5BPKA

Varying binding modes of inhibitors and structural differences in the binding pockets of different gamma-glutamyltranspeptidases
Total Genus 107
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
107
sequence length
348
structure length
348
Chain Sequence
ASYPPIKNTKVGLALSSHPLASEIGQKVLEEGGNAIDAAVAIGFALAVVHPAAGNIGGGGFAVIHLANGENVALDFREKAPLKATKNMFLDKQGNVVPKLSEDGYLAAGVPGTVAGMEAMLKKYGTKKLSQLIDPAIKLAENGYAISQRQAETLKEARERFLKYSSSKKYFFKKGHLDYQEGDLFVQKDLAKTLNQIKTLGAKGFYQGQVAELIEKDMKKNGGIITKEDLASYNVKWRKPVVGSYRGYKIISMSPPSSGGTHLIQILNVMENADLSALGYGASKNIHIAAEAMRQAYADRSVYMGDADFVSVPVDKLINKAYAKKIFDTIQPDTVTPSSQIKPGMGQL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Gamma-glutamyltranspeptidase (Ggt)
publication title Varying binding modes of inhibitors and structural differences in the binding pockets of different gamma-glutamyltranspeptidases
rcsb
source organism Helicobacter pylori 26695
total genus 107
structure length 348
sequence length 348
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-05-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.130 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 5bpkA02
4OTTA 2DBWA 4ZBKA 2Z8JA 2QM6A 4ZC6A 2E0YA 3WHSA 3WHQA 3WHRA 4GG2A 4GDXA 4ZCGA 2QMCA 3A75A 5B5TA 2NQOA 2DBXA 2DBUA 2Z8IA 5BPKA 2Z8KA 3FNMA 4Z9OA 4OTUA 2DG5A 2E0XA 2V36A
chains in the Genus database with same CATH superfamily
1KDXA 1H5WA 3H3AA 1HK4A 4JK4A 5FUOA 2Z8JA 2VUEA 2OZBB 3FWCC 4EMXA 2BXDA 4FJCB 4Z69A 5IFOA 2BXPA 1SB0A 4GG2A 4OT2A 4OR0A 1E7HA 1MIYA 2BXGA 4LUHA 4F5UA 5ID9A 5GIOA 3LU6A 5GINA 2XSIA 2DYOA 2XW1A 1MA9A 3NVIA 4IW2A 1GNIA 4F5VA 3KJLA 4C31B 3SIVB 5GIPA 2AJEA 3NVKA 2BXCA 2Z8IA 4G03A 1HK1A 2QHBA 4ZBQA 3V03A 5IIXA 1J78A 1E7CA 2Z8KA 2GUTA 4GDLB 1BKEA 1HK3A 2NNWA 4LB9A 4DM0A 2BXMA 2DG5A 2E0XA 1MM8A 5DQFA 4ZUXV 5IJEA 3NVMA 4K2CA 2LXTA 1IJGA 3KIKA 1HA2A 2DBWA 2KBZA 2XMOA 3W1SA 4GDKB 4J2VA 1JNBA 3CX9A 2XW0A 4S1YA 3V08A 2E0YA 2BXNA 4TQ0A 5IIUA 3WHRA 4FK5B 3VQIA 2BXAA 5GHKA 2KWFA 2CKXA 4GDXA 2BXBA 4TQ1A 4LB2A 5B5TA 2BXEA 1LNSA 3B9LA 2BXKA 1E7GA 1E7FA 2VUFA 5IJ5A 1UORA 1FOUA 2BXOA 1VZSA 3TDLA 1BJ5A 4E99A 5DBYA 4K71A 3MHSB 2AGHB 1KXPD 4Z9OA 4D7XA 2ROHA 4F5TA 1H9ZA 2V36A 4WA6B 4M70B 3BPJA 5ID7A 4N0UD 2XVWA 4HGMB 3SQJA 1KW2A 3LU7A 2QM6A 2BXIA 5HOZA 3PLAA 2YDFA 4F5SA 2BXHA 1MIVA 2EFDA 3WHSA 1O9XA 4HGKA 3M99C 1N5UA 4G04A 1J7EA 4G01A 1VFIA 3ECPA 2LXSA 1E7AA 2I30A 4DHXB 3H37A 4LUFA 4ZCGA 1E7IA 2OT3A 3A75A 1LOTA 3MHHB 2NQOA 2BX8A 5IIHA 5IJFA 3UIVA 3NMUA 1MUHA 2LQHA 3A73A 3G9KD 2DBXA 4BY9C 4N3ZA 5BPKA 3JQZA 4N0FD 4L9KA 3GA9L 2DYMA 4BKEA 1TXUA 3LU8A 3B9MA 2XVQA 3JRYA 1E78A 4L9QA 4OTTA 1E7BA 2LQIA 4ZBKA 2XVUA 2EFHA 3GQXA 4W4UB 2VDBA 3ICXA 4IW1A 4ZC6A 1AO6A 1HK2A 4LA0A 3GQUA 3WHQA 2EFEA 1MUSA 2BXLA 4L8UA 1E7EA 1MIWA 1NT2B 2XVVA 4I9OA 2K0NA 4NAWB 2QMCA 5D7GA 4PO0A 4MBEC 1TF0A 2EFCA 2JUHA 2DBUA 3FWBC 1BM0A 2LOQA 1HK5A 3V09A 3FNMA 2I2ZA 2BXQA 4ZBRA 3SIUB 2BXFA 4OTUA 4FIPB 1GNJA
chains in the Genus database with same CATH topology
1H5WA 3H3AA 1HK4A 4JK4A 5FUOA 2Z8JA 2VUEA 2OZBB 3FWCC 4EMXA 2BXDA 4FJCB 4Z69A 5IFOA 2BXPA 4GG2A 4OT2A 3PLAA 4OR0A 1E7HA 1MIYA 2BXGA 4LUHA 4F5UA 5ID9A 5GIOA 3LU6A 5GINA 2XSIA 2DYOA 2XW1A 1MA9A 3NVIA 4IW2A 1GNIA 4F5VA 3KJLA 4C31B 3SIVB 5GIPA 2AJEA 3NVKA 2BXCA 2Z8IA 4G03A 1HK1A 2QHBA 4ZBQA 3V03A 5IIXA 1J78A 1E7CA 2Z8KA 4GDLB 1BKEA 1HK3A 2NNWA 4LB9A 2BXMA 2DG5A 2E0XA 5DQFA 4ZUXV 5IJEA 3NVMA 4K2CA 1IJGA 3KIKA 1HA2A 2DBWA 2KBZA 2XMOA 3W1SA 4GDKB 4J2VA 1JNBA 3CX9A 2XW0A 4S1YA 3V08A 2E0YA 2BXNA 4TQ0A 5IIUA 3WHRA 4FK5B 3VQIA 2BXAA 5GHKA 2CKXA 4GDXA 2BXBA 4TQ1A 4LB2A 5B5TA 2BXEA 1LNSA 3B9LA 2BXKA 1E7GA 1E7FA 2VUFA 5IJ5A 1UORA 1FOUA 2BXOA 1VZSA 3TDLA 1BJ5A 4E99A 5DBYA 4K71A 3MHSB 1KXPD 4Z9OA 2ROHA 4F5TA 1H9ZA 2V36A 4WA6B 4M70B 5ID7A 4N0UD 2XVWA 4HGMB 3SQJA 1KW2A 3LU7A 2QM6A 2BXIA 5HOZA 2YDFA 4F5SA 2BXHA 1MIVA 2EFDA 3WHSA 1O9XA 4HGKA 3M99C 1N5UA 4G04A 1J7EA 4G01A 1VFIA 1E7AA 2I30A 4DHXB 3H37A 4LUFA 4ZCGA 1E7IA 2OT3A 3A75A 1LOTA 3MHHB 2NQOA 2BX8A 5IIHA 5IJFA 3UIVA 3NMUA 3A73A 3G9KD 2DBXA 4BY9C 4N3ZA 5BPKA 3JQZA 4N0FD 4L9KA 3GA9L 2DYMA 4BKEA 1TXUA 3LU8A 3B9MA 2XVQA 3JRYA 1E78A 4L9QA 4OTTA 1E7BA 4ZBKA 2XVUA 2EFHA 3GQXA 4W4UB 2VDBA 3ICXA 4IW1A 4ZC6A 1AO6A 1HK2A 4LA0A 3GQUA 3WHQA 2EFEA 2BXLA 4L8UA 1E7EA 1MIWA 1NT2B 2XVVA 4NAWB 2QMCA 5D7GA 4PO0A 4MBEC 1TF0A 2EFCA 2JUHA 2DBUA 3FWBC 1BM0A 2LOQA 1HK5A 3V09A 3FNMA 2I2ZA 2BXQA 4ZBRA 3SIUB 2BXFA 4OTUA 4FIPB 1GNJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OTT A;  2DBW A;  4ZBK A;  2Z8J A;  2QM6 A;  4ZC6 A;  2E0Y A;  3WHS A;  3WHQ A;  3WHR A;  4GG2 A;  4GDX A;  4ZCG A;  2QMC A;  3A75 A;  5B5T A;  2NQO A;  2DBX A;  2DBU A;  2Z8I A;  5BPK A;  2Z8K A;  3FNM A;  4Z9O A;  4OTU A;  2DG5 A;  2E0X A;  2V36 A; 
#chains in the Genus database with same CATH topology
 1KDX A;  1H5W A;  3H3A A;  1HK4 A;  4JK4 A;  5FUO A;  2Z8J A;  2VUE A;  2OZB B;  3FWC C;  4EMX A;  2BXD A;  4FJC B;  4Z69 A;  5IFO A;  2BXP A;  1SB0 A;  4GG2 A;  4OT2 A;  4OR0 A;  1E7H A;  1MIY A;  2BXG A;  4LUH A;  4F5U A;  5ID9 A;  5GIO A;  3LU6 A;  5GIN A;  2XSI A;  2DYO A;  2XW1 A;  1MA9 A;  3NVI A;  4IW2 A;  1GNI A;  4F5V A;  3KJL A;  4C31 B;  3SIV B;  5GIP A;  2AJE A;  3NVK A;  2BXC A;  2Z8I A;  4G03 A;  1HK1 A;  2QHB A;  4ZBQ A;  3V03 A;  5IIX A;  1J78 A;  1E7C A;  2Z8K A;  2GUT A;  4GDL B;  1BKE A;  1HK3 A;  2NNW A;  4LB9 A;  4DM0 A;  2BXM A;  2DG5 A;  2E0X A;  1MM8 A;  5DQF A;  4ZUX V;  5IJE A;  3NVM A;  4K2C A;  2LXT A;  1IJG A;  3KIK A;  1HA2 A;  2DBW A;  2KBZ A;  2XMO A;  3W1S A;  4GDK B;  4J2V A;  1JNB A;  3CX9 A;  2XW0 A;  4S1Y A;  3V08 A;  2E0Y A;  2BXN A;  4TQ0 A;  5IIU A;  3WHR A;  4FK5 B;  3VQI A;  2BXA A;  5GHK A;  2KWF A;  2CKX A;  4GDX A;  2BXB A;  4TQ1 A;  4LB2 A;  5B5T A;  2BXE A;  1LNS A;  3B9L A;  2BXK A;  1E7G A;  1E7F A;  2VUF A;  5IJ5 A;  1UOR A;  1FOU A;  2BXO A;  1VZS A;  3TDL A;  1BJ5 A;  4E99 A;  5DBY A;  4K71 A;  3MHS B;  2AGH B;  1KXP D;  4Z9O A;  4D7X A;  2ROH A;  4F5T A;  1H9Z A;  2V36 A;  4WA6 B;  4M70 B;  3BPJ A;  5ID7 A;  4N0U D;  2XVW A;  4HGM B;  3SQJ A;  1KW2 A;  3LU7 A;  2QM6 A;  2BXI A;  5HOZ A;  3PLA A;  2YDF A;  4F5S A;  2BXH A;  1MIV A;  2EFD A;  3WHS A;  1O9X A;  4HGK A;  3M99 C;  1N5U A;  4G04 A;  1J7E A;  4G01 A;  1VFI A;  3ECP A;  2LXS A;  1E7A A;  2I30 A;  4DHX B;  3H37 A;  4LUF A;  4ZCG A;  1E7I A;  2OT3 A;  3A75 A;  1LOT A;  3MHH B;  2NQO A;  2BX8 A;  5IIH A;  5IJF A;  3UIV A;  3NMU A;  1MUH A;  2LQH A;  3A73 A;  3G9K D;  2DBX A;  4BY9 C;  4N3Z A;  5BPK A;  3JQZ A;  4N0F D;  4L9K A;  3GA9 L;  2DYM A;  4BKE A;  1TXU A;  3LU8 A;  3B9M A;  2XVQ A;  3JRY A;  1E78 A;  4L9Q A;  4OTT A;  1E7B A;  2LQI A;  4ZBK A;  2XVU A;  2EFH A;  3GQX A;  4W4U B;  2VDB A;  3ICX A;  4IW1 A;  4ZC6 A;  1AO6 A;  1HK2 A;  4LA0 A;  3GQU A;  3WHQ A;  2EFE A;  1MUS A;  2BXL A;  4L8U A;  1E7E A;  1MIW A;  1NT2 B;  2XVV A;  4I9O A;  2K0N A;  4NAW B;  2QMC A;  5D7G A;  4PO0 A;  4MBE C;  1TF0 A;  2EFC A;  2JUH A;  2DBU A;  3FWB C;  1BM0 A;  2LOQ A;  1HK5 A;  3V09 A;  3FNM A;  2I2Z A;  2BXQ A;  4ZBR A;  3SIU B;  2BXF A;  4OTU A;  4FIP B;  1GNJ A; 
#chains in the Genus database with same CATH homology
 1H5W A;  3H3A A;  1HK4 A;  4JK4 A;  5FUO A;  2Z8J A;  2VUE A;  2OZB B;  3FWC C;  4EMX A;  2BXD A;  4FJC B;  4Z69 A;  5IFO A;  2BXP A;  4GG2 A;  4OT2 A;  3PLA A;  4OR0 A;  1E7H A;  1MIY A;  2BXG A;  4LUH A;  4F5U A;  5ID9 A;  5GIO A;  3LU6 A;  5GIN A;  2XSI A;  2DYO A;  2XW1 A;  1MA9 A;  3NVI A;  4IW2 A;  1GNI A;  4F5V A;  3KJL A;  4C31 B;  3SIV B;  5GIP A;  2AJE A;  3NVK A;  2BXC A;  2Z8I A;  4G03 A;  1HK1 A;  2QHB A;  4ZBQ A;  3V03 A;  5IIX A;  1J78 A;  1E7C A;  2Z8K A;  4GDL B;  1BKE A;  1HK3 A;  2NNW A;  4LB9 A;  2BXM A;  2DG5 A;  2E0X A;  5DQF A;  4ZUX V;  5IJE A;  3NVM A;  4K2C A;  1IJG A;  3KIK A;  1HA2 A;  2DBW A;  2KBZ A;  2XMO A;  3W1S A;  4GDK B;  4J2V A;  1JNB A;  3CX9 A;  2XW0 A;  4S1Y A;  3V08 A;  2E0Y A;  2BXN A;  4TQ0 A;  5IIU A;  3WHR A;  4FK5 B;  3VQI A;  2BXA A;  5GHK A;  2CKX A;  4GDX A;  2BXB A;  4TQ1 A;  4LB2 A;  5B5T A;  2BXE A;  1LNS A;  3B9L A;  2BXK A;  1E7G A;  1E7F A;  2VUF A;  5IJ5 A;  1UOR A;  1FOU A;  2BXO A;  1VZS A;  3TDL A;  1BJ5 A;  4E99 A;  5DBY A;  4K71 A;  3MHS B;  1KXP D;  4Z9O A;  2ROH A;  4F5T A;  1H9Z A;  2V36 A;  4WA6 B;  4M70 B;  5ID7 A;  4N0U D;  2XVW A;  4HGM B;  3SQJ A;  1KW2 A;  3LU7 A;  2QM6 A;  2BXI A;  5HOZ A;  2YDF A;  4F5S A;  2BXH A;  1MIV A;  2EFD A;  3WHS A;  1O9X A;  4HGK A;  3M99 C;  1N5U A;  4G04 A;  1J7E A;  4G01 A;  1VFI A;  1E7A A;  2I30 A;  4DHX B;  3H37 A;  4LUF A;  4ZCG A;  1E7I A;  2OT3 A;  3A75 A;  1LOT A;  3MHH B;  2NQO A;  2BX8 A;  5IIH A;  5IJF A;  3UIV A;  3NMU A;  3A73 A;  3G9K D;  2DBX A;  4BY9 C;  4N3Z A;  5BPK A;  3JQZ A;  4N0F D;  4L9K A;  3GA9 L;  2DYM A;  4BKE A;  1TXU A;  3LU8 A;  3B9M A;  2XVQ A;  3JRY A;  1E78 A;  4L9Q A;  4OTT A;  1E7B A;  4ZBK A;  2XVU A;  2EFH A;  3GQX A;  4W4U B;  2VDB A;  3ICX A;  4IW1 A;  4ZC6 A;  1AO6 A;  1HK2 A;  4LA0 A;  3GQU A;  3WHQ A;  2EFE A;  2BXL A;  4L8U A;  1E7E A;  1MIW A;  1NT2 B;  2XVV A;  4NAW B;  2QMC A;  5D7G A;  4PO0 A;  4MBE C;  1TF0 A;  2EFC A;  2JUH A;  2DBU A;  3FWB C;  1BM0 A;  2LOQ A;  1HK5 A;  3V09 A;  3FNM A;  2I2Z A;  2BXQ A;  4ZBR A;  3SIU B;  2BXF A;  4OTU A;  4FIP B;  1GNJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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