GP8 A;  3QJV A;  3WFC B;  1XME A;  3WFE B;  3WG7 A;  3BVD A;  2DYS A;  3ABK A;  1V55 A;  3AG4 A; 
#chains in the Genus database with same CATH topology
 3FYI A;  2EIN A;  3HB3 A;  1OCC A;  3EH3 A;  4XYD A;  5B3S A;  2GSM A;  3AYG A;  1V54 A;  4FA7 A;  4FAA A;  4GP4 A;  5B1A A;  4G7R A;  4G7S A;  4GP5 A;  2QPD A;  3QJR A;  1OCO A;  4N4Y A;  2EIJ A;  3OMN A;  3ASN A;  4G72 A;  1FFT A;  3EHB A;  3QJU A;  3QJS A;  3OMI A;  1M57 A;  3MK7 A;  2OCC A;  4G7Q A;  1M56 A;  3X2Q A;  3AG1 A;  1OCR A;  2EIM A;  3ABM A;  4G70 A;  2DYR A;  3S8F A;  3AG2 A;  3ASO A;  3OM3 A;  3S3B A;  3S8G A;  1QLE A;  3O0R B;  2Y69 A;  5B1B A;  2YEV A;  5DJQ A;  3WFB B;  3S3D A;  2EIL A;  3FYE A;  3AG3 A;  2QPE A;  5IY5 A;  3EH5 A;  3OMA A;  3WFD B;  3S3C A;  1AR1 A;  3ABL A;  4G71 A;  3QJT A;  1OCZ A;  3AYF A;  3QJQ A;  2EIK A;  1EHK A;  2ZXW A;  3DTU A;  3EH4 A;  4GP8 A;  3QJV A;  3WFC B;  1XME A;  3WFE B;  3WG7 A;  3BVD A;  2DYS A;  3ABK A;  1V55 A;  3AG4 A; 
#chains in the Genus database with same CATH homology
 3FYI A;  2EIN A;  3HB3 A;  1OCC A;  3EH3 A;  4XYD A;  5B3S A;  2GSM A;  3AYG A;  1V54 A;  4FA7 A;  4FAA A;  4GP4 A;  5B1A A;  4G7R A;  4G7S A;  4GP5 A;  2QPD A;  3QJR A;  1OCO A;  4N4Y A;  2EIJ A;  3OMN A;  3ASN A;  4G72 A;  1FFT A;  3EHB A;  3QJU A;  3QJS A;  3OMI A;  1M57 A;  3MK7 A;  2OCC A;  4G7Q A;  1M56 A;  3X2Q A;  3AG1 A;  1OCR A;  2EIM A;  3ABM A;  4G70 A;  2DYR A;  3S8F A;  3AG2 A;  3ASO A;  3OM3 A;  3S3B A;  3S8G A;  1QLE A;  3O0R B;  2Y69 A;  5B1B A;  2YEV A;  5DJQ A;  3WFB B;  3S3D A;  2EIL A;  3FYE A;  3AG3 A;  2QPE A;  5IY5 A;  3EH5 A;  3OMA A;  3WFD B;  3S3C A;  1AR1 A;  3ABL A;  4G71 A;  3QJT A;  1OCZ A;  3AYF A;  3QJQ A;  2EIK A;  1EHK A;  2ZXW A;  3DTU A;  3EH4 A;  4GP8 A;  3QJV A;  3WFC B;  1XME A;  3WFE B;  3WG7 A;  3BVD A;  2DYS A;  3ABK A;  1V55 A;  3AG4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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