5B66O

Crystal structure analysis of photosystem ii complex
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
243
structure length
243
Chain Sequence
TLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport, photosynthesis
publication title Two Different Structures of the Oxygen-Evolving Complex in the Same Polypeptide Frameworks of Photosystem II
pubmed doi rcsb
molecule keywords Photosystem II protein D1
total genus 53
structure length 243
sequence length 243
chains with identical sequence o
ec nomenclature
pdb deposition date 2016-05-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
O PF01716 MSP Manganese-stabilising protein / photosystem II polypeptide
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursor 5b66O01
3.30.2050.10 Alpha Beta 2-Layer Sandwich photosynthetic oxygen evolving center fold photosynthetic oxygen evolving center domain 5b66O02
4UB8O 5G39A 3A0BO 4PJ0O 2AXTO 5G38A 5E79O 3WU2O 5GTHO 3A0HO 5B66O 1S5LO 5B5EO 5GTIO 5H2FO 4UB6O 4IL6O 3JCUO 3KZIO 5TISO 5KAFO 5KAIO 5G3AA
chains in the Genus database with same CATH superfamily
3A2SX 1MM5A 2R89A 5DL8A 4UB8O 3G7GA 1QJPA 1HXTA 3JTYA 4O49A 5G39A 5T5FA 2W81C 2F1TA 4FSPA 3TZGA 4C69X 1IZNA 4AYDC 3AAEA 3NSGA 5G38A 2KZ7A 2JQYA 3BRYA 2F1CX 3UAQA 2KC0A 4RJXA 5FVNA 3A0HO 4O4UA 2FGRA 1ZHTA 1MM4A 4N59A 2K4TA 4AYMC 4BUMX 5IYUA 3SZDA 1HXUA 4JFBA 4AYID 4D64A 5ADXL 5DL5A 1MPFA 5B5EO 2MNHA 3GP6A 4O3YA 3SYBA 4AZLA 3AA0B 3DA3A 4AUIA 3VE1A 5H2FO 4UB6O 3EMNX 3HWBA 3JCUO 1BT9A 4XNKA 2XMXA 2X9KA 4RLBA 4FMSA 2ZFGA 3QRAA 5DL6A 2ODJA 3AA7A 5EE2A 4U9CA 1T1LA 2XE1A 2XE3A 1E54A 3AA7B 5AFUK 3PGRA 2M07A 1BXWA 4O4XA 4AKMA 4PJ0O 3LK2A 2WVPA 3PGUA 1PRNA 3UU2A 4XNLA 1Q9GA 2AXTO 3BS0A 3T0SA 4E1SA 3PGSA 3DWOX 5PRNA 4KR8A 4G76A 3LK3A 3FYXA 3LK2B 3VY8X 4GCSA 1GFQA 5GTHO 4PUXA 4C4VB 3LK3B 2M06A 2KXPB 1ZHWA 1QJ9A 4GCPA 2ZLDA 3AA0A 4KR4A 1GFNA 2MHLA 2N2MA 2XTQA 3AA6B 3HW9A 3PQSA 4N74A 5GTIO 4CTDA 3HOLA 3VE2A 2YNKA 4Z3TA 2J4UP 3SYSA 2W80C 3LK42 3PORA 3POUA 3PQUA 3WI5A 3PRNA 4O3WA 2JMMA 3K19A 3DWNA 2OMFA 3DZMA 4FZLA 4GF4A 7PRNA 2YPVA 3VZWX 3PF1A 3O0EA 3AAAB 4LSFA 4E1TA 2K0LA 2R4OA 4FT6A 3SY7A 3A0BO 4C4VA 4FUVA 5ADXK 4AKRB 1OPFA 2KDYA 2X27X 4LSEA 1THQA 4O3ZA 4RLCA 3VY9X 4C00A 3HOEA 5E79O 4G75A 3BRZA 1GFMA 1ZHXA 2KXPA 1QJ8A 2J1NA 4RJWA 3WU2O 1ORMA 1P4TA 2Y2XA 4F4BA 3RBHA 3AA6A 2GE4A 5B66O 2O4VA 1S5LO 1PHOA 2PORA 3C5OA 8PRNA 4LSHA 1ZHYA 3WI4A 5GV0A 5JDPA 1BH3A 2R4NA 5DL7A 3T24A 2N2LA 3VZUX 4AYNA 2F1VA 3KZIO 3LK41 3AA1B 4RL9A 2IWWA 4GCQA 1HXXA 5KAIO 4FRXA 3AAAA 1Q9FA 2XE5A 4AFKA 2R4PA 4N58A 4AYEC 1OSMA 4O3XB 4D65A 3T20A 3NJTA 1YS5A 2R88A 2Y0LA 2LHFA 4AKRA 3UPGA 2XE2A 3V8UA 4GHBA 5G26A 2WJQA 4K3BA 4FZNA 3VZTX 1IZNB 3SZVA 3DA4A 4K3CA 2Y0KA 1H6S1 2Y7SA 3AAEB 4PR7A 4FZMA 2FGQX 2KZ7B 5AFUL 2R4LA 1GFPA 3POXA 4FRTA 4N75A 2XG6A 3KVDD 4QQ1A 2IWVA 3QRCA 4D5UA 1T16A 2PRNA 4FESA 1GFOA 3AA1A 4JCHA 4KRAA 4IL6O 2WJRA 1ZHZA 4B61A 6PRNA 5D5DA 1G90A 3POQA 4FOZA 3SY9A 2R8AA 2XTRA 2QTKA 4FSOA 4FQEA 4LSIA 5KAFO 2Y0HA 5TISO 2LFUA 2ERVA 5G3AA
chains in the Genus database with same CATH topology
4UB8O 5G39A 3A0BO 4PJ0O 2AXTO 5G38A 5E79O 3WU2O 5GTHO 3A0HO 5B66O 1S5LO 5B5EO 5GTIO 5H2FO 4UB6O 4IL6O 3JCUO 3KZIO 5TISO 5KAFO 5KAIO 5G3AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UB8 O;  5G39 A;  3A0B O;  4PJ0 O;  2AXT O;  5G38 A;  5E79 O;  3WU2 O;  5GTH O;  3A0H O;  5B66 O;  1S5L O;  5B5E O;  5GTI O;  5H2F O;  4UB6 O;  4IL6 O;  3JCU O;  3KZI O;  5TIS O;  5KAF O;  5KAI O;  5G3A A; 
#chains in the Genus database with same CATH topology
 3A2S X;  1MM5 A;  2R89 A;  5DL8 A;  4UB8 O;  3G7G A;  1QJP A;  1HXT A;  3JTY A;  4O49 A;  5G39 A;  5T5F A;  2W81 C;  2F1T A;  4FSP A;  3TZG A;  4C69 X;  1IZN A;  4AYD C;  3AAE A;  3NSG A;  5G38 A;  2KZ7 A;  2JQY A;  3BRY A;  2F1C X;  3UAQ A;  2KC0 A;  4RJX A;  5FVN A;  3A0H O;  4O4U A;  2FGR A;  1ZHT A;  1MM4 A;  4N59 A;  2K4T A;  4AYM C;  4BUM X;  5IYU A;  3SZD A;  1HXU A;  4JFB A;  4AYI D;  4D64 A;  5ADX L;  5DL5 A;  1MPF A;  5B5E O;  2MNH A;  3GP6 A;  4O3Y A;  3SYB A;  4AZL A;  3AA0 B;  3DA3 A;  4AUI A;  3VE1 A;  5H2F O;  4UB6 O;  3EMN X;  3HWB A;  3JCU O;  1BT9 A;  4XNK A;  2XMX A;  2X9K A;  4RLB A;  4FMS A;  2ZFG A;  3QRA A;  5DL6 A;  2ODJ A;  3AA7 A;  5EE2 A;  4U9C A;  1T1L A;  2XE1 A;  2XE3 A;  1E54 A;  3AA7 B;  5AFU K;  3PGR A;  2M07 A;  1BXW A;  4O4X A;  4AKM A;  4PJ0 O;  3LK2 A;  2WVP A;  3PGU A;  1PRN A;  3UU2 A;  4XNL A;  1Q9G A;  2AXT O;  3BS0 A;  3T0S A;  4E1S A;  3PGS A;  3DWO X;  5PRN A;  4KR8 A;  4G76 A;  3LK3 A;  3FYX A;  3LK2 B;  3VY8 X;  4GCS A;  1GFQ A;  5GTH O;  4PUX A;  4C4V B;  3LK3 B;  2M06 A;  2KXP B;  1ZHW A;  1QJ9 A;  4GCP A;  2ZLD A;  3AA0 A;  4KR4 A;  1GFN A;  2MHL A;  2N2M A;  2XTQ A;  3AA6 B;  3HW9 A;  3PQS A;  4N74 A;  5GTI O;  4CTD A;  3HOL A;  3VE2 A;  2YNK A;  4Z3T A;  2J4U P;  3SYS A;  2W80 C;  3LK4 2;  3POR A;  3POU A;  3PQU A;  3WI5 A;  3PRN A;  4O3W A;  2JMM A;  3K19 A;  3DWN A;  2OMF A;  3DZM A;  4FZL A;  4GF4 A;  7PRN A;  2YPV A;  3VZW X;  3PF1 A;  3O0E A;  3AAA B;  4LSF A;  4E1T A;  2K0L A;  2R4O A;  4FT6 A;  3SY7 A;  3A0B O;  4C4V A;  4FUV A;  5ADX K;  4AKR B;  1OPF A;  2KDY A;  2X27 X;  4LSE A;  1THQ A;  4O3Z A;  4RLC A;  3VY9 X;  4C00 A;  3HOE A;  5E79 O;  4G75 A;  3BRZ A;  1GFM A;  1ZHX A;  2KXP A;  1QJ8 A;  2J1N A;  4RJW A;  3WU2 O;  1ORM A;  1P4T A;  2Y2X A;  4F4B A;  3RBH A;  3AA6 A;  2GE4 A;  5B66 O;  2O4V A;  1S5L O;  1PHO A;  2POR A;  3C5O A;  8PRN A;  4LSH A;  1ZHY A;  3WI4 A;  5GV0 A;  5JDP A;  1BH3 A;  2R4N A;  5DL7 A;  3T24 A;  2N2L A;  3VZU X;  4AYN A;  2F1V A;  3KZI O;  3LK4 1;  3AA1 B;  4RL9 A;  2IWW A;  4GCQ A;  1HXX A;  5KAI O;  4FRX A;  3AAA A;  1Q9F A;  2XE5 A;  4AFK A;  2R4P A;  4N58 A;  4AYE C;  1OSM A;  4O3X B;  4D65 A;  3T20 A;  3NJT A;  1YS5 A;  2R88 A;  2Y0L A;  2LHF A;  4AKR A;  3UPG A;  2XE2 A;  3V8U A;  4GHB A;  5G26 A;  2WJQ A;  4K3B A;  4FZN A;  3VZT X;  1IZN B;  3SZV A;  3DA4 A;  4K3C A;  2Y0K A;  1H6S 1;  2Y7S A;  3AAE B;  4PR7 A;  4FZM A;  2FGQ X;  2KZ7 B;  5AFU L;  2R4L A;  1GFP A;  3POX A;  4FRT A;  4N75 A;  2XG6 A;  3KVD D;  4QQ1 A;  2IWV A;  3QRC A;  4D5U A;  1T16 A;  2PRN A;  4FES A;  1GFO A;  3AA1 A;  4JCH A;  4KRA A;  4IL6 O;  2WJR A;  1ZHZ A;  4B61 A;  6PRN A;  5D5D A;  1G90 A;  3POQ A;  4FOZ A;  3SY9 A;  2R8A A;  2XTR A;  2QTK A;  4FSO A;  4FQE A;  4LSI A;  5KAF O;  2Y0H A;  5TIS O;  2LFU A;  2ERV A;  5G3A A; 
#chains in the Genus database with same CATH homology
 4UB8 O;  5G39 A;  3A0B O;  4PJ0 O;  2AXT O;  5G38 A;  5E79 O;  3WU2 O;  5GTH O;  3A0H O;  5B66 O;  1S5L O;  5B5E O;  5GTI O;  5H2F O;  4UB6 O;  4IL6 O;  3JCU O;  3KZI O;  5TIS O;  5KAF O;  5KAI O;  5G3A A; 
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similar chains in the pdb database (?% sequence similarity)

 
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