5BMPA

Crystal structure of phosphoglucomutase from xanthomonas citri complexed with glucose-1-phosphate
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
449
structure length
448
Chain Sequence
HMTLPAFKAYDIRGRVPDELNEDLARRIGVALAAQLDQGPVVLGHDVRLASPALQEALSAGLRASGRDVIDIGLCGTEEVYFQTDYLKAAGGVMVTAHNPMDYNGMKLVREQARPISSDTGLFAIRDTVAADTAAPGEPTASEQSRTDKTAYLEHLLSYVDRSTLKPLKLVVNAGNGGAGLIVDLLAPHLPFEFVRVFHEPDGNFPNGIPNPLLPENRDATAKAVKDNGADFGIAWDGDFDRCFFFDHTGRFIEGYYLVGLLAQAILAKQPGGKVVHDPRLTWNTVEQVEEAGGIPVLCKSGHAFIKEKMRSENAVYGGEMSAHHYFREFAYADSGMIPWLLIAELVSQSGRSLADLVEARMQKFPCSGEINFKVADAKASVARVMEHYASLSPELDYTDGISADFGQWRFNLRSSNTEPLLRLNVETRGDAALLETRTQEISNLLRG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Phosphoglucomutase
publication title Structural and functional characterization of the phosphoglucomutase from Xanthomonas citri subsp. citri.
pubmed doi rcsb
source organism Xanthomonas axonopodis pv. citri (strain 306)
molecule tags Isomerase
total genus 161
structure length 448
sequence length 449
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2015-05-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 5bmpA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 5bmpA03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 5bmpA01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 5bmpA02
3NA5A 3OLPA 3UW2A 1VKLA 1C4GA 4MRQA 5KL0A 1WQAA 3PDKA 4WX8A 5JN5A 5F9CA 5BMNA 1KFQA 4QG5A 2F7LA 4IL8A 3BKQX 2DKAA 1KFIA 1JDYA 2FUVA 2Z0FA 1LXTA 2EIUA 5HSHA 1PCJX 2H4LX 3PMGA 3ENOC 2H5AX 3ENCA 1K2YX 4HJHA 5EPCA 1TUOA 4BJUA 3RSMA 1WJWA 5BMPA 2JPIA 1C47A 3I3WA 2FKMX 5JMVD 2FKFA 1K35A 1PCMX 4WXAA 1P5DX 3C04A 1P5GX 2EHPA 2DKDA 2DKCA
chains in the Genus database with same CATH superfamily
3DPTA 1VKLA 3CWAA 1VTLE 3N89A 1WQAA 3PDKA 3I0WA 1R4XA 1XSZA 3D4VA 3OC3C 2Y8LA 3IH7A 4IL8A 1TBAB 2YA3A 1KYFA 2HL8A 4EJZA 4EAIA 1KFIA 3OSEA 2JOIA 1JDYA 3TE5A 2D0AA 1YQRA 1NVPA 1PCJX 3PMGA 1YTFA 2H5AX 4PY5A 2NOLA 1MP9A 1M3QA 1YQMA 3TDHA 1QN9A 5AN4A 4BJUA 2R5XA 2V9JA 1QNCA 1YTBA 3I3WA 1QTPA 1K35A 1PCMX 1P5DX 1Q9UA 3OSMA 4RODB 4WZSD 3CWSA 2IV8A 2DKCA 2EHPA 4C7PA 3EAYA 2FGTA 3NA5A 2QLVA 3UW2A 1B9KA 1C4GA 1MPGA 4MRQA 3SNSA 5IYCP 1QN3A 1QNEA 1N3AA 1M3HA 5IYDP 1YQKA 1TGHA 3F10A 2NVMA 1JFIC 1KO9A 4I8OA 1HU0A 1QN4A 2D0BA 3CWTA 1KY7A 4B0AA 2I5WA 3H1ZA 2NOEA 1NH2A 2HZSA 1QN6A 2QREA 4HJHA 5IYBP 2OOYA 1C47A 3F0ZA 2FKMX 2OOXA 3T4NA 5JMVD 2QR1A 4WXAA 2JHNA 4EJYA 3C04A 1P5GX 5BMNA 1LWYA 2G30A 3KTUA 1VOKA 2V92A 1NGMA 1PZDA 2NOIA 1QTSA 1DIZA 5KL0A 4WX8A 1UT4A 5F9CA 1N39A 1LWVA 1KFQA 3D7QA 2QRCA 2F7LA 1T6AA 2Z8UA 3BKQX 1N3CA 3CW7A 2DKAA 1EBMA 1QN8A 1KYDA 3OCIA 3OGDA 1LXTA 1UT7A 3ENOC 3KRMA 1AISA 4ROCB 2HKPA 1QNBA 1YQLA 1QN5A 3HS9A 2MZ8A 2V8QA 3OH9A 3RSMA 5BMPA 1J3MA 2QRDA 2JPIA 2NOFA 3OSTA 4D7RA 4EAKA 2FKFA 1LWWA 1TBPA 4D7QA 1VTOA 3DPUA 1M5Q1 3EIKA 1UL7A 2IV9A 2VJ0A 3OLPA 1VOLB 2NOHA 2JHJA 2NWVA 2O3OA 2ZFDB 1RM1A 2HZMA 5JN5A 2YH5A 4QG5A 2MJ7A 3CVTA 1KYUA 1CDWA 3ASMA 2NOZA 2EHBD 2FUVA 2Z0FA 1W80A 4Q11A 4EAJA 2EIUA 5HSHA 2H4LX 1EUVA 1FN7A 2NLVA 1E42A 3ENCA 4EALA 2HL9A 3RPJA 3CVSA 2XHIA 1K2YX 2PWWA 2Y8QA 5EPCA 1PVSA 1TUOA 4TPSA 1V5SA 3OH6A 3I0XA 1D3UA 1WJWA 3CWUA 3ULXA 1QNAA 4ROEB 3VN5A 3HS8A 1QN7A 2NOBA 1C9BB 4CFFA 1PCZA 2LAEA 4DULA 2D0CA 2DKDA 4EAGA 1KY6A
chains in the Genus database with same CATH topology
3NA5A 3OLPA 3UW2A 1VKLA 1C4GA 4MRQA 5KL0A 1WQAA 3PDKA 4WX8A 5JN5A 5F9CA 5BMNA 1KFQA 4QG5A 2F7LA 4IL8A 3BKQX 2DKAA 1KFIA 1JDYA 2FUVA 2Z0FA 1LXTA 2EIUA 5HSHA 1PCJX 2H4LX 3PMGA 3ENOC 2H5AX 3ENCA 1K2YX 4HJHA 5EPCA 1TUOA 4BJUA 3RSMA 1WJWA 5BMPA 2JPIA 1C47A 3I3WA 2FKMX 5JMVD 2FKFA 1K35A 1PCMX 4WXAA 1P5DX 3C04A 1P5GX 2EHPA 2DKDA 2DKCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NA5 A;  3OLP A;  3UW2 A;  1VKL A;  1C4G A;  4MRQ A;  5KL0 A;  1WQA A;  3PDK A;  4WX8 A;  5JN5 A;  5F9C A;  5BMN A;  1KFQ A;  4QG5 A;  2F7L A;  4IL8 A;  3BKQ X;  2DKA A;  1KFI A;  1JDY A;  2FUV A;  2Z0F A;  1LXT A;  2EIU A;  5HSH A;  1PCJ X;  2H4L X;  3PMG A;  3ENO C;  2H5A X;  3ENC A;  1K2Y X;  4HJH A;  5EPC A;  1TUO A;  4BJU A;  3RSM A;  1WJW A;  5BMP A;  2JPI A;  1C47 A;  3I3W A;  2FKM X;  5JMV D;  2FKF A;  1K35 A;  1PCM X;  4WXA A;  1P5D X;  3C04 A;  1P5G X;  2EHP A;  2DKD A;  2DKC A; 
#chains in the Genus database with same CATH topology
 3DPT A;  1VKL A;  3CWA A;  1VTL E;  3N89 A;  1WQA A;  3PDK A;  3I0W A;  1R4X A;  1XSZ A;  3D4V A;  3OC3 C;  2Y8L A;  3IH7 A;  4IL8 A;  1TBA B;  2YA3 A;  1KYF A;  2HL8 A;  4EJZ A;  4EAI A;  1KFI A;  3OSE A;  2JOI A;  1JDY A;  3TE5 A;  2D0A A;  1YQR A;  1NVP A;  1PCJ X;  3PMG A;  1YTF A;  2H5A X;  4PY5 A;  2NOL A;  1MP9 A;  1M3Q A;  1YQM A;  3TDH A;  1QN9 A;  5AN4 A;  4BJU A;  2R5X A;  2V9J A;  1QNC A;  1YTB A;  3I3W A;  1QTP A;  1K35 A;  1PCM X;  1P5D X;  1Q9U A;  3OSM A;  4ROD B;  4WZS D;  3CWS A;  2IV8 A;  2DKC A;  2EHP A;  4C7P A;  3EAY A;  2FGT A;  3NA5 A;  2QLV A;  3UW2 A;  1B9K A;  1C4G A;  1MPG A;  4MRQ A;  3SNS A;  5IYC P;  1QN3 A;  1QNE A;  1N3A A;  1M3H A;  5IYD P;  1YQK A;  1TGH A;  3F10 A;  2NVM A;  1JFI C;  1KO9 A;  4I8O A;  1HU0 A;  1QN4 A;  2D0B A;  3CWT A;  1KY7 A;  4B0A A;  2I5W A;  3H1Z A;  2NOE A;  1NH2 A;  2HZS A;  1QN6 A;  2QRE A;  4HJH A;  5IYB P;  2OOY A;  1C47 A;  3F0Z A;  2FKM X;  2OOX A;  3T4N A;  5JMV D;  2QR1 A;  4WXA A;  2JHN A;  4EJY A;  3C04 A;  1P5G X;  5BMN A;  1LWY A;  2G30 A;  3KTU A;  1VOK A;  2V92 A;  1NGM A;  1PZD A;  2NOI A;  1QTS A;  1DIZ A;  5KL0 A;  4WX8 A;  1UT4 A;  5F9C A;  1N39 A;  1LWV A;  1KFQ A;  3D7Q A;  2QRC A;  2F7L A;  1T6A A;  2Z8U A;  3BKQ X;  1N3C A;  3CW7 A;  2DKA A;  1EBM A;  1QN8 A;  1KYD A;  3OCI A;  3OGD A;  1LXT A;  1UT7 A;  3ENO C;  3KRM A;  1AIS A;  4ROC B;  2HKP A;  1QNB A;  1YQL A;  1QN5 A;  3HS9 A;  2MZ8 A;  2V8Q A;  3OH9 A;  3RSM A;  5BMP A;  1J3M A;  2QRD A;  2JPI A;  2NOF A;  3OST A;  4D7R A;  4EAK A;  2FKF A;  1LWW A;  1TBP A;  4D7Q A;  1VTO A;  3DPU A;  1M5Q 1;  3EIK A;  1UL7 A;  2IV9 A;  2VJ0 A;  3OLP A;  1VOL B;  2NOH A;  2JHJ A;  2NWV A;  2O3O A;  2ZFD B;  1RM1 A;  2HZM A;  5JN5 A;  2YH5 A;  4QG5 A;  2MJ7 A;  3CVT A;  1KYU A;  1CDW A;  3ASM A;  2NOZ A;  2EHB D;  2FUV A;  2Z0F A;  1W80 A;  4Q11 A;  4EAJ A;  2EIU A;  5HSH A;  2H4L X;  1EUV A;  1FN7 A;  2NLV A;  1E42 A;  3ENC A;  4EAL A;  2HL9 A;  3RPJ A;  3CVS A;  2XHI A;  1K2Y X;  2PWW A;  2Y8Q A;  5EPC A;  1PVS A;  1TUO A;  4TPS A;  1V5S A;  3OH6 A;  3I0X A;  1D3U A;  1WJW A;  3CWU A;  3ULX A;  1QNA A;  4ROE B;  3VN5 A;  3HS8 A;  1QN7 A;  2NOB A;  1C9B B;  4CFF A;  1PCZ A;  2LAE A;  4DUL A;  2D0C A;  2DKD A;  4EAG A;  1KY6 A; 
#chains in the Genus database with same CATH homology
 3NA5 A;  3OLP A;  3UW2 A;  1VKL A;  1C4G A;  4MRQ A;  5KL0 A;  1WQA A;  3PDK A;  4WX8 A;  5JN5 A;  5F9C A;  5BMN A;  1KFQ A;  4QG5 A;  2F7L A;  4IL8 A;  3BKQ X;  2DKA A;  1KFI A;  1JDY A;  2FUV A;  2Z0F A;  1LXT A;  2EIU A;  5HSH A;  1PCJ X;  2H4L X;  3PMG A;  3ENO C;  2H5A X;  3ENC A;  1K2Y X;  4HJH A;  5EPC A;  1TUO A;  4BJU A;  3RSM A;  1WJW A;  5BMP A;  2JPI A;  1C47 A;  3I3W A;  2FKM X;  5JMV D;  2FKF A;  1K35 A;  1PCM X;  4WXA A;  1P5D X;  3C04 A;  1P5G X;  2EHP A;  2DKD A;  2DKC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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