The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
87
|
sequence length |
318
|
structure length |
318
|
Chain Sequence |
TSKINKELITTANDKKYTIATVVKVDGIAWFDRMRDGVDQFKADTGNDVWMVGPSQADAAAQVQIVENLIAQGVDAIAIVPFSVEAVEPVLKKARERGIVVISHEASNIQNVDYDIEAFDNKAYGANLMKELGKSMGGKGKYVTTVGSLTSKSQMEWIDGAVEYQKANFPEMSEATGRLETYDDANTDYNKLKEAMTAYPDITGILGAPMPTSAGAGRLIAEGGLKGKVFFAGTGLVSVAGEYIKNDDVQYIQFWDPAVAGYAMNMLAVAALEKKNDQIKAGLNLGLPGYESLLAPDAAKPNLLYGAGWVGVTKENMD
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal Structure of a putative Periplasmic Solute binding protein (IPR025997) from Ochrobactrum Anthropi ATCC49188(Oant_2843, TARGET EFI-511085)
rcsb |
| molecule keywords |
Putative periplasmic binding protein with substrate ribose
|
| source organism |
Ochrobactrum anthropi (strain atcc 49188 / dsm 6882 / nctc 12168)
|
| molecule tags |
Solute-binding protein
|
| total genus |
87
|
| structure length |
318
|
| sequence length |
318
|
| ec nomenclature | |
| pdb deposition date | 2015-05-30 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF13407 | Peripla_BP_4 | Periplasmic binding protein domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Rossmann fold | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Rossmann fold |
