5BMPA

Crystal structure of phosphoglucomutase from xanthomonas citri complexed with glucose-1-phosphate
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
449
structure length
448
Chain Sequence
HMTLPAFKAYDIRGRVPDELNEDLARRIGVALAAQLDQGPVVLGHDVRLASPALQEALSAGLRASGRDVIDIGLCGTEEVYFQTDYLKAAGGVMVTAHNPMDYNGMKLVREQARPISSDTGLFAIRDTVAADTAAPGEPTASEQSRTDKTAYLEHLLSYVDRSTLKPLKLVVNAGNGGAGLIVDLLAPHLPFEFVRVFHEPDGNFPNGIPNPLLPENRDATAKAVKDNGADFGIAWDGDFDRCFFFDHTGRFIEGYYLVGLLAQAILAKQPGGKVVHDPRLTWNTVEQVEEAGGIPVLCKSGHAFIKEKMRSENAVYGGEMSAHHYFREFAYADSGMIPWLLIAELVSQSGRSLADLVEARMQKFPCSGEINFKVADAKASVARVMEHYASLSPELDYTDGISADFGQWRFNLRSSNTEPLLRLNVETRGDAALLETRTQEISNLLRG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Phosphoglucomutase
publication title Structural and functional characterization of the phosphoglucomutase from Xanthomonas citri subsp. citri.
pubmed doi rcsb
source organism Xanthomonas axonopodis pv. citri (strain 306)
molecule tags Isomerase
total genus 161
structure length 448
sequence length 449
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2015-05-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 5bmpA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 5bmpA03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 5bmpA01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 5bmpA02
1WJWA 1JDYA 5BMNA 5JMVD 2H4LX 1C47A 2FKFA 4WX8A 4BJUA 5HSHA 3PMGA 4WXAA 3ENOC 3I3WA 1K35A 2EIUA 1KFIA 2H5AX 2JPIA 2DKDA 1KFQA 1PCJX 2Z0FA 1TUOA 3UW2A 4IL8A 5KL0A 2F7LA 1P5DX 1C4GA 4MRQA 2EHPA 5F9CA 2FKMX 3NA5A 5BMPA 1PCMX 1K2YX 5EPCA 2FUVA 5JN5A 2DKCA 1LXTA 3BKQX 1WQAA 3RSMA 3ENCA 3C04A 4QG5A 2DKAA 1P5GX 4HJHA 1VKLA 3PDKA 3OLPA
chains in the Genus database with same CATH superfamily
2MJ7A 1VTLE 3RPJA 2D0CA 1VOKA 3OH9A 1KYDA 1C47A 2JHNA 3OCIA 3ASMA 4EALA 3CW7A 5HSHA 2NWVA 1N39A 1LWWA 2VJ0A 3ENOC 2HL9A 1PZDA 2H5AX 2R5XA 2ZFDB 2YH5A 3D7QA 4EAKA 1YQRA 1TUOA 3UW2A 5IYDP 2EHPA 1P5DX 4MRQA 2JHJA 5F9CA 1TBPA 2Y8QA 1T6AA 1PCMX 3SNSA 3OC3C 2FUVA 3DPUA 1CDWA 1KYFA 1LXTA 1M5Q1 1WQAA 1NGMA 3RSMA 3T4NA 3OGDA 1QN4A 1QN6A 1KO9A 1RM1A 3F0ZA 4BJUA 3CWTA 1WJWA 1JDYA 5BMNA 1LWVA 2V9JA 1QN3A 2Y8LA 1JFIC 4Q11A 1YTBA 1N3AA 2HL8A 2QLVA 1V5SA 1PCZA 1PVSA 3PMGA 4WXAA 1KY7A 1EUVA 2YA3A 3CWUA 1K35A 1MP9A 1QTPA 2QREA 2LAEA 3N89A 1YQKA 2IV9A 4CFFA 1YQLA 1QN9A 2JPIA 3I0XA 1KYUA 1PCJX 2QRCA 4WZSD 4IL8A 2F7LA 2NOHA 2D0BA 3EIKA 3HS9A 3NA5A 1MPGA 1XSZA 1K2YX 2QRDA 2NLVA 1KY6A 4RODB 4DULA 2PWWA 2DKCA 1HU0A 4QG5A 1UL7A 2DKAA 2HKPA 4B0AA 2D0AA 3KTUA 1J3MA 1R4XA 3VN5A 2V92A 3HS8A 1UT4A 3H1ZA 2QR1A 2I5WA 4EAJA 2XHIA 4ROCB 1FN7A 3OSMA 4C7PA 1QNCA 2NVMA 1M3QA 2NOIA 2V8QA 1QN5A 1NH2A 3OSTA 1Q9UA 2EIUA 1QNAA 3OSEA 1YTFA 2OOXA 2NOEA 2O3OA 1C9BB 5AN4A 1KFQA 4D7QA 2Z0FA 1QN7A 1QN8A 2Z8UA 4D7RA 4EAGA 1QNBA 2NOZA 1N3CA 2HZMA 3I0WA 1B9KA 3F10A 3IH7A 1W80A 5JN5A 3BKQX 4EJZA 2OOYA 3C04A 1AISA 1M3HA 3KRMA 3TDHA 2NOFA 3PDKA 1E42A 3OLPA 2NOLA 3ULXA 3CWSA 1EBMA 5JMVD 1TGHA 2H4LX 5IYBP 2FKFA 4WX8A 1UT7A 5IYCP 1DIZA 2NOBA 4EJYA 1VTOA 3I3WA 3EAYA 3CVTA 1KFIA 3D4VA 2DKDA 3DPTA 4ROEB 1NVPA 1QTSA 3TE5A 2HZSA 5KL0A 1C4GA 2G30A 2JOIA 1LWYA 2FKMX 1D3UA 4EAIA 5BMPA 2MZ8A 3OH6A 4I8OA 4PY5A 5EPCA 1YQMA 3CWAA 2EHBD 2IV8A 2FGTA 4TPSA 1QNEA 1TBAB 3ENCA 1P5GX 4HJHA 1VKLA 3CVSA 1VOLB
chains in the Genus database with same CATH topology
1WJWA 1JDYA 5BMNA 5JMVD 2H4LX 1C47A 2FKFA 4WX8A 4BJUA 5HSHA 3PMGA 4WXAA 3ENOC 3I3WA 1K35A 2EIUA 1KFIA 2H5AX 2JPIA 2DKDA 1KFQA 1PCJX 2Z0FA 1TUOA 3UW2A 4IL8A 5KL0A 2F7LA 1P5DX 1C4GA 4MRQA 2EHPA 5F9CA 2FKMX 3NA5A 5BMPA 1PCMX 1K2YX 5EPCA 2FUVA 5JN5A 2DKCA 1LXTA 3BKQX 1WQAA 3RSMA 3ENCA 3C04A 4QG5A 2DKAA 1P5GX 4HJHA 1VKLA 3PDKA 3OLPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WJW A;  1JDY A;  5BMN A;  5JMV D;  2H4L X;  1C47 A;  2FKF A;  4WX8 A;  4BJU A;  5HSH A;  3PMG A;  4WXA A;  3ENO C;  3I3W A;  1K35 A;  2EIU A;  1KFI A;  2H5A X;  2JPI A;  2DKD A;  1KFQ A;  1PCJ X;  2Z0F A;  1TUO A;  3UW2 A;  4IL8 A;  5KL0 A;  2F7L A;  1P5D X;  1C4G A;  4MRQ A;  2EHP A;  5F9C A;  2FKM X;  3NA5 A;  5BMP A;  1PCM X;  1K2Y X;  5EPC A;  2FUV A;  5JN5 A;  2DKC A;  1LXT A;  3BKQ X;  1WQA A;  3RSM A;  3ENC A;  3C04 A;  4QG5 A;  2DKA A;  1P5G X;  4HJH A;  1VKL A;  3PDK A;  3OLP A; 
#chains in the Genus database with same CATH topology
 2MJ7 A;  1VTL E;  3RPJ A;  2D0C A;  1VOK A;  3OH9 A;  1KYD A;  1C47 A;  2JHN A;  3OCI A;  3ASM A;  4EAL A;  3CW7 A;  5HSH A;  2NWV A;  1N39 A;  1LWW A;  2VJ0 A;  3ENO C;  2HL9 A;  1PZD A;  2H5A X;  2R5X A;  2ZFD B;  2YH5 A;  3D7Q A;  4EAK A;  1YQR A;  1TUO A;  3UW2 A;  5IYD P;  2EHP A;  1P5D X;  4MRQ A;  2JHJ A;  5F9C A;  1TBP A;  2Y8Q A;  1T6A A;  1PCM X;  3SNS A;  3OC3 C;  2FUV A;  3DPU A;  1CDW A;  1KYF A;  1LXT A;  1M5Q 1;  1WQA A;  1NGM A;  3RSM A;  3T4N A;  3OGD A;  1QN4 A;  1QN6 A;  1KO9 A;  1RM1 A;  3F0Z A;  4BJU A;  3CWT A;  1WJW A;  1JDY A;  5BMN A;  1LWV A;  2V9J A;  1QN3 A;  2Y8L A;  1JFI C;  4Q11 A;  1YTB A;  1N3A A;  2HL8 A;  2QLV A;  1V5S A;  1PCZ A;  1PVS A;  3PMG A;  4WXA A;  1KY7 A;  1EUV A;  2YA3 A;  3CWU A;  1K35 A;  1MP9 A;  1QTP A;  2QRE A;  2LAE A;  3N89 A;  1YQK A;  2IV9 A;  4CFF A;  1YQL A;  1QN9 A;  2JPI A;  3I0X A;  1KYU A;  1PCJ X;  2QRC A;  4WZS D;  4IL8 A;  2F7L A;  2NOH A;  2D0B A;  3EIK A;  3HS9 A;  3NA5 A;  1MPG A;  1XSZ A;  1K2Y X;  2QRD A;  2NLV A;  1KY6 A;  4ROD B;  4DUL A;  2PWW A;  2DKC A;  1HU0 A;  4QG5 A;  1UL7 A;  2DKA A;  2HKP A;  4B0A A;  2D0A A;  3KTU A;  1J3M A;  1R4X A;  3VN5 A;  2V92 A;  3HS8 A;  1UT4 A;  3H1Z A;  2QR1 A;  2I5W A;  4EAJ A;  2XHI A;  4ROC B;  1FN7 A;  3OSM A;  4C7P A;  1QNC A;  2NVM A;  1M3Q A;  2NOI A;  2V8Q A;  1QN5 A;  1NH2 A;  3OST A;  1Q9U A;  2EIU A;  1QNA A;  3OSE A;  1YTF A;  2OOX A;  2NOE A;  2O3O A;  1C9B B;  5AN4 A;  1KFQ A;  4D7Q A;  2Z0F A;  1QN7 A;  1QN8 A;  2Z8U A;  4D7R A;  4EAG A;  1QNB A;  2NOZ A;  1N3C A;  2HZM A;  3I0W A;  1B9K A;  3F10 A;  3IH7 A;  1W80 A;  5JN5 A;  3BKQ X;  4EJZ A;  2OOY A;  3C04 A;  1AIS A;  1M3H A;  3KRM A;  3TDH A;  2NOF A;  3PDK A;  1E42 A;  3OLP A;  2NOL A;  3ULX A;  3CWS A;  1EBM A;  5JMV D;  1TGH A;  2H4L X;  5IYB P;  2FKF A;  4WX8 A;  1UT7 A;  5IYC P;  1DIZ A;  2NOB A;  4EJY A;  1VTO A;  3I3W A;  3EAY A;  3CVT A;  1KFI A;  3D4V A;  2DKD A;  3DPT A;  4ROE B;  1NVP A;  1QTS A;  3TE5 A;  2HZS A;  5KL0 A;  1C4G A;  2G30 A;  2JOI A;  1LWY A;  2FKM X;  1D3U A;  4EAI A;  5BMP A;  2MZ8 A;  3OH6 A;  4I8O A;  4PY5 A;  5EPC A;  1YQM A;  3CWA A;  2EHB D;  2IV8 A;  2FGT A;  4TPS A;  1QNE A;  1TBA B;  3ENC A;  1P5G X;  4HJH A;  1VKL A;  3CVS A;  1VOL B; 
#chains in the Genus database with same CATH homology
 1WJW A;  1JDY A;  5BMN A;  5JMV D;  2H4L X;  1C47 A;  2FKF A;  4WX8 A;  4BJU A;  5HSH A;  3PMG A;  4WXA A;  3ENO C;  3I3W A;  1K35 A;  2EIU A;  1KFI A;  2H5A X;  2JPI A;  2DKD A;  1KFQ A;  1PCJ X;  2Z0F A;  1TUO A;  3UW2 A;  4IL8 A;  5KL0 A;  2F7L A;  1P5D X;  1C4G A;  4MRQ A;  2EHP A;  5F9C A;  2FKM X;  3NA5 A;  5BMP A;  1PCM X;  1K2Y X;  5EPC A;  2FUV A;  5JN5 A;  2DKC A;  1LXT A;  3BKQ X;  1WQA A;  3RSM A;  3ENC A;  3C04 A;  4QG5 A;  2DKA A;  1P5G X;  4HJH A;  1VKL A;  3PDK A;  3OLP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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