5B66O

Crystal structure analysis of photosystem ii complex
Total Genus 53
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
243
structure length
243
Chain Sequence
TLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Electron transport, photosynthesis
molecule keywords Photosystem II protein D1
publication title Two Different Structures of the Oxygen-Evolving Complex in the Same Polypeptide Frameworks of Photosystem II
pubmed doi rcsb
total genus 53
structure length 243
sequence length 243
chains with identical sequence o
ec nomenclature
pdb deposition date 2016-05-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
O PF01716 MSP Manganese-stabilising protein / photosystem II polypeptide
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursor 5b66O01
3.30.2050.10 Alpha Beta 2-Layer Sandwich photosynthetic oxygen evolving center fold photosynthetic oxygen evolving center domain 5b66O02
5H2FO 5KAFO 2AXTO 3WU2O 4PJ0O 5G38A 4UB8O 5B66O 3JCUO 5B5EO 5E79O 5KAIO 5GTHO 5G3AA 1S5LO 5G39A 5GTIO 3KZIO 5TISO 4UB6O 4IL6O 3A0HO 3A0BO
chains in the Genus database with same CATH superfamily
3VZTX 3AA1A 5GV0A 1HXXA 3PORA 1Q9FA 4C00A 5EE2A 3G7GA 2J4UP 1BXWA 1QJPA 2WVPA 5IYUA 3VZWX 4GCQA 2FGQX 4LSHA 2K4TA 3POUA 4FZNA 4RJXA 4AYNA 3AA0B 3HW9A 3WI5A 4CTDA 3QRAA 3AAAB 1OSMA 4K3CA 4RL9A 1IZNB 1P4TA 2Y0HA 3AA0A 5G38A 4G75A 2MHLA 3AAAA 2ZLDA 4PR7A 3SYSA 3AAEB 3VY9X 4FT6A 4AKMA 5DL5A 3AA7A 2K0LA 3AAEA 1PHOA 4O4UA 5G26A 4E1TA 5T5FA 1GFMA 4F4BA 4FQEA 3DZMA 4O3YA 2PORA 4XNKA 5DL6A 1GFNA 4IL6O 5DL8A 4AFKA 3HOEA 3VE1A 1ZHXA 4LSEA 3UU2A 4AUIA 4LSIA 2IWVA 2ERVA 5KAFO 2OMFA 2XTQA 3PGSA 4JFBA 1T16A 4C4VB 1GFPA 3BS0A 4FZMA 5JDPA 4RJWA 4O49A 4AYMC 2GE4A 2M07A 2KC0A 4O3WA 1ZHYA 2QTKA 2XE5A 4B61A 2MNHA 4PJ0O 4UB8O 2LFUA 5B66O 3KVDD 3PGUA 4BUMX 2PRNA 1PRNA 2X9KA 4KR8A 2JQYA 3DWNA 5ADXL 3VE2A 4AKRA 2J1NA 3DA3A 1IZNA 5KAIO 2R4LA 4KRAA 1ORMA 3JTYA 4PUXA 2R4NA 4FSOA 4XNLA 5G39A 5GTIO 3KZIO 5AFUL 2R89A 2XE3A 4RLBA 5ADXK 1THQA 4QQ1A 1HXTA 2R4OA 5DL7A 3SZDA 8PRNA 2FGRA 1ZHTA 3A0HO 2Y2XA 1QJ9A 2YNKA 4U9CA 4O3XB 4KR4A 1MM4A 5H2FO 4AYDC 2R88A 3PGRA 1BT9A 5AFUK 4GHBA 2KXPB 4Z3TA 2AXTO 4N58A 2YPVA 3VY8X 3T20A 4O4XA 2ODJA 4AYID 2F1CX 2XG6A 1ZHWA 2WJRA 1HXUA 1MPFA 2XTRA 3AA6B 3DA4A 3RBHA 4C4VA 4D64A 3WU2O 1OPFA 4AZLA 2XE1A 3NJTA 1GFOA 2LHFA 2R8AA 3AA6A 4FESA 2JMMA 4FOZA 5E79O 5D5DA 3SZVA 2X27X 3SY9A 4AYEC 4N59A 1E54A 4JCHA 7PRNA 1ZHZA 3POQA 2KZ7B 2N2LA 3QRCA 4N75A 4FRTA 2F1VA 5G3AA 3GP6A 2Y0KA 1S5LO 3DWOX 4AKRB 3LK41 2Y0LA 2KZ7A 3BRYA 3O0EA 6PRNA 2XMXA 4FRXA 1MM5A 1Q9GA 5TISO 3UAQA 4UB6O 5PRNA 1BH3A 4FSPA 1G90A 4E1SA 3LK2B 2W81C 5FVNA 3T24A 2R4PA 4FZLA 2F1TA 2KDYA 4LSFA 3K19A 3LK2A 3LK3B 4D65A 3T0SA 1YS5A 3VZUX 3NSGA 3PF1A 3WI4A 3PQUA 1GFQA 2KXPA 2N2MA 3LK3A 4FMSA 3V8UA 4GF4A 3PRNA 4N74A 3C5OA 4G76A 2ZFGA 1T1LA 3JCUO 4FUVA 4RLCA 3TZGA 4C69X 3BRZA 2M06A 3AA7B 1H6S1 5B5EO 3EMNX 4K3BA 3HOLA 3PQSA 3FYXA 5GTHO 4O3ZA 1QJ8A 2O4VA 3LK42 3A2SX 3SY7A 2Y7SA 3HWBA 2XE2A 3UPGA 3POXA 2WJQA 3AA1B 3SYBA 4D5UA 2IWWA 4GCSA 2W80C 3A0BO 4GCPA
chains in the Genus database with same CATH topology
5H2FO 5KAFO 2AXTO 3WU2O 4PJ0O 5G38A 4UB8O 5B66O 3JCUO 5B5EO 5E79O 5KAIO 5GTHO 5G3AA 1S5LO 5G39A 5GTIO 3KZIO 5TISO 4UB6O 4IL6O 3A0HO 3A0BO
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5H2F O;  5KAF O;  2AXT O;  3WU2 O;  4PJ0 O;  5G38 A;  4UB8 O;  5B66 O;  3JCU O;  5B5E O;  5E79 O;  5KAI O;  5GTH O;  5G3A A;  1S5L O;  5G39 A;  5GTI O;  3KZI O;  5TIS O;  4UB6 O;  4IL6 O;  3A0H O;  3A0B O; 
#chains in the Genus database with same CATH topology
 3VZT X;  3AA1 A;  5GV0 A;  1HXX A;  3POR A;  1Q9F A;  4C00 A;  5EE2 A;  3G7G A;  2J4U P;  1BXW A;  1QJP A;  2WVP A;  5IYU A;  3VZW X;  4GCQ A;  2FGQ X;  4LSH A;  2K4T A;  3POU A;  4FZN A;  4RJX A;  4AYN A;  3AA0 B;  3HW9 A;  3WI5 A;  4CTD A;  3QRA A;  3AAA B;  1OSM A;  4K3C A;  4RL9 A;  1IZN B;  1P4T A;  2Y0H A;  3AA0 A;  5G38 A;  4G75 A;  2MHL A;  3AAA A;  2ZLD A;  4PR7 A;  3SYS A;  3AAE B;  3VY9 X;  4FT6 A;  4AKM A;  5DL5 A;  3AA7 A;  2K0L A;  3AAE A;  1PHO A;  4O4U A;  5G26 A;  4E1T A;  5T5F A;  1GFM A;  4F4B A;  4FQE A;  3DZM A;  4O3Y A;  2POR A;  4XNK A;  5DL6 A;  1GFN A;  4IL6 O;  5DL8 A;  4AFK A;  3HOE A;  3VE1 A;  1ZHX A;  4LSE A;  3UU2 A;  4AUI A;  4LSI A;  2IWV A;  2ERV A;  5KAF O;  2OMF A;  2XTQ A;  3PGS A;  4JFB A;  1T16 A;  4C4V B;  1GFP A;  3BS0 A;  4FZM A;  5JDP A;  4RJW A;  4O49 A;  4AYM C;  2GE4 A;  2M07 A;  2KC0 A;  4O3W A;  1ZHY A;  2QTK A;  2XE5 A;  4B61 A;  2MNH A;  4PJ0 O;  4UB8 O;  2LFU A;  5B66 O;  3KVD D;  3PGU A;  4BUM X;  2PRN A;  1PRN A;  2X9K A;  4KR8 A;  2JQY A;  3DWN A;  5ADX L;  3VE2 A;  4AKR A;  2J1N A;  3DA3 A;  1IZN A;  5KAI O;  2R4L A;  4KRA A;  1ORM A;  3JTY A;  4PUX A;  2R4N A;  4FSO A;  4XNL A;  5G39 A;  5GTI O;  3KZI O;  5AFU L;  2R89 A;  2XE3 A;  4RLB A;  5ADX K;  1THQ A;  4QQ1 A;  1HXT A;  2R4O A;  5DL7 A;  3SZD A;  8PRN A;  2FGR A;  1ZHT A;  3A0H O;  2Y2X A;  1QJ9 A;  2YNK A;  4U9C A;  4O3X B;  4KR4 A;  1MM4 A;  5H2F O;  4AYD C;  2R88 A;  3PGR A;  1BT9 A;  5AFU K;  4GHB A;  2KXP B;  4Z3T A;  2AXT O;  4N58 A;  2YPV A;  3VY8 X;  3T20 A;  4O4X A;  2ODJ A;  4AYI D;  2F1C X;  2XG6 A;  1ZHW A;  2WJR A;  1HXU A;  1MPF A;  2XTR A;  3AA6 B;  3DA4 A;  3RBH A;  4C4V A;  4D64 A;  3WU2 O;  1OPF A;  4AZL A;  2XE1 A;  3NJT A;  1GFO A;  2LHF A;  2R8A A;  3AA6 A;  4FES A;  2JMM A;  4FOZ A;  5E79 O;  5D5D A;  3SZV A;  2X27 X;  3SY9 A;  4AYE C;  4N59 A;  1E54 A;  4JCH A;  7PRN A;  1ZHZ A;  3POQ A;  2KZ7 B;  2N2L A;  3QRC A;  4N75 A;  4FRT A;  2F1V A;  5G3A A;  3GP6 A;  2Y0K A;  1S5L O;  3DWO X;  4AKR B;  3LK4 1;  2Y0L A;  2KZ7 A;  3BRY A;  3O0E A;  6PRN A;  2XMX A;  4FRX A;  1MM5 A;  1Q9G A;  5TIS O;  3UAQ A;  4UB6 O;  5PRN A;  1BH3 A;  4FSP A;  1G90 A;  4E1S A;  3LK2 B;  2W81 C;  5FVN A;  3T24 A;  2R4P A;  4FZL A;  2F1T A;  2KDY A;  4LSF A;  3K19 A;  3LK2 A;  3LK3 B;  4D65 A;  3T0S A;  1YS5 A;  3VZU X;  3NSG A;  3PF1 A;  3WI4 A;  3PQU A;  1GFQ A;  2KXP A;  2N2M A;  3LK3 A;  4FMS A;  3V8U A;  4GF4 A;  3PRN A;  4N74 A;  3C5O A;  4G76 A;  2ZFG A;  1T1L A;  3JCU O;  4FUV A;  4RLC A;  3TZG A;  4C69 X;  3BRZ A;  2M06 A;  3AA7 B;  1H6S 1;  5B5E O;  3EMN X;  4K3B A;  3HOL A;  3PQS A;  3FYX A;  5GTH O;  4O3Z A;  1QJ8 A;  2O4V A;  3LK4 2;  3A2S X;  3SY7 A;  2Y7S A;  3HWB A;  2XE2 A;  3UPG A;  3POX A;  2WJQ A;  3AA1 B;  3SYB A;  4D5U A;  2IWW A;  4GCS A;  2W80 C;  3A0B O;  4GCP A; 
#chains in the Genus database with same CATH homology
 5H2F O;  5KAF O;  2AXT O;  3WU2 O;  4PJ0 O;  5G38 A;  4UB8 O;  5B66 O;  3JCU O;  5B5E O;  5E79 O;  5KAI O;  5GTH O;  5G3A A;  1S5L O;  5G39 A;  5GTI O;  3KZI O;  5TIS O;  4UB6 O;  4IL6 O;  3A0H O;  3A0B O; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...